Wall clock time and date at job start Tue Mar 31 2020 22:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.65868 * 2 1 4 4 C 1.54595 * 110.57255 * 123.39521 * 2 1 3 5 5 N 1.48121 * 103.42158 * 81.17128 * 4 2 1 6 6 C 1.34776 * 127.03070 * 219.28415 * 5 4 2 7 7 O 1.21540 * 120.00232 * 184.25103 * 6 5 4 8 8 C 1.47910 * 119.99894 * 4.24431 * 6 5 4 9 9 C 1.38889 * 121.11384 * 318.19765 * 8 6 5 10 10 C 1.39273 * 119.57567 * 179.97438 * 9 8 6 11 11 N 1.30997 * 121.88803 * 359.71201 * 10 9 8 12 12 C 1.33531 * 121.82560 * 0.58369 * 11 10 9 13 13 C 1.40714 * 120.98060 * 179.71764 * 12 11 10 14 14 C 1.36062 * 119.74516 * 179.72714 * 13 12 11 15 15 C 1.39348 * 121.05553 * 359.97438 * 14 13 12 16 16 C 1.36249 * 120.83870 * 0.02562 * 15 14 13 17 17 C 1.40096 * 119.64078 * 359.97438 * 16 15 14 18 18 C 1.47477 * 105.93489 * 39.01989 * 5 4 2 19 19 C 1.54003 * 107.08676 * 334.78256 * 18 5 4 20 20 H 1.09003 * 110.32996 * 120.19612 * 19 18 5 21 21 C 1.53003 * 110.32358 * 242.31229 * 19 18 5 22 22 N 1.46497 * 109.47077 * 293.54022 * 21 19 18 23 23 C 1.36935 * 119.99961 * 180.02562 * 22 21 19 24 24 H 1.08003 * 120.00108 * 359.97438 * 23 22 21 25 25 C 1.38817 * 120.00187 * 180.02562 * 23 22 21 26 26 N 1.31612 * 120.00077 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99701 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47255 * 90.00122 * 27 25 23 29 29 H 1.48502 * 109.47011 * 210.00148 * 27 25 23 30 30 H 1.48505 * 109.47337 * 330.00021 * 27 25 23 31 31 H 1.08998 * 109.47395 * 183.19532 * 1 2 3 32 32 H 1.09005 * 109.47171 * 303.19290 * 1 2 3 33 33 H 1.08999 * 109.47295 * 63.18916 * 1 2 3 34 34 H 1.08992 * 110.61987 * 322.65217 * 4 2 1 35 35 H 1.09009 * 110.54367 * 199.64450 * 4 2 1 36 36 H 1.08000 * 120.21047 * 359.95916 * 9 8 6 37 37 H 1.08000 * 119.05372 * 180.02562 * 10 9 8 38 38 H 1.07999 * 120.12395 * 359.69588 * 13 12 11 39 39 H 1.08003 * 119.46834 * 180.02562 * 14 13 12 40 40 H 1.07994 * 119.58218 * 179.97438 * 15 14 13 41 41 H 1.07994 * 120.17836 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.91180 * 94.14193 * 18 5 4 43 43 H 1.08993 * 109.91590 * 215.41618 * 18 5 4 44 44 H 1.08994 * 109.47286 * 53.54417 * 21 19 18 45 45 H 1.08999 * 109.46788 * 173.54325 * 21 19 18 46 46 H 0.97006 * 120.00170 * 0.02562 * 22 21 19 47 47 H 0.96999 * 119.99632 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0732 -0.7966 1.2084 5 7 1.9870 -2.2052 0.7584 6 6 1.6219 -3.2722 1.4965 7 8 1.6697 -4.3879 1.0169 8 6 1.1633 -3.0853 2.8902 9 6 1.8054 -2.1979 3.7441 10 6 1.3462 -2.0467 5.0503 11 7 0.3153 -2.7160 5.5032 12 6 -0.3468 -3.5901 4.7411 13 6 -1.4485 -4.3040 5.2478 14 6 -2.1083 -5.1844 4.4474 15 6 -1.7117 -5.3931 3.1280 16 6 -0.6497 -4.7199 2.6032 17 6 0.0529 -3.8056 3.3988 18 6 2.3761 -2.2003 -0.6641 19 6 2.0775 -0.7916 -1.2101 20 1 2.9909 -0.3287 -1.5835 21 6 1.0270 -0.8636 -2.3202 22 7 1.5842 -1.5730 -3.4745 23 6 0.8218 -1.7602 -4.5964 24 1 -0.1905 -1.3852 -4.6302 25 6 1.3495 -2.4328 -5.6901 26 7 0.6165 -2.6132 -6.7682 27 14 3.1001 -3.0820 -5.6314 28 1 3.0969 -4.4668 -5.0954 29 1 3.6739 -3.0827 -7.0011 30 1 3.9214 -2.2124 -4.7512 31 1 -0.3634 -1.0260 0.0573 32 1 -0.3634 0.5626 0.8600 33 1 -0.3634 0.4635 -0.9172 34 1 1.4489 -0.6346 2.0869 35 1 3.1077 -0.5213 1.4142 36 1 2.6555 -1.6290 3.3976 37 1 1.8515 -1.3540 5.7070 38 1 -1.7687 -4.1539 6.2683 39 1 -2.9536 -5.7296 4.8408 40 1 -2.2523 -6.0980 2.5139 41 1 -0.3518 -4.8896 1.5791 42 1 3.4401 -2.4173 -0.7587 43 1 1.7935 -2.9416 -1.2109 44 1 0.1489 -1.3964 -1.9555 45 1 0.7423 0.1458 -2.6169 46 1 2.4933 -1.9101 -3.4441 47 1 0.9855 -3.0829 -7.5325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325530061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:07 Heat of formation + Delta-G solvation = 22.760780 kcal Electronic energy + Delta-G solvation = -29340.443736 eV Core-core repulsion = 25487.662946 eV Total energy + Delta-G solvation = -3852.780790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.27653 -41.04638 -39.27693 -38.12929 -36.63801 -34.79071 -34.09740 -33.14973 -31.67082 -31.36327 -30.60838 -28.29284 -27.09245 -26.00255 -24.66376 -24.60533 -23.70814 -22.92174 -20.81179 -20.65390 -19.59078 -19.27016 -18.58139 -18.08403 -17.51733 -17.21590 -16.72409 -16.31632 -16.00891 -15.74656 -15.60296 -15.34239 -15.11129 -14.91630 -14.87353 -14.70018 -14.35279 -14.28827 -13.98866 -13.96013 -13.32875 -13.27757 -13.01899 -12.88551 -12.83359 -12.77444 -12.60723 -12.38796 -12.18086 -11.88565 -11.83621 -11.72465 -11.54880 -11.45002 -11.38225 -11.00120 -10.51632 -9.89143 -9.82101 -9.35273 -9.33004 -8.06632 -5.40061 -0.92880 -0.27069 0.62716 1.32936 1.38627 1.44541 1.46579 1.73879 1.95005 2.44772 3.01065 3.11376 3.25035 3.27953 3.39568 3.52323 3.62495 3.63712 3.69679 3.80814 3.95575 4.10224 4.14819 4.21733 4.23612 4.34459 4.45866 4.48654 4.51569 4.55592 4.60458 4.71361 4.75541 4.81312 4.88175 4.92874 4.95978 4.99635 5.02760 5.11673 5.19384 5.28832 5.29665 5.42158 5.43849 5.48550 5.71895 5.79801 6.17324 6.32255 6.78363 6.84810 7.04481 7.80289 7.98902 9.15141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.002993 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.625356 B = 9354.404504 C =10098.353487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.130 0.870 4 C 0.093 3.907 5 N -0.603 5.603 6 C 0.569 3.431 7 O -0.576 6.576 8 C -0.082 4.082 9 C -0.124 4.124 10 C 0.133 3.867 11 N -0.474 5.474 12 C 0.108 3.892 13 C -0.099 4.099 14 C -0.093 4.093 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.087 4.087 18 C 0.109 3.891 19 C -0.099 4.099 20 H 0.108 0.892 21 C 0.165 3.835 22 N -0.759 5.759 23 C -0.235 4.235 24 H 0.054 0.946 25 C -0.064 4.064 26 N -0.984 5.984 27 Si 0.953 3.047 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.243 1.243 31 H 0.025 0.975 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.179 0.821 37 H 0.211 0.789 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.145 0.855 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.045 0.955 44 H 0.013 0.987 45 H 0.035 0.965 46 H 0.366 0.634 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 5.646 31.260 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.148 0.852 4 C -0.028 4.028 5 N -0.335 5.335 6 C 0.358 3.642 7 O -0.456 6.456 8 C -0.093 4.093 9 C -0.144 4.144 10 C -0.039 4.039 11 N -0.183 5.183 12 C -0.013 4.013 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.090 4.090 18 C -0.014 4.014 19 C -0.118 4.118 20 H 0.126 0.874 21 C 0.039 3.961 22 N -0.404 5.404 23 C -0.366 4.366 24 H 0.072 0.928 25 C -0.255 4.255 26 N -0.635 5.635 27 Si 0.779 3.221 28 H -0.213 1.213 29 H -0.219 1.219 30 H -0.167 1.167 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.196 0.804 37 H 0.228 0.772 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.163 0.837 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.031 0.969 45 H 0.053 0.947 46 H 0.199 0.801 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.084 5.071 31.782 32.252 hybrid contribution 0.856 -1.232 -2.212 2.673 sum 2.940 3.839 29.571 29.963 Atomic orbital electron populations 1.21823 0.95278 1.00538 1.02631 1.22261 0.95817 1.00591 0.91977 0.85161 1.23208 1.03944 0.77441 0.98210 1.48735 1.64757 1.08643 1.11354 1.18124 0.77046 0.83349 0.85642 1.90787 1.55993 1.25365 1.73464 1.20239 0.97019 0.98516 0.93504 1.22890 1.00846 0.96039 0.94672 1.23664 0.91089 0.95804 0.93335 1.67882 1.07851 1.05820 1.36719 1.19099 0.97045 0.96249 0.88877 1.21153 0.93429 0.95549 1.01612 1.21320 1.00104 0.97099 0.92737 1.21338 0.95789 0.98995 0.96704 1.21247 0.96416 0.96568 1.00074 1.18782 0.96362 0.98326 0.95539 1.22128 1.00211 0.98453 0.80619 1.22340 0.99981 0.94147 0.95333 0.87387 1.20908 0.94696 0.94771 0.85689 1.42763 1.14149 1.69311 1.14226 1.19017 0.96326 1.29102 0.92166 0.92813 1.25523 1.02593 1.01653 0.95772 1.69883 1.38656 1.48842 1.06104 0.85444 0.80760 0.78648 0.77206 1.21274 1.21877 1.16705 0.95573 0.90386 0.92551 0.87894 0.86390 0.80420 0.77225 0.82346 0.81550 0.83713 0.87016 0.90324 0.93682 0.96930 0.94663 0.80121 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 7.97 71.98 0.57 -2.46 16 2 C -0.09 -1.47 3.60 -9.70 -0.03 -1.50 16 3 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.09 1.29 4.93 86.61 0.43 1.71 16 5 N -0.60 -14.88 3.19 -813.44 -2.60 -17.48 16 6 C 0.57 17.04 7.14 86.81 0.62 17.66 16 7 O -0.58 -22.76 15.35 -3.84 -0.06 -22.82 16 8 C -0.08 -1.97 5.47 -19.68 -0.11 -2.08 16 9 C -0.12 -1.80 7.87 22.68 0.18 -1.62 16 10 C 0.13 1.72 11.14 85.07 0.95 2.66 16 11 N -0.47 -9.17 10.30 -188.73 -1.94 -11.11 16 12 C 0.11 2.44 6.61 40.35 0.27 2.71 16 13 C -0.10 -1.79 9.98 22.37 0.22 -1.57 16 14 C -0.09 -1.51 9.94 22.03 0.22 -1.30 16 15 C -0.11 -2.34 9.96 22.07 0.22 -2.12 16 16 C -0.12 -3.48 9.18 22.26 0.20 -3.28 16 17 C -0.09 -2.30 5.76 -21.09 -0.12 -2.43 16 18 C 0.11 3.16 6.30 86.53 0.54 3.70 16 19 C -0.10 -2.50 2.99 -9.90 -0.03 -2.53 16 20 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 21 C 0.17 6.07 4.18 86.38 0.36 6.43 16 22 N -0.76 -35.62 5.13 -343.46 -1.76 -37.38 16 23 C -0.24 -13.75 10.47 84.03 0.88 -12.87 16 24 H 0.05 3.45 8.06 -2.91 -0.02 3.43 16 25 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 26 N -0.98 -64.60 13.97 21.65 0.30 -64.30 16 27 Si 0.95 46.43 27.73 68.60 1.90 48.33 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 29 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 30 H -0.24 -10.35 6.52 99.48 0.65 -9.70 16 31 H 0.03 0.69 7.61 -2.39 -0.02 0.67 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.32 6.68 -2.39 -0.02 1.30 16 34 H 0.10 1.12 5.89 -2.39 -0.01 1.10 16 35 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.18 1.29 6.58 -2.91 -0.02 1.27 16 37 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.11 3.78 6.04 -2.91 -0.02 3.76 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.04 1.74 7.52 -2.39 -0.02 1.72 16 44 H 0.01 0.52 6.86 -2.39 -0.02 0.50 16 45 H 0.04 1.29 7.56 -2.39 -0.02 1.27 16 46 H 0.37 16.25 5.37 -92.70 -0.50 15.75 16 47 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -85.18 374.84 2.12 -83.05 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.44 Total: 23.96 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.84 Total: -2.26 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.00 Total: -130.27 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.06 Total: -22.82 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Total: -85.18 2.12 -83.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325530061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.814 kcal (2) G-P(sol) polarization free energy of solvation -85.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds