Wall clock time and date at job start Tue Mar 31 2020 22:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.30604 * 2 1 4 4 C 1.54387 * 110.34280 * 237.71058 * 2 1 3 5 5 N 1.48145 * 104.61901 * 217.26202 * 4 2 1 6 6 C 1.34779 * 127.84047 * 219.60368 * 5 4 2 7 7 O 1.21544 * 120.00128 * 174.72407 * 6 5 4 8 8 C 1.47905 * 119.99840 * 354.72559 * 6 5 4 9 9 C 1.38896 * 121.11185 * 322.28240 * 8 6 5 10 10 C 1.39265 * 119.57784 * 179.77214 * 9 8 6 11 11 N 1.30997 * 121.88294 * 0.49537 * 10 9 8 12 12 C 1.33530 * 121.82914 * 359.75886 * 11 10 9 13 13 C 1.40712 * 120.97194 * 179.97438 * 12 11 10 14 14 C 1.36066 * 119.74093 * 180.02562 * 13 12 11 15 15 C 1.39349 * 121.05580 * 0.02562 * 14 13 12 16 16 C 1.36248 * 120.83982 * 0.02562 * 15 14 13 17 17 C 1.40106 * 119.64181 * 359.95887 * 16 15 14 18 18 C 1.48150 * 104.32380 * 39.58722 * 5 4 2 19 19 C 1.54287 * 110.34203 * 122.17501 * 2 1 3 20 20 H 1.09000 * 110.34018 * 237.74128 * 19 2 1 21 21 C 1.53000 * 110.34351 * 359.97438 * 19 2 1 22 22 N 1.46500 * 109.47109 * 184.99982 * 21 19 2 23 23 C 1.36940 * 120.00082 * 180.02562 * 22 21 19 24 24 H 1.07996 * 119.99657 * 359.97438 * 23 22 21 25 25 C 1.38812 * 119.99960 * 180.02562 * 23 22 21 26 26 N 1.31618 * 119.99946 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99727 * 179.97438 * 25 23 22 28 28 H 1.48510 * 109.46733 * 90.00080 * 27 25 23 29 29 H 1.48501 * 109.47277 * 209.99831 * 27 25 23 30 30 H 1.48500 * 109.47334 * 330.00217 * 27 25 23 31 31 H 1.09002 * 109.47182 * 297.82295 * 1 2 3 32 32 H 1.09001 * 109.46786 * 177.82620 * 1 2 3 33 33 H 1.08995 * 109.47298 * 57.82647 * 1 2 3 34 34 H 1.09007 * 110.40900 * 336.04877 * 4 2 1 35 35 H 1.08996 * 110.40845 * 98.47823 * 4 2 1 36 36 H 1.08002 * 120.20911 * 359.97052 * 9 8 6 37 37 H 1.08002 * 119.06044 * 180.23618 * 10 9 8 38 38 H 1.07998 * 120.13092 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.47093 * 180.02562 * 14 13 12 40 40 H 1.07993 * 119.58103 * 179.97438 * 15 14 13 41 41 H 1.07993 * 120.18153 * 180.02562 * 16 15 14 42 42 H 1.09000 * 110.40791 * 201.63216 * 18 5 4 43 43 H 1.09006 * 110.50737 * 79.24519 * 18 5 4 44 44 H 1.08996 * 109.47301 * 305.00283 * 21 19 2 45 45 H 1.09000 * 109.47317 * 64.99980 * 21 19 2 46 46 H 0.96998 * 120.00071 * 359.97438 * 22 21 19 47 47 H 0.97007 * 119.99389 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0223 0.0000 4 6 2.0667 -0.7733 -1.2237 5 7 3.2664 -1.4824 -0.7212 6 6 4.4426 -1.6675 -1.3528 7 8 5.3704 -2.1916 -0.7682 8 6 4.6043 -1.2327 -2.7572 9 6 3.5689 -1.3660 -3.6735 10 6 3.7544 -0.9417 -4.9868 11 7 4.8871 -0.4244 -5.3934 12 6 5.9269 -0.2705 -4.5698 13 6 7.1357 0.2868 -5.0260 14 6 8.1794 0.4317 -4.1652 15 6 8.0731 0.0357 -2.8334 16 6 6.9188 -0.5087 -2.3566 17 6 5.8236 -0.6724 -3.2149 18 6 2.8802 -1.9416 0.6334 19 6 2.0664 -0.7704 1.2245 20 1 2.7096 -0.1270 1.8249 21 6 0.9062 -1.3009 2.0691 22 7 1.4329 -1.9242 3.2857 23 6 0.5746 -2.4738 4.2003 24 1 -0.4907 -2.4474 4.0248 25 6 1.0737 -3.0638 5.3534 26 7 2.3719 -3.0946 5.5679 27 14 -0.0973 -3.8129 6.6012 28 1 -0.3281 -5.2416 6.2679 29 1 0.4948 -3.7108 7.9593 30 1 -1.3896 -3.0820 6.5684 31 1 -0.3634 0.4797 0.9089 32 1 -0.3633 -1.0270 -0.0390 33 1 -0.3633 0.5472 -0.8698 34 1 1.3235 -1.4877 -1.5779 35 1 2.3401 -0.0816 -2.0205 36 1 2.6250 -1.7931 -3.3685 37 1 2.9424 -1.0457 -5.6914 38 1 7.2347 0.5984 -6.0553 39 1 9.1051 0.8603 -4.5198 40 1 8.9167 0.1612 -2.1709 41 1 6.8479 -0.8115 -1.3224 42 1 3.7673 -2.1313 1.2377 43 1 2.2645 -2.8390 0.5712 44 1 0.2467 -0.4763 2.3395 45 1 0.3471 -2.0399 1.4951 46 1 2.3897 -1.9482 3.4432 47 1 2.7206 -3.5073 6.3736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325530058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:03 Heat of formation + Delta-G solvation = 21.694691 kcal Electronic energy + Delta-G solvation = -28831.225864 eV Core-core repulsion = 24978.398845 eV Total energy + Delta-G solvation = -3852.827019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.25289 -40.98863 -39.28635 -38.11979 -36.44893 -34.81001 -34.17215 -32.86593 -31.64486 -31.30921 -30.37364 -28.03565 -26.83690 -25.97578 -24.77737 -24.63958 -23.77008 -23.24947 -20.83806 -20.24986 -19.38952 -18.97313 -18.55683 -18.15245 -17.46363 -16.96021 -16.53741 -16.44709 -16.18531 -15.64003 -15.49132 -15.30254 -15.26374 -15.20691 -14.88059 -14.58879 -14.54439 -14.03420 -13.77873 -13.48796 -13.27281 -13.07246 -12.90288 -12.85537 -12.78298 -12.76127 -12.59004 -12.37771 -12.17002 -11.83267 -11.74400 -11.72336 -11.50552 -11.44199 -11.29326 -10.88225 -10.52101 -9.96176 -9.83558 -9.34559 -8.97886 -7.94308 -5.23229 -0.94724 -0.26606 0.61861 1.47125 1.48924 1.50705 1.57368 1.68156 1.94926 2.56304 3.01443 3.10340 3.27966 3.39570 3.50568 3.56545 3.62008 3.66758 3.80435 3.82148 4.07048 4.13203 4.15799 4.23063 4.35364 4.39268 4.41381 4.48249 4.50440 4.58419 4.60902 4.74790 4.79055 4.81931 4.82775 4.96085 4.99178 5.04364 5.13372 5.19633 5.24918 5.30431 5.42506 5.43856 5.44983 5.51647 5.56137 5.81386 6.27611 6.33032 6.77640 6.82005 7.33424 8.10593 8.31443 9.29542 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002452 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.718085 B =11415.274956 C =12347.909824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.088 0.912 4 C 0.099 3.901 5 N -0.610 5.610 6 C 0.572 3.428 7 O -0.573 6.573 8 C -0.084 4.084 9 C -0.123 4.123 10 C 0.133 3.867 11 N -0.473 5.473 12 C 0.107 3.893 13 C -0.100 4.100 14 C -0.092 4.092 15 C -0.108 4.108 16 C -0.125 4.125 17 C -0.086 4.086 18 C 0.121 3.879 19 C -0.098 4.098 20 H 0.062 0.938 21 C 0.165 3.835 22 N -0.750 5.750 23 C -0.239 4.239 24 H 0.081 0.919 25 C -0.080 4.080 26 N -0.973 5.973 27 Si 0.973 3.027 28 H -0.288 1.288 29 H -0.299 1.299 30 H -0.265 1.265 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.172 0.828 37 H 0.210 0.790 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.149 0.851 41 H 0.118 0.882 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.370 0.630 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 10.287 -27.140 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.342 5.342 6 C 0.362 3.638 7 O -0.454 6.454 8 C -0.095 4.095 9 C -0.143 4.143 10 C -0.040 4.040 11 N -0.181 5.181 12 C -0.014 4.014 13 C -0.118 4.118 14 C -0.112 4.112 15 C -0.126 4.126 16 C -0.144 4.144 17 C -0.089 4.089 18 C -0.002 4.002 19 C -0.118 4.118 20 H 0.080 0.920 21 C 0.039 3.961 22 N -0.393 5.393 23 C -0.371 4.371 24 H 0.099 0.901 25 C -0.272 4.272 26 N -0.624 5.624 27 Si 0.802 3.198 28 H -0.215 1.215 29 H -0.226 1.226 30 H -0.190 1.190 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.190 0.810 37 H 0.226 0.774 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.136 0.864 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.201 0.799 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.042 10.267 -27.679 29.678 hybrid contribution 0.152 -1.135 2.619 2.859 sum 3.195 9.132 -25.060 26.862 Atomic orbital electron populations 1.21878 0.92129 1.02976 1.02999 1.22060 0.97834 0.99111 0.91838 0.89357 1.23020 0.85576 0.96325 0.97286 1.48966 1.13165 1.54594 1.17426 1.18133 0.80927 0.78612 0.86160 1.90768 1.40276 1.46137 1.68185 1.20226 0.95414 1.00718 0.93129 1.22860 0.99164 0.98115 0.94199 1.23621 0.95163 0.91159 0.94014 1.67882 1.00303 1.13125 1.36814 1.19134 0.95067 0.98858 0.88360 1.21148 0.90364 0.98584 1.01714 1.21342 0.99937 0.97533 0.92370 1.21360 0.97616 0.96590 0.97023 1.21338 0.93707 0.99172 1.00134 1.18802 0.94185 1.00442 0.95470 1.22267 0.98235 0.97562 0.82117 1.22189 0.96800 0.95946 0.96822 0.91978 1.21024 0.93962 0.95125 0.86019 1.42707 1.05950 1.69341 1.21257 1.19658 0.90695 1.28048 0.98711 0.90090 1.25606 0.97312 1.03325 1.00992 1.69841 1.12576 1.51649 1.28367 0.85138 0.78356 0.78269 0.77999 1.21526 1.22588 1.19001 0.92412 0.91893 0.89808 0.87663 0.87942 0.81023 0.77370 0.82433 0.81456 0.83372 0.86392 0.93281 0.90571 0.94559 0.94764 0.79924 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 71.98 0.57 -1.82 16 2 C -0.09 -1.80 3.66 -9.88 -0.04 -1.84 16 3 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 4 C 0.10 1.73 4.88 86.53 0.42 2.15 16 5 N -0.61 -16.63 3.31 -811.26 -2.69 -19.31 16 6 C 0.57 17.82 7.27 86.80 0.63 18.45 16 7 O -0.57 -22.98 14.95 -3.85 -0.06 -23.04 16 8 C -0.08 -2.08 5.46 -19.68 -0.11 -2.19 16 9 C -0.12 -1.99 8.06 22.67 0.18 -1.81 16 10 C 0.13 1.86 11.14 85.06 0.95 2.80 16 11 N -0.47 -9.33 10.30 -188.73 -1.94 -11.28 16 12 C 0.11 2.39 6.61 40.35 0.27 2.66 16 13 C -0.10 -1.73 9.98 22.37 0.22 -1.51 16 14 C -0.09 -1.38 9.94 22.03 0.22 -1.16 16 15 C -0.11 -2.10 9.96 22.07 0.22 -1.88 16 16 C -0.12 -3.32 9.17 22.26 0.20 -3.12 16 17 C -0.09 -2.25 5.76 -21.09 -0.12 -2.37 16 18 C 0.12 4.01 6.43 86.53 0.56 4.56 16 19 C -0.10 -2.99 3.10 -9.89 -0.03 -3.02 16 20 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 21 C 0.16 6.03 4.40 86.38 0.38 6.41 16 22 N -0.75 -37.59 5.48 -343.46 -1.88 -39.47 16 23 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 25 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 26 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 27 Si 0.97 46.30 29.55 68.60 2.03 48.32 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 30 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 31 H 0.06 1.13 6.67 -2.39 -0.02 1.12 16 32 H 0.06 1.10 6.90 -2.39 -0.02 1.09 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 1.35 7.67 -2.38 -0.02 1.33 16 35 H 0.10 1.36 6.54 -2.39 -0.02 1.35 16 36 H 0.17 1.77 6.60 -2.91 -0.02 1.75 16 37 H 0.21 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 41 H 0.12 3.76 5.88 -2.91 -0.02 3.74 16 42 H 0.05 1.98 7.85 -2.39 -0.02 1.97 16 43 H 0.08 2.59 7.75 -2.38 -0.02 2.57 16 44 H 0.04 1.30 6.49 -2.39 -0.02 1.29 16 45 H 0.03 1.21 6.94 -2.39 -0.02 1.19 16 46 H 0.37 20.33 7.61 -92.71 -0.71 19.62 16 47 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -78.50 376.91 1.87 -76.62 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.30 Total: 29.02 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.84 Total: -0.22 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.23 Total: -130.70 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.50 1.87 -76.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325530058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.317 kcal (2) G-P(sol) polarization free energy of solvation -78.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds