Wall clock time and date at job start Tue Mar 31 2020 22:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.65868 * 2 1 4 4 C 1.54595 * 110.57255 * 123.39521 * 2 1 3 5 5 N 1.48121 * 103.42158 * 81.17128 * 4 2 1 6 6 C 1.34776 * 127.03070 * 219.28415 * 5 4 2 7 7 O 1.21540 * 120.00232 * 184.25103 * 6 5 4 8 8 C 1.47910 * 119.99894 * 4.24431 * 6 5 4 9 9 C 1.38889 * 121.11384 * 318.19765 * 8 6 5 10 10 C 1.39273 * 119.57567 * 179.97438 * 9 8 6 11 11 N 1.30997 * 121.88803 * 359.71201 * 10 9 8 12 12 C 1.33531 * 121.82560 * 0.58369 * 11 10 9 13 13 C 1.40714 * 120.98060 * 179.71764 * 12 11 10 14 14 C 1.36062 * 119.74516 * 179.72714 * 13 12 11 15 15 C 1.39348 * 121.05553 * 359.97438 * 14 13 12 16 16 C 1.36249 * 120.83870 * 0.02562 * 15 14 13 17 17 C 1.40096 * 119.64078 * 359.97438 * 16 15 14 18 18 C 1.47477 * 105.93489 * 39.01989 * 5 4 2 19 19 C 1.54003 * 107.08676 * 334.78256 * 18 5 4 20 20 H 1.09003 * 110.32996 * 120.19612 * 19 18 5 21 21 C 1.53003 * 110.32358 * 242.31229 * 19 18 5 22 22 N 1.46497 * 109.47077 * 293.54022 * 21 19 18 23 23 C 1.36935 * 119.99961 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00108 * 359.97438 * 23 22 21 25 25 C 1.38817 * 120.00187 * 180.02562 * 23 22 21 26 26 N 1.31612 * 120.00077 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99701 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47255 * 90.00122 * 27 25 23 29 29 H 1.48502 * 109.47011 * 210.00148 * 27 25 23 30 30 H 1.48505 * 109.47337 * 330.00021 * 27 25 23 31 31 H 1.08998 * 109.47395 * 183.19532 * 1 2 3 32 32 H 1.09005 * 109.47171 * 303.19290 * 1 2 3 33 33 H 1.08999 * 109.47295 * 63.18916 * 1 2 3 34 34 H 1.08992 * 110.61987 * 322.65217 * 4 2 1 35 35 H 1.09009 * 110.54367 * 199.64450 * 4 2 1 36 36 H 1.08000 * 120.21047 * 359.95916 * 9 8 6 37 37 H 1.08000 * 119.05372 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.12395 * 359.69588 * 13 12 11 39 39 H 1.08003 * 119.46834 * 180.02562 * 14 13 12 40 40 H 1.07994 * 119.58218 * 179.97438 * 15 14 13 41 41 H 1.07994 * 120.17836 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.91180 * 94.14193 * 18 5 4 43 43 H 1.08993 * 109.91590 * 215.41618 * 18 5 4 44 44 H 1.08994 * 109.47286 * 53.54417 * 21 19 18 45 45 H 1.08999 * 109.46788 * 173.54325 * 21 19 18 46 46 H 0.97006 * 120.00170 * 0.02562 * 22 21 19 47 47 H 0.96999 * 119.99632 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0732 -0.7966 1.2084 5 7 1.9870 -2.2052 0.7584 6 6 1.6219 -3.2722 1.4965 7 8 1.6697 -4.3879 1.0169 8 6 1.1633 -3.0853 2.8902 9 6 1.8054 -2.1979 3.7441 10 6 1.3462 -2.0467 5.0503 11 7 0.3153 -2.7160 5.5032 12 6 -0.3468 -3.5901 4.7411 13 6 -1.4485 -4.3040 5.2478 14 6 -2.1083 -5.1844 4.4474 15 6 -1.7117 -5.3931 3.1280 16 6 -0.6497 -4.7199 2.6032 17 6 0.0529 -3.8056 3.3988 18 6 2.3761 -2.2003 -0.6641 19 6 2.0775 -0.7916 -1.2101 20 1 2.9909 -0.3287 -1.5835 21 6 1.0270 -0.8636 -2.3202 22 7 1.5842 -1.5730 -3.4745 23 6 0.8218 -1.7602 -4.5964 24 1 -0.1905 -1.3852 -4.6302 25 6 1.3495 -2.4328 -5.6901 26 7 0.6165 -2.6132 -6.7682 27 14 3.1001 -3.0820 -5.6314 28 1 3.0969 -4.4668 -5.0954 29 1 3.6739 -3.0827 -7.0011 30 1 3.9214 -2.2124 -4.7512 31 1 -0.3634 -1.0260 0.0573 32 1 -0.3634 0.5626 0.8600 33 1 -0.3634 0.4635 -0.9172 34 1 1.4489 -0.6346 2.0869 35 1 3.1077 -0.5213 1.4142 36 1 2.6555 -1.6290 3.3976 37 1 1.8515 -1.3540 5.7070 38 1 -1.7687 -4.1539 6.2683 39 1 -2.9536 -5.7296 4.8408 40 1 -2.2523 -6.0980 2.5139 41 1 -0.3518 -4.8896 1.5791 42 1 3.4401 -2.4173 -0.7587 43 1 1.7935 -2.9416 -1.2109 44 1 0.1489 -1.3964 -1.9555 45 1 0.7423 0.1458 -2.6169 46 1 2.4933 -1.9101 -3.4441 47 1 0.9855 -3.0829 -7.5325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325530061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:08 Heat of formation + Delta-G solvation = 46.366762 kcal Electronic energy + Delta-G solvation = -29339.420104 eV Core-core repulsion = 25487.662946 eV Total energy + Delta-G solvation = -3851.757158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.42898 -40.08154 -38.14816 -37.37749 -34.93361 -33.80115 -32.81617 -31.41048 -30.90314 -30.46235 -29.34797 -27.22732 -25.88935 -24.89665 -23.90116 -23.34513 -22.47725 -21.62746 -19.85949 -19.36816 -18.62956 -17.76307 -17.62555 -17.09276 -16.47842 -16.28892 -15.41053 -15.12068 -14.80871 -14.72115 -14.43699 -14.20322 -14.16199 -14.10869 -13.73027 -13.35028 -13.28792 -13.07210 -12.66236 -12.57290 -12.16093 -12.10275 -11.97137 -11.85859 -11.80689 -11.65520 -11.34114 -10.96260 -10.90454 -10.66116 -10.54325 -10.47760 -10.35556 -10.06942 -9.65368 -9.60172 -9.11004 -8.92548 -8.81116 -8.53907 -7.25599 -5.78025 -3.14053 -0.13130 0.47291 1.47899 2.46397 2.59858 2.81527 3.36225 3.40031 3.45289 3.80113 3.90785 4.01129 4.31176 4.37933 4.39840 4.53325 4.58101 4.60776 4.75453 4.79799 4.89147 5.02330 5.10633 5.18361 5.20005 5.27560 5.28687 5.41757 5.47798 5.52591 5.60515 5.63382 5.70533 5.72486 5.77346 5.84885 6.00094 6.00682 6.03045 6.13328 6.15572 6.21370 6.23459 6.31675 6.53689 6.57532 6.70616 7.31509 7.52314 7.89593 7.97271 8.40631 9.19220 9.91574 10.10449 11.40386 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.002993 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.625356 B = 9354.404504 C =10098.353487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.093 3.907 5 N -0.606 5.606 6 C 0.574 3.426 7 O -0.521 6.521 8 C -0.054 4.054 9 C -0.148 4.148 10 C 0.128 3.872 11 N -0.462 5.462 12 C 0.127 3.873 13 C -0.098 4.098 14 C -0.095 4.095 15 C -0.114 4.114 16 C -0.089 4.089 17 C -0.067 4.067 18 C 0.109 3.891 19 C -0.109 4.109 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.757 5.757 23 C -0.245 4.245 24 H 0.090 0.910 25 C 0.006 3.994 26 N -0.934 5.934 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.360 0.640 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 3.280 27.258 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.030 4.030 5 N -0.339 5.339 6 C 0.362 3.638 7 O -0.398 6.398 8 C -0.065 4.065 9 C -0.169 4.169 10 C -0.044 4.044 11 N -0.171 5.171 12 C 0.006 3.994 13 C -0.117 4.117 14 C -0.115 4.115 15 C -0.132 4.132 16 C -0.107 4.107 17 C -0.070 4.070 18 C -0.013 4.013 19 C -0.128 4.128 20 H 0.105 0.895 21 C 0.039 3.961 22 N -0.403 5.403 23 C -0.375 4.375 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.713 3.287 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.085 0.915 43 H 0.111 0.889 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.163 2.642 27.719 27.845 hybrid contribution 1.695 -0.548 -1.024 2.055 sum 1.532 2.094 26.695 26.821 Atomic orbital electron populations 1.21840 0.94039 1.02260 1.02156 1.22189 0.96932 0.99012 0.93497 0.88998 1.22849 1.01264 0.80482 0.98357 1.48676 1.65726 1.07191 1.12282 1.17663 0.77798 0.83782 0.84606 1.90828 1.53780 1.23107 1.72071 1.20338 0.95699 0.96154 0.94307 1.22498 1.01265 0.97962 0.95156 1.22894 0.92123 0.96300 0.93124 1.67801 1.06945 1.05603 1.36708 1.18833 0.96029 0.95312 0.89274 1.20794 0.94148 0.96138 1.00606 1.20995 0.99431 0.97268 0.93831 1.21068 0.96814 0.99685 0.95586 1.21364 0.94253 0.94150 1.00958 1.18608 0.95707 0.97914 0.94777 1.22264 1.00454 0.99012 0.79553 1.22421 1.00694 0.93976 0.95715 0.89452 1.20776 0.93682 0.95879 0.85757 1.42754 1.14291 1.68878 1.14341 1.19027 0.97277 1.30563 0.90606 0.89246 1.24669 0.97671 1.00604 0.96085 1.69697 1.36272 1.47099 1.05071 0.86572 0.86022 0.79249 0.76837 1.20940 1.21697 1.20352 0.92458 0.93023 0.91118 0.89727 0.90348 0.83744 0.81727 0.84493 0.85025 0.85063 0.83792 0.91478 0.88944 0.94957 0.95075 0.80742 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 7.97 37.16 0.30 -1.32 16 2 C -0.10 -0.98 3.60 -88.93 -0.32 -1.30 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.09 0.84 4.93 -2.31 -0.01 0.83 16 5 N -0.61 -7.75 3.19 -171.07 -0.55 -8.30 16 6 C 0.57 8.33 7.14 -12.30 -0.09 8.24 16 7 O -0.52 -9.48 15.35 5.33 0.08 -9.39 16 8 C -0.05 -0.66 5.47 -104.34 -0.57 -1.23 16 9 C -0.15 -1.33 7.87 -38.96 -0.31 -1.63 16 10 C 0.13 1.08 11.14 -17.52 -0.20 0.89 16 11 N -0.46 -5.09 10.30 -11.00 -0.11 -5.20 16 12 C 0.13 1.50 6.61 -84.87 -0.56 0.94 16 13 C -0.10 -0.96 9.98 -39.43 -0.39 -1.35 16 14 C -0.10 -0.83 9.94 -39.95 -0.40 -1.23 16 15 C -0.11 -1.16 9.96 -39.88 -0.40 -1.55 16 16 C -0.09 -1.14 9.18 -39.60 -0.36 -1.50 16 17 C -0.07 -0.87 5.76 -106.52 -0.61 -1.48 16 18 C 0.11 1.60 6.30 -2.98 -0.02 1.58 16 19 C -0.11 -1.48 2.99 -89.24 -0.27 -1.75 16 20 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 21 C 0.17 3.02 4.18 -4.04 -0.02 3.00 16 22 N -0.76 -17.56 5.13 -59.91 -0.31 -17.86 16 23 C -0.24 -6.91 10.47 -15.06 -0.16 -7.06 16 24 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 26 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 27 Si 0.88 22.18 27.73 -169.99 -4.71 17.46 16 28 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 30 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 31 H 0.06 0.75 7.61 -51.93 -0.40 0.35 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.84 6.68 -51.93 -0.35 0.50 16 34 H 0.08 0.66 5.89 -51.93 -0.31 0.36 16 35 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 36 H 0.14 0.92 6.58 -52.49 -0.35 0.58 16 37 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.14 2.09 6.04 -52.49 -0.32 1.77 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.09 1.68 7.52 -51.93 -0.39 1.29 16 44 H 0.03 0.62 6.86 -51.93 -0.36 0.27 16 45 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 46 H 0.36 8.15 5.37 -40.82 -0.22 7.93 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -35.21 374.84 -10.12 -45.33 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.47 Total: 6.85 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -4.48 Total: -5.86 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.19 Total: -60.05 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.21 -10.12 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325530061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.699 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds