Wall clock time and date at job start Tue Mar 31 2020 23:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47567 * 2 1 4 4 N 1.46500 * 109.46812 * 120.00508 * 2 1 3 5 5 C 1.36935 * 120.00157 * 275.26906 * 4 2 1 6 6 H 1.08001 * 119.99460 * 359.72950 * 5 4 2 7 7 C 1.38812 * 120.00489 * 179.72406 * 5 4 2 8 8 N 1.31620 * 119.99453 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00356 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46843 * 60.00184 * 9 7 5 11 11 H 1.48499 * 109.47132 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46873 * 300.00447 * 9 7 5 13 13 C 1.53002 * 109.46888 * 240.00305 * 2 1 3 14 14 H 1.09002 * 110.88877 * 300.37005 * 13 2 1 15 15 C 1.55160 * 111.00437 * 176.45510 * 13 2 1 16 16 C 1.54322 * 102.94269 * 206.42390 * 15 13 2 17 17 N 1.47022 * 107.27074 * 22.18908 * 16 15 13 18 18 C 1.34779 * 125.64803 * 181.02408 * 17 16 15 19 19 O 1.21558 * 120.00069 * 185.27610 * 18 17 16 20 20 C 1.47766 * 119.99873 * 5.27222 * 18 17 16 21 21 C 1.40628 * 119.80257 * 171.50848 * 20 18 17 22 22 C 1.35707 * 120.91973 * 179.68920 * 21 20 18 23 23 C 1.40762 * 120.10723 * 0.60284 * 22 21 20 24 24 N 1.33650 * 120.82375 * 179.65590 * 23 22 21 25 25 C 1.31123 * 121.39348 * 180.02562 * 24 23 22 26 26 C 1.39318 * 121.76808 * 359.97438 * 25 24 23 27 27 C 1.36587 * 119.90393 * 0.02562 * 26 25 24 28 28 C 1.40894 * 118.15762 * 359.97438 * 27 26 25 29 29 C 1.38555 * 119.80462 * 351.77312 * 20 18 17 30 30 C 1.47427 * 108.70233 * 1.06070 * 17 16 15 31 31 H 1.09001 * 109.46733 * 62.44893 * 1 2 3 32 32 H 1.08995 * 109.47429 * 182.44427 * 1 2 3 33 33 H 1.08994 * 109.47068 * 302.44929 * 1 2 3 34 34 H 0.97003 * 120.00299 * 94.99894 * 4 2 1 35 35 H 0.97003 * 119.99970 * 179.97438 * 8 7 5 36 36 H 1.09006 * 110.71882 * 324.78600 * 15 13 2 37 37 H 1.08996 * 110.72301 * 88.05160 * 15 13 2 38 38 H 1.09001 * 109.88158 * 262.76991 * 16 15 13 39 39 H 1.09005 * 109.88076 * 141.61025 * 16 15 13 40 40 H 1.08002 * 119.54120 * 359.97438 * 21 20 18 41 41 H 1.07997 * 119.94743 * 180.27714 * 22 21 20 42 42 H 1.08001 * 119.11666 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.04728 * 180.02562 * 26 25 24 44 44 H 1.07995 * 120.91772 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.29491 * 0.02794 * 29 20 18 46 46 H 1.09004 * 110.36355 * 217.03002 * 30 17 16 47 47 H 1.09006 * 110.45586 * 94.75677 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1438 -0.0091 2.3771 6 1 1.8870 1.0388 2.4256 7 6 2.6010 -0.6649 3.5119 8 7 2.9143 -1.9419 3.4526 9 14 2.7715 0.2648 5.1231 10 1 1.4471 0.8009 5.5277 11 1 3.2760 -0.6549 6.1742 12 1 3.7276 1.3875 4.9479 13 6 2.0400 -0.7212 -1.2493 14 1 1.6841 -1.7511 -1.2760 15 6 3.5884 -0.6649 -1.3309 16 6 3.8591 -0.7795 -2.8459 17 7 2.6354 -0.3546 -3.5413 18 6 2.4596 -0.3296 -4.8773 19 8 1.4379 0.1315 -5.3474 20 6 3.5091 -0.8627 -5.7707 21 6 3.2521 -1.0005 -7.1464 22 6 4.2015 -1.4816 -7.9883 23 6 5.4607 -1.8633 -7.4884 24 7 6.4038 -2.3453 -8.3035 25 6 7.5804 -2.7047 -7.8498 26 6 7.9081 -2.6029 -6.4995 27 6 6.9911 -2.1184 -5.6108 28 6 5.7280 -1.7333 -6.1023 29 6 4.7385 -1.2289 -5.2471 30 6 1.6329 0.0405 -2.5352 31 1 -0.3633 0.4753 -0.9112 32 1 -0.3634 -1.0267 0.0438 33 1 -0.3633 0.5514 0.8672 34 1 2.2489 -1.6319 1.1526 35 1 3.2342 -2.4002 4.2454 36 1 3.9608 0.2834 -0.9433 37 1 4.0336 -1.5031 -0.7950 38 1 4.0923 -1.8126 -3.1036 39 1 4.6886 -0.1295 -3.1244 40 1 2.2873 -0.7152 -7.5391 41 1 3.9887 -1.5768 -9.0429 42 1 8.3154 -3.0891 -8.5414 43 1 8.8859 -2.9066 -6.1561 44 1 7.2279 -2.0321 -4.5607 45 1 4.9325 -1.1268 -4.1896 46 1 0.6354 -0.2610 -2.8550 47 1 1.6670 1.1167 -2.3655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325435702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:19 Heat of formation + Delta-G solvation = 36.422710 kcal Electronic energy + Delta-G solvation = -28490.007639 eV Core-core repulsion = 24637.819275 eV Total energy + Delta-G solvation = -3852.188364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.11768 -41.09518 -39.20059 -37.71104 -36.89557 -34.70007 -34.17544 -32.34569 -31.53958 -31.33236 -30.63635 -28.77146 -26.66108 -25.81938 -24.93723 -24.15891 -23.49982 -22.51262 -21.22614 -21.05064 -19.50037 -19.04297 -18.38528 -17.91796 -17.37031 -17.19337 -16.57392 -16.33152 -15.74146 -15.54521 -15.47975 -15.28376 -15.01979 -14.89502 -14.73425 -14.39576 -14.13728 -14.01244 -13.90717 -13.81316 -13.47377 -13.25561 -13.09927 -12.75178 -12.70549 -12.69985 -12.41592 -12.24868 -12.16717 -11.95940 -11.61966 -11.57004 -11.53297 -11.31921 -11.15669 -10.88254 -10.44552 -9.95150 -9.70295 -9.36447 -8.95011 -7.88689 -5.15214 -0.82580 -0.34215 0.86638 1.35409 1.50980 1.52174 1.57946 1.79771 2.21997 2.60106 3.07001 3.18287 3.34438 3.44662 3.45190 3.60400 3.67111 3.74724 3.85344 3.99545 4.01644 4.05668 4.18707 4.25435 4.32940 4.34297 4.44903 4.52717 4.58158 4.66073 4.70822 4.72448 4.81313 4.88207 4.92964 4.97314 5.02026 5.06161 5.11646 5.20284 5.24780 5.26652 5.33699 5.39614 5.48231 5.57628 5.62161 5.76450 6.33133 6.36329 6.88986 6.95515 7.41034 8.16786 8.40685 9.34288 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.002395 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.558282 B =11689.201402 C =13169.558679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.729 5.729 5 C -0.231 4.231 6 H 0.072 0.928 7 C -0.072 4.072 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.284 1.284 11 H -0.299 1.299 12 H -0.278 1.278 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.114 4.114 16 C 0.087 3.913 17 N -0.608 5.608 18 C 0.569 3.431 19 O -0.578 6.578 20 C -0.146 4.146 21 C -0.061 4.061 22 C -0.108 4.108 23 C 0.123 3.877 24 N -0.513 5.513 25 C 0.139 3.861 26 C -0.174 4.174 27 C -0.050 4.050 28 C -0.129 4.129 29 C -0.075 4.075 30 C 0.120 3.880 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.191 0.809 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.190 0.810 46 H 0.072 0.928 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.246 -1.071 -21.923 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.369 5.369 5 C -0.363 4.363 6 H 0.090 0.910 7 C -0.264 4.264 8 N -0.618 5.618 9 Si 0.793 3.207 10 H -0.211 1.211 11 H -0.225 1.225 12 H -0.204 1.204 13 C -0.114 4.114 14 H 0.096 0.904 15 C -0.151 4.151 16 C -0.034 4.034 17 N -0.340 5.340 18 C 0.360 3.640 19 O -0.460 6.460 20 C -0.149 4.149 21 C -0.081 4.081 22 C -0.127 4.127 23 C 0.002 3.998 24 N -0.222 5.222 25 C -0.033 4.033 26 C -0.193 4.193 27 C -0.075 4.075 28 C -0.132 4.132 29 C -0.093 4.093 30 C -0.003 4.003 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.208 0.792 43 H 0.194 0.806 44 H 0.190 0.810 45 H 0.206 0.794 46 H 0.091 0.909 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.399 -0.706 -23.005 25.256 hybrid contribution -0.157 0.086 1.914 1.922 sum 10.242 -0.620 -21.091 23.455 Atomic orbital electron populations 1.22384 0.98395 1.00766 1.00570 1.20285 0.92215 0.94994 0.85075 0.93337 1.42488 1.78321 1.10348 1.05750 1.19502 1.34566 0.94021 0.88208 0.90984 1.25394 1.03382 0.96763 1.00905 1.69782 1.52900 1.09924 1.29184 0.85362 0.77716 0.77439 0.80146 1.21067 1.22517 1.20443 1.22455 0.96440 0.99637 0.92845 0.90383 1.22582 0.95029 1.03886 0.93647 1.22827 0.86987 1.01390 0.92181 1.48441 1.16778 1.64321 1.04453 1.18200 0.86496 0.78408 0.80911 1.90747 1.31104 1.48610 1.75536 1.19811 0.94951 1.05683 0.94412 1.20887 0.99999 0.95801 0.91462 1.20808 0.91035 0.99726 1.01084 1.19286 0.94330 0.96187 0.90020 1.68107 1.02728 1.12591 1.38731 1.23733 0.92682 0.91281 0.95562 1.22344 1.02496 1.00576 0.93902 1.22008 0.90425 0.92628 1.02462 1.19050 0.96828 1.03209 0.94065 1.23253 0.90721 0.92335 1.02998 1.22227 0.92189 0.99498 0.86393 0.91588 0.94029 0.94495 0.79375 0.94221 0.90554 0.89737 0.88498 0.87889 0.84504 0.83335 0.79241 0.80613 0.81006 0.79373 0.90920 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.44 9.35 71.98 0.67 -4.77 16 2 C 0.18 6.46 2.40 44.99 0.11 6.57 16 3 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 4 N -0.73 -33.38 4.87 -322.94 -1.57 -34.96 16 5 C -0.23 -12.01 9.93 84.03 0.83 -11.18 16 6 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 7 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 8 N -0.97 -56.33 13.06 21.65 0.28 -56.04 16 9 Si 0.96 44.51 29.55 68.60 2.03 46.54 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C -0.09 -2.65 2.63 -9.40 -0.02 -2.68 16 14 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -2.77 6.18 31.78 0.20 -2.58 16 16 C 0.09 1.62 4.87 86.73 0.42 2.05 16 17 N -0.61 -15.03 3.33 -832.30 -2.77 -17.80 16 18 C 0.57 15.99 7.80 86.76 0.68 16.66 16 19 O -0.58 -20.34 16.64 -3.90 -0.06 -20.40 16 20 C -0.15 -3.41 5.87 -20.10 -0.12 -3.53 16 21 C -0.06 -1.39 9.48 22.27 0.21 -1.18 16 22 C -0.11 -2.28 9.95 22.30 0.22 -2.05 16 23 C 0.12 2.61 6.61 40.35 0.27 2.87 16 24 N -0.51 -10.11 10.33 -188.45 -1.95 -12.05 16 25 C 0.14 1.70 11.15 85.06 0.95 2.65 16 26 C -0.17 -1.54 10.03 22.14 0.22 -1.32 16 27 C -0.05 -0.57 9.89 22.53 0.22 -0.35 16 28 C -0.13 -2.32 5.74 -21.29 -0.12 -2.44 16 29 C -0.07 -1.36 8.35 22.82 0.19 -1.17 16 30 C 0.12 3.16 5.43 86.85 0.47 3.63 16 31 H 0.07 1.85 7.25 -2.39 -0.02 1.83 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.37 18.44 7.80 -92.71 -0.72 17.72 16 35 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.08 1.98 8.04 -2.38 -0.02 1.96 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.10 1.48 6.68 -2.39 -0.02 1.47 16 39 H 0.10 1.43 6.78 -2.38 -0.02 1.42 16 40 H 0.14 3.12 7.64 -2.91 -0.02 3.10 16 41 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 43 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 44 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 45 H 0.19 2.54 2.72 -9.44 -0.03 2.52 16 46 H 0.07 2.03 7.95 -2.39 -0.02 2.01 16 47 H 0.07 1.96 8.03 -2.38 -0.02 1.94 16 Total: -1.00 -71.50 382.16 2.08 -69.42 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.26 Total: 27.57 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.87 Total: -2.28 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -6.01 Total: -120.85 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.50 2.08 -69.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325435702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.839 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds