Wall clock time and date at job start Tue Mar 31 2020 23:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47567 * 2 1 4 4 N 1.46500 * 109.46812 * 120.00508 * 2 1 3 5 5 C 1.36935 * 120.00157 * 275.26906 * 4 2 1 6 6 H 1.08001 * 119.99460 * 359.72950 * 5 4 2 7 7 C 1.38812 * 120.00489 * 179.72406 * 5 4 2 8 8 N 1.31620 * 119.99453 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00356 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46843 * 60.00184 * 9 7 5 11 11 H 1.48499 * 109.47132 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46873 * 300.00447 * 9 7 5 13 13 C 1.53002 * 109.46888 * 240.00305 * 2 1 3 14 14 H 1.09002 * 110.88877 * 300.37005 * 13 2 1 15 15 C 1.55160 * 111.00437 * 176.45510 * 13 2 1 16 16 C 1.54322 * 102.94269 * 206.42390 * 15 13 2 17 17 N 1.47022 * 107.27074 * 22.18908 * 16 15 13 18 18 C 1.34779 * 125.64803 * 181.02408 * 17 16 15 19 19 O 1.21558 * 120.00069 * 185.27610 * 18 17 16 20 20 C 1.47766 * 119.99873 * 5.27222 * 18 17 16 21 21 C 1.40628 * 119.80257 * 171.50848 * 20 18 17 22 22 C 1.35707 * 120.91973 * 179.68920 * 21 20 18 23 23 C 1.40762 * 120.10723 * 0.60284 * 22 21 20 24 24 N 1.33650 * 120.82375 * 179.65590 * 23 22 21 25 25 C 1.31123 * 121.39348 * 180.02562 * 24 23 22 26 26 C 1.39318 * 121.76808 * 359.97438 * 25 24 23 27 27 C 1.36587 * 119.90393 * 0.02562 * 26 25 24 28 28 C 1.40894 * 118.15762 * 359.97438 * 27 26 25 29 29 C 1.38555 * 119.80462 * 351.77312 * 20 18 17 30 30 C 1.47427 * 108.70233 * 1.06070 * 17 16 15 31 31 H 1.09001 * 109.46733 * 62.44893 * 1 2 3 32 32 H 1.08995 * 109.47429 * 182.44427 * 1 2 3 33 33 H 1.08994 * 109.47068 * 302.44929 * 1 2 3 34 34 H 0.97003 * 120.00299 * 94.99894 * 4 2 1 35 35 H 0.97003 * 119.99970 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.71882 * 324.78600 * 15 13 2 37 37 H 1.08996 * 110.72301 * 88.05160 * 15 13 2 38 38 H 1.09001 * 109.88158 * 262.76991 * 16 15 13 39 39 H 1.09005 * 109.88076 * 141.61025 * 16 15 13 40 40 H 1.08002 * 119.54120 * 359.97438 * 21 20 18 41 41 H 1.07997 * 119.94743 * 180.27714 * 22 21 20 42 42 H 1.08001 * 119.11666 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.04728 * 180.02562 * 26 25 24 44 44 H 1.07995 * 120.91772 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.29491 * 0.02794 * 29 20 18 46 46 H 1.09004 * 110.36355 * 217.03002 * 30 17 16 47 47 H 1.09006 * 110.45586 * 94.75677 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1438 -0.0091 2.3771 6 1 1.8870 1.0388 2.4256 7 6 2.6010 -0.6649 3.5119 8 7 2.9143 -1.9419 3.4526 9 14 2.7715 0.2648 5.1231 10 1 1.4471 0.8009 5.5277 11 1 3.2760 -0.6549 6.1742 12 1 3.7276 1.3875 4.9479 13 6 2.0400 -0.7212 -1.2493 14 1 1.6841 -1.7511 -1.2760 15 6 3.5884 -0.6649 -1.3309 16 6 3.8591 -0.7795 -2.8459 17 7 2.6354 -0.3546 -3.5413 18 6 2.4596 -0.3296 -4.8773 19 8 1.4379 0.1315 -5.3474 20 6 3.5091 -0.8627 -5.7707 21 6 3.2521 -1.0005 -7.1464 22 6 4.2015 -1.4816 -7.9883 23 6 5.4607 -1.8633 -7.4884 24 7 6.4038 -2.3453 -8.3035 25 6 7.5804 -2.7047 -7.8498 26 6 7.9081 -2.6029 -6.4995 27 6 6.9911 -2.1184 -5.6108 28 6 5.7280 -1.7333 -6.1023 29 6 4.7385 -1.2289 -5.2471 30 6 1.6329 0.0405 -2.5352 31 1 -0.3633 0.4753 -0.9112 32 1 -0.3634 -1.0267 0.0438 33 1 -0.3633 0.5514 0.8672 34 1 2.2489 -1.6319 1.1526 35 1 3.2342 -2.4002 4.2454 36 1 3.9608 0.2834 -0.9433 37 1 4.0336 -1.5031 -0.7950 38 1 4.0923 -1.8126 -3.1036 39 1 4.6886 -0.1295 -3.1244 40 1 2.2873 -0.7152 -7.5391 41 1 3.9887 -1.5768 -9.0429 42 1 8.3154 -3.0891 -8.5414 43 1 8.8859 -2.9066 -6.1561 44 1 7.2279 -2.0321 -4.5607 45 1 4.9325 -1.1268 -4.1896 46 1 0.6354 -0.2610 -2.8550 47 1 1.6670 1.1167 -2.3655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325435702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:20 Heat of formation + Delta-G solvation = 55.730539 kcal Electronic energy + Delta-G solvation = -28489.170389 eV Core-core repulsion = 24637.819275 eV Total energy + Delta-G solvation = -3851.351114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.33425 -40.15878 -38.05317 -36.88578 -35.41096 -33.91081 -32.58694 -31.18478 -30.75677 -30.37824 -29.16937 -27.50708 -25.63799 -24.48136 -23.94132 -23.22110 -22.46774 -21.40825 -20.24679 -19.71215 -18.66479 -17.61288 -17.21503 -17.07113 -16.38201 -16.21104 -15.51803 -14.98357 -14.75268 -14.61663 -14.36959 -14.22050 -13.92553 -13.63931 -13.52493 -13.48964 -13.21683 -13.04985 -12.71252 -12.52982 -12.28484 -12.08670 -11.90209 -11.84713 -11.49481 -11.19907 -10.96024 -10.91087 -10.77363 -10.64799 -10.41483 -10.28040 -10.12235 -9.90230 -9.76498 -9.67784 -9.16675 -8.95673 -8.72640 -8.63228 -7.01616 -5.81553 -3.10093 -0.12132 0.35702 1.56152 2.16289 2.81953 3.09409 3.40267 3.45595 3.45799 3.78447 3.89215 4.14590 4.24024 4.34404 4.48213 4.52069 4.60409 4.67656 4.76134 4.85672 4.94616 4.98085 5.09349 5.18056 5.28675 5.39017 5.48431 5.50839 5.54613 5.61128 5.69384 5.80667 5.82056 5.89007 5.91372 5.95851 5.98339 6.12917 6.14810 6.17740 6.29629 6.38510 6.44129 6.52058 6.58894 6.82442 7.05303 7.38386 7.52155 7.65558 8.01179 8.37003 9.48533 10.05037 10.40072 11.40952 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.002395 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.558282 B =11689.201402 C =13169.558679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.118 4.118 16 C 0.084 3.916 17 N -0.608 5.608 18 C 0.570 3.430 19 O -0.538 6.538 20 C -0.123 4.123 21 C -0.052 4.052 22 C -0.103 4.103 23 C 0.141 3.859 24 N -0.480 5.480 25 C 0.139 3.861 26 C -0.182 4.182 27 C -0.046 4.046 28 C -0.113 4.113 29 C -0.091 4.091 30 C 0.114 3.886 31 H 0.038 0.962 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.173 0.827 46 H 0.079 0.921 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.866 -1.084 -21.397 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.156 4.156 16 C -0.038 4.038 17 N -0.341 5.341 18 C 0.359 3.641 19 O -0.416 6.416 20 C -0.126 4.126 21 C -0.072 4.072 22 C -0.122 4.122 23 C 0.020 3.980 24 N -0.188 5.188 25 C -0.034 4.034 26 C -0.201 4.201 27 C -0.072 4.072 28 C -0.115 4.115 29 C -0.110 4.110 30 C -0.008 4.008 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.160 0.840 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.158 0.842 44 H 0.161 0.839 45 H 0.189 0.811 46 H 0.097 0.903 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.016 -0.747 -22.459 23.859 hybrid contribution 0.480 0.116 1.853 1.918 sum 8.497 -0.631 -20.606 22.298 Atomic orbital electron populations 1.22499 0.99198 1.01166 0.99980 1.20127 0.91832 0.95153 0.85372 0.93225 1.42356 1.78201 1.10703 1.05028 1.19166 1.36646 0.93826 0.87172 0.91287 1.24711 1.02241 0.95942 0.97958 1.69642 1.51010 1.08598 1.28929 0.86300 0.77786 0.78593 0.83695 1.21316 1.21749 1.21312 1.22677 0.95084 1.00351 0.94116 0.89953 1.22662 0.96609 1.04483 0.91851 1.22682 0.87283 0.99528 0.94353 1.48429 1.16252 1.64682 1.04747 1.17861 0.86541 0.79030 0.80630 1.90779 1.29370 1.46633 1.74835 1.19938 0.94578 1.03504 0.94534 1.20911 0.99895 0.95050 0.91341 1.20700 0.90949 0.99790 1.00721 1.19063 0.94016 0.95786 0.89132 1.68079 1.01574 1.11038 1.38094 1.23052 0.93220 0.93057 0.94059 1.21922 1.01285 1.02222 0.94712 1.21605 0.91504 0.93399 1.00717 1.18836 0.95616 1.02616 0.94449 1.23120 0.91674 0.93869 1.02306 1.22371 0.92103 0.99569 0.86732 0.94333 0.93363 0.92766 0.78292 0.93492 0.89916 0.89156 0.90505 0.90597 0.83966 0.84146 0.82259 0.84204 0.83876 0.81070 0.90271 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.35 37.16 0.35 -2.53 16 2 C 0.19 3.32 2.40 -67.93 -0.16 3.16 16 3 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 4 N -0.72 -16.53 4.87 -53.43 -0.26 -16.79 16 5 C -0.24 -6.19 9.93 -15.06 -0.15 -6.34 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 9 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.10 -1.49 2.63 -88.47 -0.23 -1.72 16 14 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.53 6.18 -24.90 -0.15 -1.69 16 16 C 0.08 0.88 4.87 -3.07 -0.01 0.87 16 17 N -0.61 -7.88 3.33 -177.04 -0.59 -8.47 16 18 C 0.57 8.07 7.80 -12.36 -0.10 7.97 16 19 O -0.54 -9.24 16.64 5.31 0.09 -9.15 16 20 C -0.12 -1.46 5.87 -104.98 -0.62 -2.08 16 21 C -0.05 -0.57 9.48 -39.59 -0.38 -0.95 16 22 C -0.10 -1.07 9.95 -39.53 -0.39 -1.47 16 23 C 0.14 1.57 6.61 -84.78 -0.56 1.01 16 24 N -0.48 -5.09 10.33 -10.92 -0.11 -5.21 16 25 C 0.14 1.06 11.15 -17.45 -0.19 0.86 16 26 C -0.18 -1.18 10.03 -39.78 -0.40 -1.58 16 27 C -0.05 -0.35 9.89 -39.17 -0.39 -0.74 16 28 C -0.11 -1.13 5.74 -106.82 -0.61 -1.75 16 29 C -0.09 -0.92 8.35 -38.74 -0.32 -1.24 16 30 C 0.11 1.56 5.43 -2.53 -0.01 1.55 16 31 H 0.04 0.56 7.25 -51.93 -0.38 0.18 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.38 9.37 7.80 -40.82 -0.32 9.05 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.08 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.71 6.68 -51.93 -0.35 0.36 16 39 H 0.08 0.66 6.78 -51.93 -0.35 0.31 16 40 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 41 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 45 H 0.17 1.43 2.72 -59.44 -0.16 1.27 16 46 H 0.08 1.12 7.95 -51.93 -0.41 0.71 16 47 H 0.07 0.98 8.03 -51.93 -0.42 0.57 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -32.46 382.16 -10.40 -42.86 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.55 Total: 7.67 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -4.43 Total: -7.10 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.24 Total: -56.66 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.46 -10.40 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325435702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.590 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds