Wall clock time and date at job start Tue Mar 31 2020 22:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.64021 * 2 1 4 4 C 1.54324 * 110.72172 * 236.85572 * 2 1 3 5 5 N 1.47027 * 107.26933 * 263.65332 * 4 2 1 6 6 C 1.34773 * 125.64598 * 181.02828 * 5 4 2 7 7 O 1.21563 * 119.99756 * 185.30080 * 6 5 4 8 8 C 1.47774 * 120.00342 * 5.56988 * 6 5 4 9 9 C 1.40650 * 119.70243 * 171.35080 * 8 6 5 10 10 C 1.35848 * 120.87939 * 179.71056 * 9 8 6 11 11 C 1.40392 * 119.84177 * 0.56095 * 10 9 8 12 12 C 1.40635 * 121.98155 * 179.69391 * 11 10 9 13 13 C 1.36219 * 118.73523 * 180.02562 * 12 11 10 14 14 N 1.32596 * 121.90101 * 0.02562 * 13 12 11 15 15 C 1.31246 * 122.73939 * 359.97438 * 14 13 12 16 16 C 1.40550 * 119.88177 * 0.02562 * 15 14 13 17 17 C 1.38562 * 119.69978 * 351.62627 * 8 6 5 18 18 C 1.47422 * 108.70403 * 1.28290 * 5 4 2 19 19 C 1.55128 * 104.72362 * 335.55927 * 18 5 4 20 20 H 1.09007 * 111.18941 * 279.18562 * 19 18 5 21 21 C 1.52999 * 110.94123 * 155.28535 * 19 18 5 22 22 N 1.46505 * 109.47092 * 72.95472 * 21 19 18 23 23 C 1.36938 * 119.99938 * 180.02562 * 22 21 19 24 24 H 1.07997 * 119.99934 * 359.97438 * 23 22 21 25 25 C 1.38809 * 119.99746 * 180.02562 * 23 22 21 26 26 N 1.31618 * 120.00530 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99866 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47342 * 89.99628 * 27 25 23 29 29 H 1.48498 * 109.46987 * 209.99698 * 27 25 23 30 30 H 1.48502 * 109.46982 * 329.99447 * 27 25 23 31 31 H 1.09007 * 109.47246 * 181.68730 * 1 2 3 32 32 H 1.08997 * 109.47589 * 301.69056 * 1 2 3 33 33 H 1.09000 * 109.47057 * 61.69493 * 1 2 3 34 34 H 1.09001 * 109.88155 * 144.23966 * 4 2 1 35 35 H 1.08994 * 110.01290 * 23.13809 * 4 2 1 36 36 H 1.08001 * 119.55924 * 0.02562 * 9 8 6 37 37 H 1.08004 * 120.07955 * 180.27917 * 10 9 8 38 38 H 1.08000 * 120.63155 * 0.04732 * 12 11 10 39 39 H 1.07997 * 119.05136 * 180.02562 * 13 12 11 40 40 H 1.07990 * 120.05538 * 179.97438 * 15 14 13 41 41 H 1.08006 * 120.34571 * 0.02562 * 17 8 6 42 42 H 1.09004 * 110.36538 * 94.48441 * 18 5 4 43 43 H 1.08993 * 110.37468 * 216.80460 * 18 5 4 44 44 H 1.09005 * 109.47526 * 192.95239 * 21 19 18 45 45 H 1.08997 * 109.46989 * 312.95703 * 21 19 18 46 46 H 0.97003 * 119.99811 * 0.02562 * 22 21 19 47 47 H 0.96992 * 120.00710 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 2.3756 -2.1507 -0.7415 6 6 2.8903 -3.1436 -1.4935 7 8 3.0083 -4.2602 -1.0277 8 6 3.3167 -2.8736 -2.8824 9 6 4.0177 -3.8592 -3.6003 10 6 4.4160 -3.6386 -4.8802 11 6 4.1374 -2.4083 -5.4964 12 6 4.5341 -2.1296 -6.8165 13 6 4.2294 -0.9134 -7.3490 14 7 3.5731 0.0091 -6.6588 15 6 3.1719 -0.1801 -5.4236 16 6 3.4360 -1.4019 -4.7810 17 6 3.0273 -1.6496 -3.4637 18 6 2.0140 -2.2517 0.6842 19 6 2.0827 -0.7948 1.2125 20 1 3.1096 -0.5043 1.4348 21 6 1.1872 -0.6155 2.4400 22 7 1.8005 -1.2793 3.5931 23 6 1.1752 -1.2526 4.8110 24 1 0.2301 -0.7418 4.9217 25 6 1.7566 -1.8811 5.9036 26 7 2.9086 -2.5032 5.7689 27 14 0.9031 -1.8453 7.5649 28 1 0.0016 -3.0192 7.6837 29 1 1.9209 -1.8915 8.6453 30 1 0.1086 -0.5966 7.6864 31 1 -0.3634 -1.0273 0.0303 32 1 -0.3634 0.5398 0.8744 33 1 -0.3633 0.4873 -0.9048 34 1 2.9851 -0.3163 -1.5799 35 1 1.3272 -0.8252 -1.9997 36 1 4.2379 -4.8059 -3.1294 37 1 4.9496 -4.4063 -5.4210 38 1 5.0697 -2.8660 -7.3972 39 1 4.5312 -0.6941 -8.3625 40 1 2.6405 0.6018 -4.9017 41 1 2.4930 -0.8938 -2.9070 42 1 1.0050 -2.6497 0.7923 43 1 2.7296 -2.8808 1.2135 44 1 1.0703 0.4473 2.6525 45 1 0.2099 -1.0566 2.2443 46 1 2.6496 -1.7378 3.4937 47 1 3.3147 -2.9427 6.5323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325582458.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:35 Heat of formation + Delta-G solvation = 33.605676 kcal Electronic energy + Delta-G solvation = -28590.023411 eV Core-core repulsion = 24737.712891 eV Total energy + Delta-G solvation = -3852.310520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.16456 -41.18523 -39.37739 -37.95702 -36.54475 -34.70124 -33.81066 -32.85357 -32.28922 -31.34739 -30.06912 -27.94876 -27.22468 -25.82144 -25.07124 -24.41398 -23.67678 -22.81110 -21.24921 -20.53572 -19.43755 -18.97244 -18.23609 -17.76477 -17.45431 -17.06122 -16.64429 -16.38059 -15.99263 -15.90883 -15.38625 -15.30729 -15.16973 -14.91044 -14.79598 -14.52854 -14.43505 -14.10492 -14.06848 -13.66874 -13.35978 -13.07774 -13.04141 -12.98836 -12.85318 -12.76122 -12.64546 -12.30650 -12.09852 -11.87551 -11.60579 -11.54478 -11.32730 -11.22720 -11.07048 -10.90658 -10.48439 -10.23278 -9.77724 -9.13338 -8.98823 -7.94538 -5.23463 -0.82219 -0.33787 0.77119 1.44358 1.46759 1.48929 1.57144 1.79038 2.26645 2.56105 3.05235 3.20304 3.38378 3.39485 3.46425 3.53979 3.67536 3.72560 3.82505 3.84939 4.00610 4.04147 4.12860 4.20585 4.30434 4.32487 4.43031 4.54134 4.61506 4.65160 4.66675 4.77557 4.78244 4.82668 4.83101 4.89114 4.93268 5.04656 5.08157 5.19435 5.25327 5.28243 5.32701 5.35498 5.50949 5.54742 5.59040 5.71698 6.27426 6.38032 6.95638 6.98071 7.33307 8.10501 8.31239 9.29203 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.002259 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.514030 B =12389.430033 C =13263.283978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.124 0.876 4 C 0.083 3.917 5 N -0.607 5.607 6 C 0.560 3.440 7 O -0.588 6.588 8 C -0.145 4.145 9 C -0.069 4.069 10 C -0.113 4.113 11 C -0.023 4.023 12 C -0.160 4.160 13 C 0.077 3.923 14 N -0.514 5.514 15 C 0.158 3.842 16 C -0.135 4.135 17 C -0.063 4.063 18 C 0.122 3.878 19 C -0.095 4.095 20 H 0.078 0.922 21 C 0.166 3.834 22 N -0.749 5.749 23 C -0.240 4.240 24 H 0.080 0.920 25 C -0.081 4.081 26 N -0.972 5.972 27 Si 0.974 3.026 28 H -0.290 1.290 29 H -0.297 1.297 30 H -0.265 1.265 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.177 0.823 40 H 0.198 0.802 41 H 0.196 0.804 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.036 0.964 45 H 0.028 0.972 46 H 0.371 0.629 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 7.471 -30.328 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.142 0.858 4 C -0.037 4.037 5 N -0.338 5.338 6 C 0.351 3.649 7 O -0.470 6.470 8 C -0.148 4.148 9 C -0.089 4.089 10 C -0.130 4.130 11 C -0.029 4.029 12 C -0.179 4.179 13 C -0.066 4.066 14 N -0.222 5.222 15 C -0.013 4.013 16 C -0.138 4.138 17 C -0.083 4.083 18 C -0.001 4.001 19 C -0.114 4.114 20 H 0.096 0.904 21 C 0.040 3.960 22 N -0.392 5.392 23 C -0.372 4.372 24 H 0.098 0.902 25 C -0.273 4.273 26 N -0.623 5.623 27 Si 0.803 3.197 28 H -0.217 1.217 29 H -0.224 1.224 30 H -0.189 1.189 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.183 0.817 39 H 0.194 0.806 40 H 0.215 0.785 41 H 0.212 0.788 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.046 0.954 46 H 0.202 0.798 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.145 7.652 -30.570 31.513 hybrid contribution 0.427 -1.920 1.992 2.799 sum 0.572 5.732 -28.578 29.153 Atomic orbital electron populations 1.21883 0.93268 1.01717 1.03507 1.22306 0.97171 1.00111 0.90813 0.85848 1.23081 1.02042 0.80556 0.98058 1.48454 1.61597 1.12717 1.11070 1.18483 0.77036 0.83222 0.86134 1.90774 1.57885 1.23882 1.74481 1.19773 1.04790 0.97195 0.93026 1.21025 0.94732 0.98550 0.94553 1.21103 1.00809 0.96882 0.94254 1.18665 0.95229 0.94040 0.94921 1.22217 1.01764 0.99684 0.94246 1.22722 0.93764 0.89301 1.00784 1.67554 1.11484 1.34291 1.08829 1.23797 0.93190 0.94304 0.90017 1.19214 1.02140 0.96903 0.95499 1.23197 0.94995 0.96314 0.93752 1.22149 0.99523 0.98266 0.80154 1.22507 1.00359 0.93307 0.95237 0.90360 1.20801 0.94553 0.95679 0.84999 1.42669 1.25167 1.65024 1.06302 1.19653 1.02923 1.27057 0.87599 0.90220 1.25610 0.98239 1.01436 1.01972 1.69828 1.19778 1.41816 1.30920 0.85133 0.77117 0.78048 0.79444 1.21710 1.22413 1.18949 0.94085 0.92068 0.89251 0.87649 0.87114 0.85551 0.82090 0.81714 0.80565 0.78533 0.78777 0.92067 0.93984 0.94658 0.95402 0.79807 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 7.92 71.98 0.57 -1.85 16 2 C -0.08 -1.47 3.46 -9.61 -0.03 -1.51 16 3 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 4 C 0.08 1.29 4.45 86.73 0.39 1.67 16 5 N -0.61 -16.31 3.32 -833.30 -2.77 -19.08 16 6 C 0.56 17.34 7.80 86.77 0.68 18.02 16 7 O -0.59 -24.04 16.63 -3.91 -0.07 -24.11 16 8 C -0.14 -3.36 5.87 -20.09 -0.12 -3.48 16 9 C -0.07 -1.50 9.49 22.30 0.21 -1.29 16 10 C -0.11 -1.83 9.77 22.24 0.22 -1.61 16 11 C -0.02 -0.37 5.75 -21.24 -0.12 -0.49 16 12 C -0.16 -1.85 9.87 22.38 0.22 -1.63 16 13 C 0.08 0.93 11.07 84.11 0.93 1.86 16 14 N -0.51 -7.80 10.30 -195.41 -2.01 -9.82 16 15 C 0.16 1.97 11.05 85.34 0.94 2.91 16 16 C -0.14 -2.07 5.74 -21.32 -0.12 -2.19 16 17 C -0.06 -1.00 8.37 22.81 0.19 -0.81 16 18 C 0.12 4.07 5.99 86.93 0.52 4.59 16 19 C -0.09 -2.75 2.93 -9.33 -0.03 -2.77 16 20 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 21 C 0.17 6.12 4.54 86.38 0.39 6.51 16 22 N -0.75 -37.80 5.55 -343.45 -1.91 -39.71 16 23 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 24 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 25 C -0.08 -4.70 5.50 84.86 0.47 -4.24 16 26 N -0.97 -61.08 13.06 21.65 0.28 -60.79 16 27 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 30 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 31 H 0.04 0.83 7.35 -2.38 -0.02 0.81 16 32 H 0.06 1.13 7.13 -2.39 -0.02 1.11 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 1.14 6.66 -2.39 -0.02 1.13 16 35 H 0.11 1.09 6.49 -2.39 -0.02 1.07 16 36 H 0.13 3.02 7.63 -2.91 -0.02 3.00 16 37 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.20 0.98 8.06 -2.92 -0.02 0.96 16 41 H 0.20 1.93 2.71 -9.98 -0.03 1.90 16 42 H 0.06 2.16 7.48 -2.39 -0.02 2.14 16 43 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 44 H 0.04 1.25 8.05 -2.38 -0.02 1.23 16 45 H 0.03 1.03 6.95 -2.39 -0.02 1.02 16 46 H 0.37 20.39 7.67 -92.71 -0.71 19.68 16 47 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -80.59 378.31 1.98 -78.61 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.28 Total: 25.04 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 6.14 Total: 1.15 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -6.41 Total: -129.40 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -80.59 1.98 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325582458.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.218 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds