Wall clock time and date at job start Tue Mar 31 2020 22:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.30604 * 2 1 4 4 C 1.54387 * 110.34280 * 237.71058 * 2 1 3 5 5 N 1.48145 * 104.61901 * 217.26202 * 4 2 1 6 6 C 1.34779 * 127.84047 * 219.60368 * 5 4 2 7 7 O 1.21544 * 120.00128 * 174.72407 * 6 5 4 8 8 C 1.47905 * 119.99840 * 354.72559 * 6 5 4 9 9 C 1.38896 * 121.11185 * 322.28240 * 8 6 5 10 10 C 1.39265 * 119.57784 * 179.77214 * 9 8 6 11 11 N 1.30997 * 121.88294 * 0.49537 * 10 9 8 12 12 C 1.33530 * 121.82914 * 359.75886 * 11 10 9 13 13 C 1.40712 * 120.97194 * 179.97438 * 12 11 10 14 14 C 1.36066 * 119.74093 * 180.02562 * 13 12 11 15 15 C 1.39349 * 121.05580 * 0.02562 * 14 13 12 16 16 C 1.36248 * 120.83982 * 0.02562 * 15 14 13 17 17 C 1.40106 * 119.64181 * 359.95887 * 16 15 14 18 18 C 1.48150 * 104.32380 * 39.58722 * 5 4 2 19 19 C 1.54287 * 110.34203 * 122.17501 * 2 1 3 20 20 H 1.09000 * 110.34018 * 237.74128 * 19 2 1 21 21 C 1.53000 * 110.34351 * 359.97438 * 19 2 1 22 22 N 1.46500 * 109.47109 * 184.99982 * 21 19 2 23 23 C 1.36940 * 120.00082 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99657 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99960 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99946 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99727 * 179.97438 * 25 23 22 28 28 H 1.48510 * 109.46733 * 90.00080 * 27 25 23 29 29 H 1.48501 * 109.47277 * 209.99831 * 27 25 23 30 30 H 1.48500 * 109.47334 * 330.00217 * 27 25 23 31 31 H 1.09002 * 109.47182 * 297.82295 * 1 2 3 32 32 H 1.09001 * 109.46786 * 177.82620 * 1 2 3 33 33 H 1.08995 * 109.47298 * 57.82647 * 1 2 3 34 34 H 1.09007 * 110.40900 * 336.04877 * 4 2 1 35 35 H 1.08996 * 110.40845 * 98.47823 * 4 2 1 36 36 H 1.08002 * 120.20911 * 359.97052 * 9 8 6 37 37 H 1.08002 * 119.06044 * 180.23618 * 10 9 8 38 38 H 1.07998 * 120.13092 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.47093 * 180.02562 * 14 13 12 40 40 H 1.07993 * 119.58103 * 179.97438 * 15 14 13 41 41 H 1.07993 * 120.18153 * 180.02562 * 16 15 14 42 42 H 1.09000 * 110.40791 * 201.63216 * 18 5 4 43 43 H 1.09006 * 110.50737 * 79.24519 * 18 5 4 44 44 H 1.08996 * 109.47301 * 305.00283 * 21 19 2 45 45 H 1.09000 * 109.47317 * 64.99980 * 21 19 2 46 46 H 0.96998 * 120.00071 * 359.97438 * 22 21 19 47 47 H 0.97007 * 119.99389 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 3.2664 -1.4824 -0.7212 6 6 4.4426 -1.6675 -1.3528 7 8 5.3704 -2.1916 -0.7682 8 6 4.6043 -1.2327 -2.7572 9 6 3.5689 -1.3660 -3.6735 10 6 3.7544 -0.9417 -4.9868 11 7 4.8871 -0.4244 -5.3934 12 6 5.9269 -0.2705 -4.5698 13 6 7.1357 0.2868 -5.0260 14 6 8.1794 0.4317 -4.1652 15 6 8.0731 0.0357 -2.8334 16 6 6.9188 -0.5087 -2.3566 17 6 5.8236 -0.6724 -3.2149 18 6 2.8802 -1.9416 0.6334 19 6 2.0664 -0.7704 1.2245 20 1 2.7096 -0.1270 1.8249 21 6 0.9062 -1.3009 2.0691 22 7 1.4329 -1.9242 3.2857 23 6 0.5746 -2.4738 4.2003 24 1 -0.4907 -2.4474 4.0248 25 6 1.0737 -3.0638 5.3534 26 7 2.3719 -3.0946 5.5679 27 14 -0.0973 -3.8129 6.6012 28 1 -0.3281 -5.2416 6.2679 29 1 0.4948 -3.7108 7.9593 30 1 -1.3896 -3.0820 6.5684 31 1 -0.3634 0.4797 0.9089 32 1 -0.3633 -1.0270 -0.0390 33 1 -0.3633 0.5472 -0.8698 34 1 1.3235 -1.4877 -1.5779 35 1 2.3401 -0.0816 -2.0205 36 1 2.6250 -1.7931 -3.3685 37 1 2.9424 -1.0457 -5.6914 38 1 7.2347 0.5984 -6.0553 39 1 9.1051 0.8603 -4.5198 40 1 8.9167 0.1612 -2.1709 41 1 6.8479 -0.8115 -1.3224 42 1 3.7673 -2.1313 1.2377 43 1 2.2645 -2.8390 0.5712 44 1 0.2467 -0.4763 2.3395 45 1 0.3471 -2.0399 1.4951 46 1 2.3897 -1.9482 3.4432 47 1 2.7206 -3.5073 6.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325530058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:04 Heat of formation + Delta-G solvation = 43.089687 kcal Electronic energy + Delta-G solvation = -28830.298107 eV Core-core repulsion = 24978.398845 eV Total energy + Delta-G solvation = -3851.899262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.38519 -39.94595 -38.10129 -37.37225 -34.76315 -33.76519 -32.95664 -31.22187 -30.87866 -30.42606 -29.00053 -26.93578 -25.59264 -24.78492 -23.88531 -23.46433 -22.53184 -22.06942 -19.85335 -18.97268 -18.54183 -17.72662 -17.42184 -16.84308 -16.42851 -15.77123 -15.52205 -15.24452 -14.83948 -14.66526 -14.53742 -14.38147 -14.16870 -13.88257 -13.60373 -13.59161 -13.21038 -12.94905 -12.48104 -12.21566 -12.09859 -12.04235 -12.01296 -11.86952 -11.75584 -11.64825 -11.00887 -10.87460 -10.83015 -10.55456 -10.48636 -10.42309 -10.23670 -9.96898 -9.70749 -9.61658 -9.10659 -8.89012 -8.80645 -8.53976 -6.94127 -5.77685 -3.07083 -0.13367 0.48116 1.47236 2.50512 2.65675 2.83982 3.42543 3.47424 3.49478 3.80941 3.92186 4.06425 4.35499 4.40471 4.50210 4.54318 4.57382 4.73531 4.80906 4.82545 4.91686 5.02806 5.19263 5.24358 5.29056 5.33322 5.39401 5.49797 5.53707 5.57253 5.71281 5.72551 5.73183 5.78019 5.87318 6.02331 6.03503 6.05370 6.08815 6.20407 6.21986 6.26225 6.35656 6.44902 6.53706 6.70468 6.79771 7.40737 7.53248 7.67960 7.94026 8.40651 9.51825 10.09069 10.42947 11.44946 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002452 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.718085 B =11415.274956 C =12347.909824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.079 0.921 4 C 0.099 3.901 5 N -0.613 5.613 6 C 0.576 3.424 7 O -0.524 6.524 8 C -0.057 4.057 9 C -0.144 4.144 10 C 0.128 3.872 11 N -0.462 5.462 12 C 0.126 3.874 13 C -0.098 4.098 14 C -0.097 4.097 15 C -0.116 4.116 16 C -0.089 4.089 17 C -0.068 4.068 18 C 0.116 3.884 19 C -0.105 4.105 20 H 0.082 0.918 21 C 0.163 3.837 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.147 0.853 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.028 0.972 45 H 0.023 0.977 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.524 9.020 -23.759 25.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.097 0.903 4 C -0.024 4.024 5 N -0.345 5.345 6 C 0.364 3.636 7 O -0.401 6.401 8 C -0.068 4.068 9 C -0.165 4.165 10 C -0.044 4.044 11 N -0.171 5.171 12 C 0.004 3.996 13 C -0.117 4.117 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.070 4.070 18 C -0.006 4.006 19 C -0.125 4.125 20 H 0.100 0.900 21 C 0.035 3.965 22 N -0.379 5.379 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.165 0.835 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.174 8.959 -24.247 26.362 hybrid contribution -0.487 -0.788 1.667 1.907 sum 4.687 8.172 -22.580 24.466 Atomic orbital electron populations 1.21904 0.93693 1.02711 1.02044 1.22066 0.96701 0.99206 0.93821 0.90305 1.22736 0.86689 0.95638 0.97353 1.48943 1.12322 1.54804 1.18467 1.17635 0.81436 0.79427 0.85134 1.90802 1.38587 1.43890 1.66789 1.20369 0.93933 0.98249 0.94256 1.22528 0.99328 1.00048 0.94547 1.22913 0.94880 0.92860 0.93754 1.67803 0.99746 1.12660 1.36868 1.18845 0.93843 0.98089 0.88794 1.20792 0.90902 0.99394 1.00566 1.20986 0.98772 0.98431 0.93468 1.21057 0.98194 0.98272 0.95827 1.21432 0.91909 0.96422 1.01028 1.18631 0.94011 0.99683 0.94704 1.22540 0.99895 0.97246 0.80883 1.22347 0.98216 0.96221 0.95706 0.89975 1.20848 0.92816 0.95147 0.87699 1.42422 1.06754 1.69036 1.19659 1.19192 0.89861 1.29603 0.98586 0.91185 1.24753 0.95839 1.01734 0.98591 1.69662 1.10586 1.49812 1.27924 0.86204 0.79857 0.79146 0.81042 1.21719 1.21779 1.20778 0.91232 0.91672 0.93037 0.90339 0.90397 0.83659 0.81669 0.84522 0.85087 0.85163 0.83522 0.89413 0.90003 0.95450 0.95909 0.78303 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.94 37.16 0.29 -1.18 16 2 C -0.10 -1.10 3.66 -89.22 -0.33 -1.42 16 3 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.10 1.00 4.88 -2.41 -0.01 0.98 16 5 N -0.61 -8.27 3.31 -170.39 -0.56 -8.83 16 6 C 0.58 8.55 7.27 -12.30 -0.09 8.46 16 7 O -0.52 -9.55 14.95 5.33 0.08 -9.47 16 8 C -0.06 -0.71 5.46 -104.34 -0.57 -1.28 16 9 C -0.14 -1.36 8.06 -38.96 -0.31 -1.67 16 10 C 0.13 1.13 11.14 -17.53 -0.20 0.93 16 11 N -0.46 -5.15 10.30 -11.01 -0.11 -5.26 16 12 C 0.13 1.49 6.61 -84.87 -0.56 0.93 16 13 C -0.10 -0.94 9.98 -39.43 -0.39 -1.34 16 14 C -0.10 -0.81 9.94 -39.95 -0.40 -1.21 16 15 C -0.12 -1.12 9.96 -39.88 -0.40 -1.52 16 16 C -0.09 -1.11 9.17 -39.60 -0.36 -1.48 16 17 C -0.07 -0.87 5.76 -106.52 -0.61 -1.48 16 18 C 0.12 1.82 6.43 -2.41 -0.02 1.80 16 19 C -0.11 -1.58 3.10 -89.22 -0.28 -1.86 16 20 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 21 C 0.16 2.99 4.40 -4.04 -0.02 2.97 16 22 N -0.73 -17.93 5.48 -59.91 -0.33 -18.26 16 23 C -0.24 -6.60 9.99 -15.06 -0.15 -6.76 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 27 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 31 H 0.07 0.77 6.67 -51.93 -0.35 0.43 16 32 H 0.06 0.68 6.90 -51.93 -0.36 0.32 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.67 7.67 -51.92 -0.40 0.27 16 35 H 0.08 0.67 6.54 -51.93 -0.34 0.33 16 36 H 0.15 1.05 6.60 -52.49 -0.35 0.71 16 37 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.15 2.04 5.88 -52.49 -0.31 1.74 16 42 H 0.09 1.59 7.85 -51.93 -0.41 1.19 16 43 H 0.08 1.34 7.75 -51.93 -0.40 0.93 16 44 H 0.03 0.51 6.49 -51.93 -0.34 0.17 16 45 H 0.02 0.42 6.94 -51.93 -0.36 0.06 16 46 H 0.38 10.00 7.61 -40.82 -0.31 9.69 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -33.65 376.91 -10.46 -44.10 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.42 Total: 7.81 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -4.49 Total: -5.59 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.28 Total: -59.75 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.47 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.65 -10.46 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325530058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.195 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds