Wall clock time and date at job start Tue Mar 31 2020 23:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 O 1.21281 * 119.99736 * 119.99813 * 4 2 1 6 6 N 1.34770 * 120.00019 * 300.00531 * 4 2 1 7 7 C 1.46512 * 119.99646 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46797 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.47069 * 304.99678 * 8 7 6 10 10 O 1.42899 * 109.47405 * 64.99873 * 8 7 6 11 11 C 1.53006 * 109.46846 * 185.00244 * 8 7 6 12 12 N 1.46902 * 109.46859 * 180.02562 * 11 8 7 13 13 C 1.46894 * 110.99540 * 179.97438 * 12 11 8 14 14 C 1.50703 * 109.46833 * 179.97438 * 13 12 11 15 15 O 1.21294 * 120.00185 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00149 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00078 * 179.97438 * 16 14 13 18 18 H 1.08002 * 120.00312 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99971 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47234 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46469 * 120.00586 * 21 19 17 24 24 H 1.48493 * 109.47499 * 240.00287 * 21 19 17 25 25 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 26 26 C 1.34949 * 126.03339 * 324.99340 * 25 2 1 27 27 C 1.35319 * 107.74151 * 179.97438 * 26 25 2 28 28 C 1.39863 * 107.92335 * 0.02562 * 27 26 25 29 29 N 1.30842 * 108.20032 * 359.73867 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.96992 * 120.00518 * 359.97438 * 6 4 2 34 34 H 1.09001 * 109.47027 * 299.99897 * 7 6 4 35 35 H 1.08992 * 109.46968 * 60.00347 * 7 6 4 36 36 H 0.96701 * 113.99546 * 59.99741 * 10 8 7 37 37 H 1.08993 * 109.46769 * 299.99438 * 11 8 7 38 38 H 1.08991 * 109.46966 * 59.99992 * 11 8 7 39 39 H 1.00908 * 110.99706 * 303.95177 * 12 11 8 40 40 H 1.08995 * 109.47265 * 299.99571 * 13 12 11 41 41 H 1.08996 * 109.47273 * 59.99964 * 13 12 11 42 42 H 0.96999 * 120.00067 * 0.02562 * 16 14 13 43 43 H 0.96996 * 119.99691 * 179.97438 * 20 19 17 44 44 H 1.07996 * 126.13035 * 0.02562 * 26 25 2 45 45 H 1.08008 * 126.03344 * 180.02562 * 27 26 25 46 46 H 1.07998 * 125.89851 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.6842 -0.2202 4.9000 9 1 1.9726 0.8301 4.8567 10 8 0.2600 -0.3210 4.9596 11 6 2.2939 -0.8656 6.1461 12 7 1.8033 -0.1738 7.3456 13 6 2.3686 -0.7682 8.5642 14 6 1.8442 -0.0337 9.7711 15 8 1.0748 0.8933 9.6300 16 7 2.2293 -0.4076 11.0074 17 6 1.7526 0.2608 12.1053 18 1 1.0682 1.0868 11.9797 19 6 2.1492 -0.1250 13.3800 20 7 2.9816 -1.1304 13.5330 21 14 1.5004 0.7863 14.8760 22 1 0.5857 1.8706 14.4368 23 1 0.7618 -0.1601 15.7501 24 1 2.6373 1.3724 15.6303 25 7 2.0184 -0.6905 -1.1962 26 6 1.4403 -1.7558 -1.7895 27 6 2.1963 -2.0920 -2.8603 28 6 3.2735 -1.2021 -2.9232 29 7 3.1650 -0.3582 -1.9292 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.1494 0.5388 2.5436 34 1 1.8310 -1.9686 3.6505 35 1 3.2846 -0.9413 3.6509 36 1 -0.0685 -1.2296 5.0001 37 1 2.0055 -1.9157 6.1893 38 1 3.3801 -0.7885 6.1005 39 1 2.0013 0.8146 7.2994 40 1 2.0807 -1.8178 8.6237 41 1 3.4554 -0.6905 8.5359 42 1 2.8442 -1.1492 11.1203 43 1 3.2587 -1.3994 14.4227 44 1 0.5359 -2.2507 -1.4680 45 1 2.0021 -2.9041 -3.5454 46 1 4.0571 -1.2079 -3.6663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320199061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:13 Heat of formation + Delta-G solvation = -69.287017 kcal Electronic energy + Delta-G solvation = -27982.589147 eV Core-core repulsion = 23714.967602 eV Total energy + Delta-G solvation = -4267.621545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28100 -40.82372 -40.17464 -38.93675 -36.34586 -35.78018 -35.62149 -35.24289 -33.27093 -31.53994 -30.99401 -30.31634 -28.58595 -26.75424 -25.72114 -24.44733 -22.82976 -22.45519 -21.98974 -21.11928 -20.82502 -19.91640 -18.94945 -18.26485 -18.06157 -17.48625 -17.19335 -16.70804 -16.51847 -16.33299 -16.08166 -16.03045 -15.55651 -15.33912 -15.14548 -15.03549 -14.60628 -14.46479 -14.44731 -13.98940 -13.82880 -13.57043 -13.47092 -13.39339 -13.24697 -13.20406 -12.96642 -12.71044 -12.63113 -12.40936 -12.11519 -11.95955 -11.66281 -11.51759 -11.34640 -11.01858 -10.38889 -10.32209 -10.26960 -10.01880 -9.52860 -9.30584 -8.47407 -5.96126 0.86551 1.35476 1.36536 1.42021 1.42537 1.56223 1.96752 2.04875 2.07585 2.29354 2.87245 3.20066 3.36442 3.44842 3.55242 3.61107 3.78729 3.81235 3.96637 4.01302 4.10779 4.13592 4.31114 4.43009 4.49990 4.54633 4.56585 4.61412 4.66583 4.71226 4.72456 4.87573 5.03219 5.07784 5.15145 5.23104 5.40784 5.72916 5.85532 6.03657 6.07891 6.35221 6.37619 6.59562 6.74898 6.87229 7.03062 7.12361 7.55879 8.11239 8.70165 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.044179 B = 0.001421 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.635413 B =19700.975302 C =20024.478910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.139 0.861 4 C 0.501 3.499 5 O -0.574 6.574 6 N -0.702 5.702 7 C 0.096 3.904 8 C 0.116 3.884 9 H 0.107 0.893 10 O -0.556 6.556 11 C 0.029 3.971 12 N -0.672 5.672 13 C 0.065 3.935 14 C 0.437 3.563 15 O -0.623 6.623 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.271 1.271 25 N -0.365 5.365 26 C 0.060 3.940 27 C -0.285 4.285 28 C 0.038 3.962 29 N -0.339 5.339 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.419 0.581 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.386 0.614 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.344 0.656 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.195 0.805 45 H 0.168 0.832 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 -2.284 -30.668 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.156 0.844 4 C 0.286 3.714 5 O -0.452 6.452 6 N -0.355 5.355 7 C -0.028 4.028 8 C 0.055 3.945 9 H 0.124 0.876 10 O -0.363 6.363 11 C -0.101 4.101 12 N -0.305 5.305 13 C -0.067 4.067 14 C 0.224 3.776 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.196 1.196 25 N -0.148 5.148 26 C -0.085 4.085 27 C -0.314 4.314 28 C -0.147 4.147 29 N -0.160 5.160 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.109 0.891 33 H 0.257 0.743 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.162 0.838 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.212 0.788 45 H 0.186 0.814 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.969 -1.098 -29.929 30.096 hybrid contribution 0.755 -0.810 0.724 1.323 sum -2.213 -1.908 -29.205 29.351 Atomic orbital electron populations 1.22207 0.87511 1.05041 1.06425 1.21326 0.98241 0.97481 0.79413 0.84367 1.21162 0.80031 0.84528 0.85708 1.90761 1.39164 1.28137 1.87164 1.45697 1.53151 1.32445 1.04214 1.21985 0.99898 0.96943 0.84012 1.21930 0.81681 1.00518 0.90348 0.87560 1.86605 1.19364 1.33857 1.96441 1.22670 0.98260 0.99717 0.89411 1.59949 1.62708 1.07758 1.00057 1.21541 0.97697 0.99418 0.88087 1.20916 0.84831 0.86683 0.85153 1.90500 1.40147 1.33678 1.86574 1.41944 1.42635 1.31774 1.04767 1.19714 1.26677 1.14706 0.85296 0.90324 1.26035 0.96587 0.97363 1.01229 1.69677 1.33656 1.27695 1.25122 0.84870 0.78179 0.78051 0.77236 1.19766 1.19635 1.19613 1.48408 1.19615 1.25045 1.21708 1.22961 1.00555 0.90350 0.94636 1.21857 0.98902 1.06785 1.03878 1.24394 0.99847 0.93529 0.96968 1.77278 1.03787 1.26093 1.08796 0.90637 0.87008 0.89080 0.74284 0.90666 0.90994 0.76476 0.89317 0.93015 0.83765 0.87746 0.91640 0.76982 0.91314 0.78790 0.81411 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 8.73 71.98 0.63 -0.12 16 2 C 0.14 1.78 3.73 44.25 0.17 1.94 16 3 H 0.14 1.40 8.14 -2.39 -0.02 1.39 16 4 C 0.50 8.72 7.22 87.66 0.63 9.35 16 5 O -0.57 -15.85 16.42 -3.03 -0.05 -15.90 16 6 N -0.70 -8.52 5.40 -463.05 -2.50 -11.02 16 7 C 0.10 1.32 5.31 86.38 0.46 1.78 16 8 C 0.12 1.71 3.21 30.60 0.10 1.81 16 9 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 10 O -0.56 -9.57 13.15 -148.98 -1.96 -11.53 16 11 C 0.03 0.54 5.35 86.30 0.46 1.00 16 12 N -0.67 -19.23 5.99 -517.95 -3.10 -22.33 16 13 C 0.06 2.10 6.17 85.56 0.53 2.63 16 14 C 0.44 20.43 7.82 87.66 0.69 21.11 16 15 O -0.62 -34.23 15.78 -3.07 -0.05 -34.28 16 16 N -0.57 -29.17 5.29 -306.97 -1.62 -30.79 16 17 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -49.38 13.05 21.67 0.28 -49.09 16 21 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 N -0.37 -6.75 3.02 -331.05 -1.00 -7.75 16 26 C 0.06 0.94 10.58 83.54 0.88 1.82 16 27 C -0.29 -4.40 10.80 21.99 0.24 -4.16 16 28 C 0.04 0.69 12.03 85.23 1.02 1.72 16 29 N -0.34 -7.75 12.58 -57.03 -0.72 -8.46 16 30 H 0.07 0.37 7.16 -2.39 -0.02 0.36 16 31 H 0.11 0.12 7.56 -2.39 -0.02 0.10 16 32 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.42 3.10 7.89 -92.71 -0.73 2.37 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.39 4.76 9.05 -74.06 -0.67 4.09 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.34 10.58 8.43 -89.69 -0.76 9.82 16 40 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 43 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.20 1.73 7.26 -2.91 -0.02 1.71 16 45 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -83.37 397.76 -3.44 -86.81 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -1.84 Total: 39.07 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.09 Total: 20.56 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -8.66 Total: -129.45 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -2.06 Total: -61.71 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -83.37 -3.44 -86.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320199061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.524 kcal (2) G-P(sol) polarization free energy of solvation -83.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds