Wall clock time and date at job start Tue Mar 31 2020 22:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.88694 * 2 1 4 4 C 1.55123 * 110.90641 * 124.09911 * 2 1 3 5 5 N 1.47428 * 104.72449 * 155.27016 * 4 2 1 6 6 C 1.34779 * 125.64969 * 155.81083 * 5 4 2 7 7 O 1.21558 * 119.99942 * 5.16118 * 6 5 4 8 8 C 1.47774 * 119.99667 * 185.15361 * 6 5 4 9 9 C 1.40643 * 119.70633 * 351.86208 * 8 6 5 10 10 C 1.35850 * 120.88359 * 179.97438 * 9 8 6 11 11 C 1.40398 * 119.84143 * 0.04709 * 10 9 8 12 12 C 1.40638 * 121.98314 * 180.24897 * 11 10 9 13 13 C 1.36221 * 118.72640 * 180.16898 * 12 11 10 14 14 N 1.32593 * 121.90535 * 359.50483 * 13 12 11 15 15 C 1.31233 * 122.73707 * 0.26046 * 14 13 12 16 16 C 1.40539 * 119.88710 * 359.97438 * 15 14 13 17 17 C 1.38569 * 119.69675 * 171.84471 * 8 6 5 18 18 C 1.47025 * 108.70234 * 335.55503 * 5 4 2 19 19 C 1.54325 * 107.26901 * 1.28412 * 18 5 4 20 20 H 1.09002 * 110.72191 * 263.83086 * 19 18 5 21 21 C 1.52999 * 110.71983 * 140.73485 * 19 18 5 22 22 N 1.46501 * 109.46973 * 66.45484 * 21 19 18 23 23 C 1.36940 * 119.99905 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99901 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00184 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99945 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00324 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47579 * 59.99580 * 27 25 23 29 29 H 1.48503 * 109.47491 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46812 * 299.99767 * 27 25 23 31 31 H 1.08994 * 109.47449 * 183.87954 * 1 2 3 32 32 H 1.09008 * 109.46434 * 303.87688 * 1 2 3 33 33 H 1.08997 * 109.47340 * 63.87248 * 1 2 3 34 34 H 1.09007 * 110.50180 * 36.42898 * 4 2 1 35 35 H 1.08995 * 110.34644 * 274.03492 * 4 2 1 36 36 H 1.08003 * 119.55598 * 0.02562 * 9 8 6 37 37 H 1.07996 * 120.07749 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.63642 * 359.93089 * 12 11 10 39 39 H 1.08001 * 119.04055 * 179.78813 * 13 12 11 40 40 H 1.08006 * 120.05326 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.34254 * 359.97438 * 17 8 6 42 42 H 1.08998 * 109.88078 * 120.69780 * 18 5 4 43 43 H 1.08992 * 109.87910 * 241.71265 * 18 5 4 44 44 H 1.09006 * 109.47016 * 186.44844 * 21 19 18 45 45 H 1.08997 * 109.47411 * 306.45242 * 21 19 18 46 46 H 0.96995 * 119.99841 * 359.97438 * 22 21 19 47 47 H 0.97002 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4271 -1.2435 0.7727 6 6 4.4477 -1.5623 1.5933 7 8 4.2728 -1.5969 2.7957 8 6 5.7792 -1.8700 1.0311 9 6 5.9357 -1.9971 -0.3608 10 6 7.1488 -2.2790 -0.9033 11 6 8.2652 -2.4477 -0.0688 12 6 9.5425 -2.7352 -0.5823 13 6 10.5787 -2.8892 0.2884 14 7 10.4172 -2.7663 1.5987 15 6 9.2569 -2.4947 2.1484 16 6 8.1217 -2.3213 1.3383 17 6 6.8626 -2.0302 1.8801 18 6 3.4674 -1.2739 -0.6967 19 6 2.0861 -0.8075 -1.2026 20 1 1.4466 -1.6626 -1.4217 21 6 2.2346 0.0850 -2.4364 22 7 2.7592 -0.7070 -3.5517 23 6 2.9769 -0.1167 -4.7680 24 1 2.7614 0.9327 -4.9052 25 6 3.4744 -0.8669 -5.8245 26 7 3.7365 -2.1459 -5.6575 27 14 3.7720 -0.0615 -7.4834 28 1 4.7570 1.0391 -7.3299 29 1 4.3009 -1.0706 -8.4359 30 1 2.4939 0.4871 -8.0036 31 1 -0.3634 -1.0252 0.0695 32 1 -0.3632 0.5729 0.8533 33 1 -0.3634 0.4525 -0.9226 34 1 1.4524 -1.6788 1.3981 35 1 2.1516 -0.1811 2.0859 36 1 5.0800 -1.8682 -1.0071 37 1 7.2542 -2.3734 -1.9740 38 1 9.6981 -2.8358 -1.6463 39 1 11.5611 -3.1136 -0.1002 40 1 9.1746 -2.4045 3.2216 41 1 6.7379 -1.9309 2.9483 42 1 4.2425 -0.5994 -1.0603 43 1 3.6676 -2.2885 -1.0410 44 1 1.2616 0.4946 -2.7078 45 1 2.9231 0.9004 -2.2144 46 1 2.9530 -1.6494 -3.4283 47 1 4.0845 -2.6702 -6.3957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325582459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:40 Heat of formation + Delta-G solvation = 52.139520 kcal Electronic energy + Delta-G solvation = -28917.705044 eV Core-core repulsion = 25066.198212 eV Total energy + Delta-G solvation = -3851.506832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.14918 -40.17796 -38.12104 -37.03804 -34.73260 -33.34670 -33.11779 -31.74706 -31.10263 -29.88639 -29.17445 -26.92494 -25.82230 -24.41253 -24.05963 -23.10245 -22.37734 -21.28308 -20.15150 -20.04998 -18.48912 -17.43045 -17.12012 -16.92023 -16.19482 -15.73018 -15.37205 -15.13757 -14.86963 -14.49131 -14.37669 -14.15575 -13.98793 -13.75976 -13.61626 -13.51636 -13.26279 -12.99620 -12.85063 -12.58589 -12.34900 -12.09699 -11.94241 -11.70994 -11.47351 -11.39312 -11.14622 -10.88819 -10.61062 -10.51999 -10.36163 -10.31923 -10.13121 -10.02098 -9.74812 -9.61420 -9.23722 -8.96782 -8.71551 -8.19943 -7.03899 -5.86327 -3.15665 0.07317 0.60064 1.65448 2.47194 2.88869 3.25374 3.37919 3.43358 3.43457 3.94564 4.19257 4.25168 4.41825 4.47241 4.52310 4.61372 4.63403 4.71281 4.83013 4.94327 4.95607 5.16674 5.23837 5.32460 5.43096 5.45251 5.48870 5.51106 5.54942 5.63416 5.68834 5.72151 5.78009 5.80806 5.83878 5.91012 5.96713 6.10031 6.12108 6.18562 6.24975 6.31554 6.32859 6.44719 6.60028 6.63106 6.71559 7.43575 7.61399 7.76170 8.06860 8.32092 9.43957 9.98658 10.33527 11.36085 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.003810 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.983964 B = 7348.052063 C =10583.037631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.087 0.913 4 C 0.112 3.888 5 N -0.611 5.611 6 C 0.574 3.426 7 O -0.545 6.545 8 C -0.129 4.129 9 C -0.110 4.110 10 C -0.111 4.111 11 C -0.008 4.008 12 C -0.155 4.155 13 C 0.078 3.922 14 N -0.494 5.494 15 C 0.155 3.845 16 C -0.126 4.126 17 C -0.023 4.023 18 C 0.095 3.905 19 C -0.103 4.103 20 H 0.089 0.911 21 C 0.163 3.837 22 N -0.733 5.733 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.010 4.010 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.174 0.826 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.145 0.855 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.027 0.973 45 H 0.022 0.978 46 H 0.383 0.617 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 0.097 14.156 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.106 0.894 4 C -0.010 4.010 5 N -0.343 5.343 6 C 0.364 3.636 7 O -0.424 6.424 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.128 4.128 11 C -0.013 4.013 12 C -0.175 4.175 13 C -0.065 4.065 14 N -0.202 5.202 15 C -0.017 4.017 16 C -0.128 4.128 17 C -0.044 4.044 18 C -0.027 4.027 19 C -0.122 4.122 20 H 0.107 0.893 21 C 0.035 3.965 22 N -0.377 5.377 23 C -0.373 4.373 24 H 0.088 0.912 25 C -0.206 4.206 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.190 0.810 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.182 0.818 41 H 0.163 0.837 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.044 0.956 45 H 0.040 0.960 46 H 0.217 0.783 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.854 0.032 15.098 15.859 hybrid contribution -0.419 0.143 -1.716 1.773 sum 4.435 0.175 13.382 14.098 Atomic orbital electron populations 1.21687 0.93551 1.02173 1.02268 1.22422 0.96389 0.99462 0.93590 0.89443 1.22389 0.82418 0.98356 0.97812 1.48380 1.12153 1.66308 1.07445 1.17894 0.83326 0.76861 0.85489 1.90753 1.83840 1.53467 1.14341 1.19872 0.93566 1.05644 0.94159 1.22748 1.00578 0.94776 0.94724 1.21074 0.91468 0.99897 1.00410 1.18398 0.94531 0.95735 0.92670 1.22011 0.92509 1.01290 1.01699 1.22227 0.99299 0.96478 0.88450 1.67456 1.26066 1.12717 1.13944 1.23256 0.86612 0.91884 0.99968 1.18968 0.95494 1.04431 0.93892 1.21367 0.89929 0.92811 1.00323 1.22718 0.99410 1.01907 0.78673 1.22596 0.94718 0.99561 0.95317 0.89297 1.20658 0.96980 0.92873 0.85969 1.42340 1.78037 1.09798 1.07552 1.19156 1.36158 0.94144 0.87878 0.91226 1.24706 1.01955 0.95765 0.98176 1.69632 1.50738 1.05911 1.31815 0.86296 0.77981 0.78088 0.83980 1.21250 1.21668 1.21256 0.92358 0.92555 0.91554 0.91181 0.90475 0.80953 0.83999 0.84070 0.82941 0.81804 0.83694 0.89362 0.90017 0.95566 0.95995 0.78339 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.31 37.16 0.35 -1.00 16 2 C -0.10 -1.12 3.11 -88.35 -0.27 -1.39 16 3 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 4 C 0.11 1.35 6.36 -2.41 -0.02 1.33 16 5 N -0.61 -8.37 3.33 -178.43 -0.59 -8.96 16 6 C 0.57 8.67 7.80 -12.36 -0.10 8.57 16 7 O -0.54 -9.41 16.63 5.31 0.09 -9.32 16 8 C -0.13 -1.79 5.87 -104.97 -0.62 -2.41 16 9 C -0.11 -1.50 8.48 -39.53 -0.34 -1.83 16 10 C -0.11 -1.44 9.77 -39.63 -0.39 -1.83 16 11 C -0.01 -0.10 5.75 -106.74 -0.61 -0.72 16 12 C -0.16 -1.70 9.87 -39.40 -0.39 -2.09 16 13 C 0.08 0.83 11.07 -17.95 -0.20 0.64 16 14 N -0.49 -5.90 10.30 -13.12 -0.14 -6.04 16 15 C 0.15 1.70 11.05 -16.94 -0.19 1.51 16 16 C -0.13 -1.54 5.74 -106.88 -0.61 -2.15 16 17 C -0.02 -0.29 9.37 -38.75 -0.36 -0.66 16 18 C 0.09 1.30 4.15 -3.06 -0.01 1.29 16 19 C -0.10 -1.41 2.47 -88.78 -0.22 -1.63 16 20 H 0.09 1.25 8.04 -51.93 -0.42 0.83 16 21 C 0.16 2.85 5.59 -4.04 -0.02 2.83 16 22 N -0.73 -16.56 5.45 -59.91 -0.33 -16.89 16 23 C -0.24 -6.29 9.99 -15.06 -0.15 -6.44 16 24 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -26.28 13.06 55.49 0.72 -25.56 16 27 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 31 H 0.06 0.54 8.07 -51.93 -0.42 0.13 16 32 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.80 7.99 -51.93 -0.41 0.39 16 35 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 36 H 0.17 2.38 2.67 -61.38 -0.16 2.22 16 37 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.15 1.62 7.64 -52.49 -0.40 1.22 16 42 H 0.09 1.29 6.27 -51.93 -0.33 0.97 16 43 H 0.08 1.13 6.78 -51.93 -0.35 0.78 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.39 8.06 -51.93 -0.42 -0.02 16 46 H 0.38 9.00 7.52 -40.82 -0.31 8.70 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 382.85 15.07 5.77 5.77 Total: -1.00 -31.29 382.85 -10.30 -41.59 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.56 Total: 9.45 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -4.25 Total: -6.35 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.33 Total: -57.44 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.29 -10.30 -41.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325582459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.733 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds