Wall clock time and date at job start Tue Mar 31 2020 23:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46749 * 2 1 4 4 N 1.46500 * 109.46928 * 240.00800 * 2 1 3 5 5 C 1.36938 * 120.00470 * 84.99880 * 4 2 1 6 6 H 1.07999 * 119.99645 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00006 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00309 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99852 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47015 * 89.99758 * 9 7 5 11 11 H 1.48497 * 109.47160 * 209.99465 * 9 7 5 12 12 H 1.48500 * 109.47107 * 330.00038 * 9 7 5 13 13 C 1.52995 * 109.47429 * 120.00584 * 2 1 3 14 14 H 1.08991 * 110.88983 * 63.87538 * 13 2 1 15 15 C 1.55165 * 111.00170 * 299.99648 * 13 2 1 16 16 C 1.54316 * 103.10198 * 206.33470 * 15 13 2 17 17 N 1.47488 * 107.03752 * 22.24511 * 16 15 13 18 18 C 1.34779 * 125.59356 * 181.00795 * 17 16 15 19 19 O 1.21561 * 119.99746 * 174.23457 * 18 17 16 20 20 C 1.47764 * 119.99899 * 354.23255 * 18 17 16 21 21 C 1.40632 * 119.80095 * 187.08540 * 20 18 17 22 22 C 1.35700 * 120.91645 * 179.68554 * 21 20 18 23 23 C 1.40757 * 120.11254 * 0.60879 * 22 21 20 24 24 N 1.33651 * 120.82657 * 179.65212 * 23 22 21 25 25 C 1.31124 * 121.39242 * 180.02562 * 24 23 22 26 26 C 1.39312 * 121.76620 * 359.97438 * 25 24 23 27 27 C 1.36576 * 119.90779 * 0.02562 * 26 25 24 28 28 C 1.40894 * 118.15915 * 359.97438 * 27 26 25 29 29 C 1.38548 * 119.80414 * 7.35487 * 20 18 17 30 30 C 1.47426 * 108.75825 * 1.02033 * 17 16 15 31 31 H 1.08996 * 109.47051 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46833 * 299.99326 * 1 2 3 33 33 H 1.09004 * 109.47037 * 59.99444 * 1 2 3 34 34 H 0.97000 * 119.99615 * 264.99421 * 4 2 1 35 35 H 0.96994 * 120.00216 * 179.97438 * 8 7 5 36 36 H 1.08996 * 110.72006 * 324.78985 * 15 13 2 37 37 H 1.09001 * 110.71418 * 87.88269 * 15 13 2 38 38 H 1.09002 * 109.88553 * 141.70241 * 16 15 13 39 39 H 1.09000 * 109.88538 * 262.86632 * 16 15 13 40 40 H 1.07996 * 119.54135 * 0.02562 * 21 20 18 41 41 H 1.08003 * 119.94522 * 180.28183 * 22 21 20 42 42 H 1.07998 * 119.11510 * 179.97438 * 25 24 23 43 43 H 1.08010 * 120.04528 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.92373 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.30089 * 0.02647 * 29 20 18 46 46 H 1.08990 * 110.37068 * 217.05547 * 30 17 16 47 47 H 1.09001 * 110.45548 * 94.77669 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6904 -1.1963 5 6 2.1491 -0.0073 -2.3758 6 1 1.8918 1.0405 -2.4243 7 6 2.6112 -0.6617 -3.5094 8 7 2.9243 -1.9388 -3.4504 9 14 2.7889 0.2701 -5.1186 10 1 4.1512 0.8552 -5.2040 11 1 2.5781 -0.6612 -6.2558 12 1 1.7789 1.3573 -5.1752 13 6 2.0401 -0.7213 1.2491 14 1 1.7469 -1.7710 1.2386 15 6 1.5427 -0.0179 2.5396 16 6 2.6218 -0.3891 3.5784 17 7 3.8429 -0.7366 2.8278 18 6 5.0101 -1.1364 3.3703 19 8 5.9216 -1.4985 2.6522 20 6 5.1816 -1.1346 4.8380 21 6 6.4439 -1.4080 5.3944 22 6 6.6284 -1.4060 6.7388 23 6 5.5469 -1.1406 7.5997 24 7 5.7110 -1.1418 8.9261 25 6 4.7112 -0.8965 9.7383 26 6 3.4306 -0.6223 9.2631 27 6 3.1924 -0.6050 7.9184 28 6 4.2692 -0.8690 7.0490 29 6 4.0968 -0.8690 5.6578 30 6 3.5760 -0.5742 1.3870 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2491 -1.6316 -1.1528 35 1 3.2469 -2.3961 -4.2426 36 1 1.4991 1.0619 2.3978 37 1 0.5691 -0.4057 2.8393 38 1 2.8149 0.4613 4.2324 39 1 2.2908 -1.2445 4.1673 40 1 7.2792 -1.6171 4.7426 41 1 7.6056 -1.6137 7.1492 42 1 4.8852 -0.9073 10.8041 43 1 2.6273 -0.4237 9.9573 44 1 2.2060 -0.3947 7.5322 45 1 3.1270 -0.6639 5.2289 46 1 4.0842 -1.3519 0.8171 47 1 3.8944 0.4121 1.0494 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325435703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:23 Heat of formation + Delta-G solvation = 34.846631 kcal Electronic energy + Delta-G solvation = -28519.914061 eV Core-core repulsion = 24667.657353 eV Total energy + Delta-G solvation = -3852.256708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.10633 -41.06918 -39.20059 -37.71787 -36.88979 -34.70200 -34.21263 -32.36959 -31.57615 -31.36727 -30.07078 -29.34913 -26.30279 -25.95802 -24.95639 -24.14229 -23.50653 -22.56516 -21.14180 -21.06014 -19.51726 -19.07230 -18.36742 -17.92221 -17.28569 -17.15760 -16.58824 -16.34642 -15.79792 -15.57486 -15.49398 -15.29954 -15.14794 -14.93704 -14.58358 -14.37726 -14.17704 -14.03002 -13.93861 -13.64986 -13.37477 -13.27247 -13.11018 -12.82216 -12.71320 -12.59721 -12.38695 -12.22782 -12.11409 -11.97622 -11.70497 -11.57134 -11.50578 -11.31559 -11.14149 -10.92686 -10.42364 -9.95003 -9.69655 -9.36227 -8.97652 -7.92067 -5.19278 -0.81276 -0.33966 0.88521 1.35528 1.45794 1.47764 1.55418 1.80440 2.22282 2.56882 3.07979 3.19233 3.35372 3.41978 3.47435 3.57620 3.72170 3.78110 3.86906 4.00453 4.02359 4.06835 4.19274 4.22038 4.32700 4.35799 4.50125 4.57811 4.62618 4.66859 4.72361 4.82970 4.86832 4.88492 4.94229 4.96208 5.02776 5.11150 5.13800 5.21664 5.24876 5.25862 5.34967 5.44355 5.48323 5.55115 5.68720 5.77967 6.30451 6.39274 6.91355 6.97486 7.36072 8.15007 8.34891 9.31635 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022415 B = 0.002292 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.871415 B =12212.456891 C =13224.339822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 H 0.047 0.953 4 N -0.739 5.739 5 C -0.229 4.229 6 H 0.077 0.923 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.293 1.293 11 H -0.299 1.299 12 H -0.266 1.266 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.113 4.113 16 C 0.078 3.922 17 N -0.610 5.610 18 C 0.560 3.440 19 O -0.590 6.590 20 C -0.145 4.145 21 C -0.066 4.066 22 C -0.109 4.109 23 C 0.123 3.877 24 N -0.516 5.516 25 C 0.138 3.862 26 C -0.173 4.173 27 C -0.044 4.044 28 C -0.128 4.128 29 C -0.069 4.069 30 C 0.122 3.878 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.031 0.969 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.146 0.854 42 H 0.189 0.811 43 H 0.180 0.820 44 H 0.182 0.818 45 H 0.200 0.800 46 H 0.037 0.963 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 5.632 32.179 33.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.379 5.379 5 C -0.361 4.361 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.220 1.220 11 H -0.226 1.226 12 H -0.190 1.190 13 C -0.113 4.113 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.042 4.042 17 N -0.342 5.342 18 C 0.351 3.649 19 O -0.472 6.472 20 C -0.148 4.148 21 C -0.087 4.087 22 C -0.127 4.127 23 C 0.002 3.998 24 N -0.225 5.225 25 C -0.033 4.033 26 C -0.192 4.192 27 C -0.069 4.069 28 C -0.130 4.130 29 C -0.087 4.087 30 C -0.001 4.001 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.113 0.887 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.206 0.794 43 H 0.197 0.803 44 H 0.199 0.801 45 H 0.216 0.784 46 H 0.056 0.944 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.593 5.400 31.946 32.723 hybrid contribution 0.403 -0.286 -2.144 2.200 sum -4.190 5.114 29.802 30.527 Atomic orbital electron populations 1.22275 0.96686 1.00998 1.01249 1.20441 0.93373 0.94725 0.84501 0.93538 1.42686 1.78485 1.10238 1.06478 1.19597 1.34124 0.94099 0.88251 0.90477 1.25524 1.03502 0.96841 1.01479 1.69820 1.53059 1.10273 1.29189 0.85222 0.77718 0.77547 0.79822 1.22047 1.22575 1.19044 1.22490 0.91897 1.00754 0.96135 0.90626 1.22816 0.99017 1.02240 0.91046 1.23069 0.83324 1.02116 0.95681 1.48613 1.11973 1.65287 1.08302 1.18455 0.81145 0.76820 0.88482 1.90775 1.42339 1.50155 1.63970 1.19753 0.96223 1.07647 0.91209 1.20859 0.96537 0.96073 0.95234 1.20766 0.99244 1.01101 0.91602 1.19245 0.92991 0.96776 0.90822 1.68097 1.35596 1.15657 1.03156 1.23755 0.88647 0.89741 1.01201 1.22365 0.99165 1.00825 0.96867 1.22036 0.98965 0.92643 0.93288 1.19065 0.95211 1.03976 0.94779 1.23312 1.00920 0.92579 0.91879 1.22064 0.97378 1.00277 0.80358 0.93966 0.89597 0.94960 0.79945 0.94366 0.88703 0.86213 0.87309 0.87639 0.85445 0.83671 0.79373 0.80261 0.80107 0.78436 0.94410 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.27 71.98 0.67 -3.87 16 2 C 0.18 6.24 2.43 44.99 0.11 6.35 16 3 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 4 N -0.74 -36.19 4.97 -322.94 -1.61 -37.79 16 5 C -0.23 -12.55 9.93 84.03 0.83 -11.71 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 8 N -0.97 -61.09 13.06 21.65 0.28 -60.80 16 9 Si 0.97 47.09 29.55 68.60 2.03 49.11 16 10 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 11 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C -0.09 -2.61 2.66 -9.40 -0.02 -2.63 16 14 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.11 -1.74 5.28 31.78 0.17 -1.57 16 16 C 0.08 1.16 4.88 86.64 0.42 1.59 16 17 N -0.61 -16.96 3.34 -835.00 -2.79 -19.75 16 18 C 0.56 18.37 7.80 86.76 0.68 19.05 16 19 O -0.59 -25.57 16.56 -3.91 -0.06 -25.64 16 20 C -0.15 -3.69 5.87 -20.10 -0.12 -3.81 16 21 C -0.07 -1.71 9.49 22.27 0.21 -1.50 16 22 C -0.11 -2.46 9.95 22.30 0.22 -2.24 16 23 C 0.12 2.59 6.61 40.35 0.27 2.85 16 24 N -0.52 -9.94 10.33 -188.46 -1.95 -11.89 16 25 C 0.14 1.50 11.15 85.06 0.95 2.44 16 26 C -0.17 -1.06 10.03 22.14 0.22 -0.84 16 27 C -0.04 -0.35 9.89 22.53 0.22 -0.13 16 28 C -0.13 -2.09 5.74 -21.29 -0.12 -2.21 16 29 C -0.07 -1.17 8.37 22.82 0.19 -0.98 16 30 C 0.12 4.20 6.26 86.86 0.54 4.74 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.75 7.27 -2.39 -0.02 1.73 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 35 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 37 H 0.12 1.11 8.11 -2.39 -0.02 1.09 16 38 H 0.11 1.02 6.75 -2.39 -0.02 1.00 16 39 H 0.11 1.04 6.74 -2.39 -0.02 1.03 16 40 H 0.13 3.51 7.63 -2.91 -0.02 3.49 16 41 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 42 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.18 -0.31 8.06 -2.91 -0.02 -0.33 16 44 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 45 H 0.20 2.00 2.68 -10.93 -0.03 1.97 16 46 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 47 H 0.06 2.15 7.98 -2.39 -0.02 2.13 16 Total: -1.00 -83.94 382.02 2.07 -81.87 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.26 Total: 23.66 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 5.91 Total: 1.23 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -6.06 Total: -130.24 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.06 Total: -25.64 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -83.94 2.07 -81.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325435703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.719 kcal (2) G-P(sol) polarization free energy of solvation -83.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds