Wall clock time and date at job start Tue Mar 31 2020 22:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64021 * 2 1 4 4 C 1.54324 * 110.72172 * 236.85572 * 2 1 3 5 5 N 1.47027 * 107.26933 * 263.65332 * 4 2 1 6 6 C 1.34773 * 125.64598 * 181.02828 * 5 4 2 7 7 O 1.21563 * 119.99756 * 185.30080 * 6 5 4 8 8 C 1.47774 * 120.00342 * 5.56988 * 6 5 4 9 9 C 1.40650 * 119.70243 * 171.35080 * 8 6 5 10 10 C 1.35848 * 120.87939 * 179.71056 * 9 8 6 11 11 C 1.40392 * 119.84177 * 0.56095 * 10 9 8 12 12 C 1.40635 * 121.98155 * 179.69391 * 11 10 9 13 13 C 1.36219 * 118.73523 * 180.02562 * 12 11 10 14 14 N 1.32596 * 121.90101 * 0.02562 * 13 12 11 15 15 C 1.31246 * 122.73939 * 359.97438 * 14 13 12 16 16 C 1.40550 * 119.88177 * 0.02562 * 15 14 13 17 17 C 1.38562 * 119.69978 * 351.62627 * 8 6 5 18 18 C 1.47422 * 108.70403 * 1.28290 * 5 4 2 19 19 C 1.55128 * 104.72362 * 335.55927 * 18 5 4 20 20 H 1.09007 * 111.18941 * 279.18562 * 19 18 5 21 21 C 1.52999 * 110.94123 * 155.28535 * 19 18 5 22 22 N 1.46505 * 109.47092 * 72.95472 * 21 19 18 23 23 C 1.36938 * 119.99938 * 180.02562 * 22 21 19 24 24 H 1.07997 * 119.99934 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99746 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00530 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99866 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47342 * 89.99628 * 27 25 23 29 29 H 1.48498 * 109.46987 * 209.99698 * 27 25 23 30 30 H 1.48502 * 109.46982 * 329.99447 * 27 25 23 31 31 H 1.09007 * 109.47246 * 181.68730 * 1 2 3 32 32 H 1.08997 * 109.47589 * 301.69056 * 1 2 3 33 33 H 1.09000 * 109.47057 * 61.69493 * 1 2 3 34 34 H 1.09001 * 109.88155 * 144.23966 * 4 2 1 35 35 H 1.08994 * 110.01290 * 23.13809 * 4 2 1 36 36 H 1.08001 * 119.55924 * 0.02562 * 9 8 6 37 37 H 1.08004 * 120.07955 * 180.27917 * 10 9 8 38 38 H 1.08000 * 120.63155 * 0.04732 * 12 11 10 39 39 H 1.07997 * 119.05136 * 180.02562 * 13 12 11 40 40 H 1.07990 * 120.05538 * 179.97438 * 15 14 13 41 41 H 1.08006 * 120.34571 * 0.02562 * 17 8 6 42 42 H 1.09004 * 110.36538 * 94.48441 * 18 5 4 43 43 H 1.08993 * 110.37468 * 216.80460 * 18 5 4 44 44 H 1.09005 * 109.47526 * 192.95239 * 21 19 18 45 45 H 1.08997 * 109.46989 * 312.95703 * 21 19 18 46 46 H 0.97003 * 119.99811 * 0.02562 * 22 21 19 47 47 H 0.96992 * 120.00710 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 2.3756 -2.1507 -0.7415 6 6 2.8903 -3.1436 -1.4935 7 8 3.0083 -4.2602 -1.0277 8 6 3.3167 -2.8736 -2.8824 9 6 4.0177 -3.8592 -3.6003 10 6 4.4160 -3.6386 -4.8802 11 6 4.1374 -2.4083 -5.4964 12 6 4.5341 -2.1296 -6.8165 13 6 4.2294 -0.9134 -7.3490 14 7 3.5731 0.0091 -6.6588 15 6 3.1719 -0.1801 -5.4236 16 6 3.4360 -1.4019 -4.7810 17 6 3.0273 -1.6496 -3.4637 18 6 2.0140 -2.2517 0.6842 19 6 2.0827 -0.7948 1.2125 20 1 3.1096 -0.5043 1.4348 21 6 1.1872 -0.6155 2.4400 22 7 1.8005 -1.2793 3.5931 23 6 1.1752 -1.2526 4.8110 24 1 0.2301 -0.7418 4.9217 25 6 1.7566 -1.8811 5.9036 26 7 2.9086 -2.5032 5.7689 27 14 0.9031 -1.8453 7.5649 28 1 0.0016 -3.0192 7.6837 29 1 1.9209 -1.8915 8.6453 30 1 0.1086 -0.5966 7.6864 31 1 -0.3634 -1.0273 0.0303 32 1 -0.3634 0.5398 0.8744 33 1 -0.3633 0.4873 -0.9048 34 1 2.9851 -0.3163 -1.5799 35 1 1.3272 -0.8252 -1.9997 36 1 4.2379 -4.8059 -3.1294 37 1 4.9496 -4.4063 -5.4210 38 1 5.0697 -2.8660 -7.3972 39 1 4.5312 -0.6941 -8.3625 40 1 2.6405 0.6018 -4.9017 41 1 2.4930 -0.8938 -2.9070 42 1 1.0050 -2.6497 0.7923 43 1 2.7296 -2.8808 1.2135 44 1 1.0703 0.4473 2.6525 45 1 0.2099 -1.0566 2.2443 46 1 2.6496 -1.7378 3.4937 47 1 3.3147 -2.9427 6.5323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325582458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:36 Heat of formation + Delta-G solvation = 56.001318 kcal Electronic energy + Delta-G solvation = -28589.052263 eV Core-core repulsion = 24737.712891 eV Total energy + Delta-G solvation = -3851.339372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.38831 -40.27127 -38.30535 -37.13194 -34.89073 -33.62210 -32.77936 -31.58856 -31.25865 -30.41503 -28.81976 -27.06806 -25.80378 -24.86880 -24.10205 -23.16472 -22.74759 -21.70467 -20.30219 -19.32622 -18.55294 -17.61379 -17.01766 -16.88666 -16.53949 -16.05374 -15.44835 -15.29402 -15.00571 -14.71376 -14.50916 -14.28278 -14.05938 -13.96885 -13.68695 -13.49030 -13.23257 -12.97788 -12.72482 -12.51538 -12.40048 -12.23100 -12.18153 -11.93618 -11.68698 -11.40734 -10.98738 -10.85542 -10.62458 -10.51395 -10.46023 -10.36421 -10.06952 -10.00239 -9.80698 -9.69012 -9.47678 -8.88407 -8.68178 -8.49462 -6.93753 -5.76638 -3.06133 -0.16580 0.37468 1.41488 2.28464 2.84780 3.13490 3.43749 3.48529 3.50470 3.71394 3.98093 4.04106 4.20719 4.31305 4.34335 4.45463 4.54706 4.64650 4.69600 4.75554 4.78188 4.89549 5.11685 5.17110 5.23192 5.26962 5.34515 5.42514 5.45474 5.48269 5.52630 5.58225 5.72226 5.76801 5.86975 5.92228 5.98625 5.99345 6.10262 6.14355 6.19025 6.25386 6.31966 6.37385 6.42253 6.65734 6.79025 7.43216 7.55141 7.69043 8.06680 8.41537 9.52799 10.09641 10.43581 11.46003 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.002259 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.514030 B =12389.430033 C =13263.283978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.090 3.910 5 N -0.609 5.609 6 C 0.566 3.434 7 O -0.531 6.531 8 C -0.121 4.121 9 C -0.047 4.047 10 C -0.122 4.122 11 C -0.010 4.010 12 C -0.160 4.160 13 C 0.081 3.919 14 N -0.492 5.492 15 C 0.156 3.844 16 C -0.122 4.122 17 C -0.085 4.085 18 C 0.117 3.883 19 C -0.101 4.101 20 H 0.087 0.913 21 C 0.166 3.834 22 N -0.734 5.734 23 C -0.241 4.241 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 4.545 -27.385 27.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.032 4.032 5 N -0.342 5.342 6 C 0.356 3.644 7 O -0.408 6.408 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.140 4.140 11 C -0.015 4.015 12 C -0.179 4.179 13 C -0.061 4.061 14 N -0.200 5.200 15 C -0.016 4.016 16 C -0.124 4.124 17 C -0.105 4.105 18 C -0.004 4.004 19 C -0.121 4.121 20 H 0.105 0.895 21 C 0.038 3.962 22 N -0.378 5.378 23 C -0.372 4.372 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.042 0.958 45 H 0.043 0.957 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.117 4.655 -27.580 27.992 hybrid contribution 0.157 -1.070 1.249 1.652 sum 1.274 3.584 -26.331 26.604 Atomic orbital electron populations 1.21857 0.93846 1.02546 1.02071 1.22271 0.96814 0.99291 0.93481 0.88952 1.22687 0.99799 0.83105 0.97651 1.48422 1.62275 1.11121 1.12365 1.17869 0.77819 0.83844 0.84910 1.90818 1.55430 1.21528 1.73064 1.19989 1.02365 0.95374 0.94659 1.21032 0.93352 0.98845 0.93477 1.20889 1.01660 0.96234 0.95202 1.18343 0.95223 0.93996 0.93950 1.21941 1.02009 0.99102 0.94880 1.22248 0.94612 0.89484 0.99806 1.67477 1.10751 1.33532 1.08215 1.23304 0.93822 0.94175 0.90290 1.19028 1.01720 0.96162 0.95537 1.23063 0.96361 0.97332 0.93744 1.22439 1.01579 0.98009 0.78391 1.22676 1.01298 0.93279 0.94846 0.89477 1.20634 0.94127 0.96032 0.85439 1.42387 1.25506 1.64664 1.05230 1.19191 1.02955 1.28561 0.86515 0.91166 1.24753 0.97264 1.00755 0.98159 1.69653 1.17943 1.40072 1.30329 0.86195 0.78343 0.77620 0.84048 1.21708 1.21793 1.20772 0.92251 0.91234 0.92756 0.90410 0.90361 0.84113 0.84506 0.84317 0.82909 0.81655 0.81000 0.90789 0.89679 0.95802 0.95657 0.78265 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 7.92 37.16 0.29 -1.14 16 2 C -0.10 -1.01 3.46 -88.79 -0.31 -1.32 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.09 0.84 4.45 -3.06 -0.01 0.82 16 5 N -0.61 -8.12 3.32 -177.35 -0.59 -8.71 16 6 C 0.57 8.37 7.80 -12.36 -0.10 8.28 16 7 O -0.53 -9.93 16.63 5.31 0.09 -9.84 16 8 C -0.12 -1.41 5.87 -104.97 -0.62 -2.02 16 9 C -0.05 -0.50 9.49 -39.53 -0.38 -0.88 16 10 C -0.12 -1.06 9.77 -39.63 -0.39 -1.45 16 11 C -0.01 -0.09 5.75 -106.74 -0.61 -0.70 16 12 C -0.16 -1.17 9.87 -39.40 -0.39 -1.56 16 13 C 0.08 0.63 11.07 -17.95 -0.20 0.43 16 14 N -0.49 -4.58 10.30 -13.12 -0.14 -4.71 16 15 C 0.16 1.27 11.05 -16.93 -0.19 1.08 16 16 C -0.12 -1.11 5.74 -106.88 -0.61 -1.73 16 17 C -0.09 -0.78 8.37 -38.75 -0.32 -1.11 16 18 C 0.12 1.85 5.99 -2.41 -0.01 1.83 16 19 C -0.10 -1.48 2.93 -88.35 -0.26 -1.74 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 21 C 0.17 3.05 4.54 -4.04 -0.02 3.03 16 22 N -0.73 -18.00 5.55 -59.91 -0.33 -18.33 16 23 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 24 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 27 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 31 H 0.06 0.65 7.35 -51.93 -0.38 0.27 16 32 H 0.07 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.60 6.66 -51.93 -0.35 0.25 16 35 H 0.08 0.57 6.49 -51.93 -0.34 0.23 16 36 H 0.14 1.51 7.63 -52.49 -0.40 1.11 16 37 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.17 1.22 2.71 -60.01 -0.16 1.05 16 42 H 0.07 1.22 7.48 -51.93 -0.39 0.83 16 43 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 44 H 0.02 0.44 8.05 -51.93 -0.42 0.03 16 45 H 0.03 0.47 6.95 -51.93 -0.36 0.11 16 46 H 0.38 10.03 7.67 -40.82 -0.31 9.72 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -34.64 378.31 -10.34 -44.98 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.40 Total: 6.52 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.37 Total: -5.43 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.33 Total: -59.26 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.64 -10.34 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325582458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.978 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds