Wall clock time and date at job start Tue Mar 31 2020 23:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 O 1.21281 * 119.99736 * 119.99813 * 4 2 1 6 6 N 1.34770 * 120.00019 * 300.00531 * 4 2 1 7 7 C 1.46512 * 119.99646 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46797 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47069 * 304.99678 * 8 7 6 10 10 O 1.42899 * 109.47405 * 64.99873 * 8 7 6 11 11 C 1.53006 * 109.46846 * 185.00244 * 8 7 6 12 12 N 1.46902 * 109.46859 * 180.02562 * 11 8 7 13 13 C 1.46894 * 110.99540 * 179.97438 * 12 11 8 14 14 C 1.50703 * 109.46833 * 179.97438 * 13 12 11 15 15 O 1.21294 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00149 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00078 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00312 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99971 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47234 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46469 * 120.00586 * 21 19 17 24 24 H 1.48493 * 109.47499 * 240.00287 * 21 19 17 25 25 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 26 26 C 1.34949 * 126.03339 * 324.99340 * 25 2 1 27 27 C 1.35319 * 107.74151 * 179.97438 * 26 25 2 28 28 C 1.39863 * 107.92335 * 0.02562 * 27 26 25 29 29 N 1.30842 * 108.20032 * 359.73867 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.96992 * 120.00518 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47027 * 299.99897 * 7 6 4 35 35 H 1.08992 * 109.46968 * 60.00347 * 7 6 4 36 36 H 0.96701 * 113.99546 * 59.99741 * 10 8 7 37 37 H 1.08993 * 109.46769 * 299.99438 * 11 8 7 38 38 H 1.08991 * 109.46966 * 59.99992 * 11 8 7 39 39 H 1.00908 * 110.99706 * 303.95177 * 12 11 8 40 40 H 1.08995 * 109.47265 * 299.99571 * 13 12 11 41 41 H 1.08996 * 109.47273 * 59.99964 * 13 12 11 42 42 H 0.96999 * 120.00067 * 0.02562 * 16 14 13 43 43 H 0.96996 * 119.99691 * 179.97438 * 20 19 17 44 44 H 1.07996 * 126.13035 * 0.02562 * 26 25 2 45 45 H 1.08008 * 126.03344 * 180.02562 * 27 26 25 46 46 H 1.07998 * 125.89851 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6842 -0.2202 4.9000 9 1 1.9726 0.8301 4.8567 10 8 0.2600 -0.3210 4.9596 11 6 2.2939 -0.8656 6.1461 12 7 1.8033 -0.1738 7.3456 13 6 2.3686 -0.7682 8.5642 14 6 1.8442 -0.0337 9.7711 15 8 1.0748 0.8933 9.6300 16 7 2.2293 -0.4076 11.0074 17 6 1.7526 0.2608 12.1053 18 1 1.0682 1.0868 11.9797 19 6 2.1492 -0.1250 13.3800 20 7 2.9816 -1.1304 13.5330 21 14 1.5004 0.7863 14.8760 22 1 0.5857 1.8706 14.4368 23 1 0.7618 -0.1601 15.7501 24 1 2.6373 1.3724 15.6303 25 7 2.0184 -0.6905 -1.1962 26 6 1.4403 -1.7558 -1.7895 27 6 2.1963 -2.0920 -2.8603 28 6 3.2735 -1.2021 -2.9232 29 7 3.1650 -0.3582 -1.9292 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1494 0.5388 2.5436 34 1 1.8310 -1.9686 3.6505 35 1 3.2846 -0.9413 3.6509 36 1 -0.0685 -1.2296 5.0001 37 1 2.0055 -1.9157 6.1893 38 1 3.3801 -0.7885 6.1005 39 1 2.0013 0.8146 7.2994 40 1 2.0807 -1.8178 8.6237 41 1 3.4554 -0.6905 8.5359 42 1 2.8442 -1.1492 11.1203 43 1 3.2587 -1.3994 14.4227 44 1 0.5359 -2.2507 -1.4680 45 1 2.0021 -2.9041 -3.5454 46 1 4.0571 -1.2079 -3.6663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320199061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:14 Heat of formation + Delta-G solvation = -35.346325 kcal Electronic energy + Delta-G solvation = -27981.117368 eV Core-core repulsion = 23714.967602 eV Total energy + Delta-G solvation = -4266.149766 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66661 -40.11472 -38.56915 -37.90583 -35.15267 -35.02265 -34.56880 -33.81374 -31.27109 -30.74265 -30.33098 -29.68694 -27.37439 -25.58036 -24.67155 -23.30037 -22.07910 -21.77040 -21.37894 -20.23605 -19.28751 -18.32640 -17.92884 -17.56736 -17.06891 -16.63344 -15.86317 -15.76724 -15.64121 -15.09994 -15.06466 -14.69362 -14.55345 -14.42294 -14.06325 -13.93692 -13.79516 -13.44418 -13.40866 -13.20647 -13.06605 -12.89114 -12.61889 -12.54613 -12.19201 -11.92578 -11.59548 -11.52992 -11.23132 -11.07407 -11.01139 -10.60078 -10.35918 -10.28199 -10.22153 -9.70299 -9.59290 -9.54132 -8.90953 -8.49793 -8.11616 -7.98377 -6.43955 -3.84817 1.48865 1.93775 2.06201 2.58486 2.70067 3.14884 3.25659 3.32924 3.82821 3.87933 3.92348 4.07537 4.17934 4.22867 4.25213 4.45265 4.59864 4.62146 4.70570 4.82745 4.85329 4.95094 5.05238 5.20014 5.20296 5.26040 5.28093 5.32144 5.45861 5.47516 5.70899 5.72085 5.75675 5.87710 5.91404 6.21966 6.32062 6.58520 6.94890 7.08314 7.38358 7.42882 7.53467 7.59255 7.66142 8.04143 8.58776 9.15811 9.51787 10.03093 10.73833 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.044179 B = 0.001421 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.635413 B =19700.975302 C =20024.478910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.129 0.871 4 C 0.500 3.500 5 O -0.521 6.521 6 N -0.717 5.717 7 C 0.088 3.912 8 C 0.101 3.899 9 H 0.105 0.895 10 O -0.542 6.542 11 C 0.029 3.971 12 N -0.658 5.658 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.356 5.356 26 C 0.068 3.932 27 C -0.274 4.274 28 C 0.048 3.952 29 N -0.293 5.293 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.407 0.593 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.376 0.624 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.350 0.650 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.170 0.830 45 H 0.148 0.852 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 -1.939 -30.153 30.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.147 0.853 4 C 0.283 3.717 5 O -0.396 6.396 6 N -0.370 5.370 7 C -0.036 4.036 8 C 0.041 3.959 9 H 0.123 0.877 10 O -0.347 6.347 11 C -0.102 4.102 12 N -0.290 5.290 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.466 6.466 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.122 0.878 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.139 5.139 26 C -0.078 4.078 27 C -0.303 4.303 28 C -0.139 4.139 29 N -0.113 5.113 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.223 0.777 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.170 0.830 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.187 0.813 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.412 -0.750 -29.410 29.518 hybrid contribution 0.594 -0.902 0.613 1.242 sum -1.818 -1.652 -28.797 28.902 Atomic orbital electron populations 1.22180 0.90255 1.04497 1.05053 1.21072 0.96281 0.97733 0.81184 0.85337 1.20745 0.80969 0.85226 0.84737 1.90787 1.36684 1.25715 1.86426 1.45803 1.53798 1.32480 1.04920 1.22132 1.00346 0.96966 0.84165 1.22093 0.82218 1.00553 0.91033 0.87745 1.86625 1.18880 1.32697 1.96463 1.22562 0.97347 0.99509 0.90750 1.59954 1.61925 1.07864 0.99276 1.21691 0.96702 0.99635 0.90209 1.19778 0.86221 0.87366 0.84078 1.90534 1.38477 1.31784 1.85758 1.41869 1.42185 1.31555 1.04443 1.19765 1.25522 1.14068 0.83550 0.87835 1.25270 0.96745 0.96784 0.99145 1.69622 1.33422 1.27148 1.24116 0.85794 0.78585 0.79264 0.80670 1.19191 1.20730 1.20771 1.48171 1.19940 1.24508 1.21256 1.22421 0.99835 0.90725 0.94795 1.21483 0.99185 1.06333 1.03339 1.23888 0.99077 0.93846 0.97060 1.77364 1.02156 1.24361 1.07399 0.90795 0.88926 0.89962 0.75746 0.90703 0.90355 0.77664 0.90418 0.94374 0.82999 0.89609 0.93906 0.77478 0.91913 0.81293 0.83468 0.79978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.57 8.73 37.16 0.32 -0.25 16 2 C 0.14 0.98 3.73 -69.08 -0.26 0.73 16 3 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.50 4.57 7.22 -10.99 -0.08 4.49 16 5 O -0.52 -7.22 16.42 5.56 0.09 -7.13 16 6 N -0.72 -4.91 5.40 -60.29 -0.33 -5.24 16 7 C 0.09 0.68 5.31 -4.04 -0.02 0.66 16 8 C 0.10 0.85 3.21 -26.73 -0.09 0.76 16 9 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 10 O -0.54 -5.19 13.15 -35.23 -0.46 -5.66 16 11 C 0.03 0.30 5.35 -3.82 -0.02 0.28 16 12 N -0.66 -9.89 5.99 -115.06 -0.69 -10.58 16 13 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 14 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16 15 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 16 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 17 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 18 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 20 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 21 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 N -0.36 -3.39 3.02 -55.99 -0.17 -3.56 16 26 C 0.07 0.56 10.58 -17.22 -0.18 0.38 16 27 C -0.27 -2.23 10.80 -40.01 -0.43 -2.67 16 28 C 0.05 0.44 12.03 -17.37 -0.21 0.23 16 29 N -0.29 -3.33 12.58 30.62 0.39 -2.95 16 30 H 0.07 0.26 7.16 -51.93 -0.37 -0.11 16 31 H 0.09 0.18 7.56 -51.93 -0.39 -0.21 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.41 1.94 7.89 -40.82 -0.32 1.62 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.38 2.70 9.05 45.56 0.41 3.11 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.17 0.90 7.26 -52.49 -0.38 0.52 16 45 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 46 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -37.86 397.76 -6.64 -44.50 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -5.87 Total: 14.63 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.32 Total: 7.63 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.13 Total: -60.26 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.28 Total: -28.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.86 -6.64 -44.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320199061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.152 kcal (2) G-P(sol) polarization free energy of solvation -37.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds