Wall clock time and date at job start Tue Mar 31 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.88694 * 2 1 4 4 C 1.55123 * 110.90641 * 124.09911 * 2 1 3 5 5 N 1.47428 * 104.72449 * 155.27016 * 4 2 1 6 6 C 1.34779 * 125.64969 * 155.81083 * 5 4 2 7 7 O 1.21558 * 119.99942 * 5.16118 * 6 5 4 8 8 C 1.47774 * 119.99667 * 185.15361 * 6 5 4 9 9 C 1.40643 * 119.70633 * 351.86208 * 8 6 5 10 10 C 1.35850 * 120.88359 * 179.97438 * 9 8 6 11 11 C 1.40398 * 119.84143 * 0.04709 * 10 9 8 12 12 C 1.40638 * 121.98314 * 180.24897 * 11 10 9 13 13 C 1.36221 * 118.72640 * 180.16898 * 12 11 10 14 14 N 1.32593 * 121.90535 * 359.50483 * 13 12 11 15 15 C 1.31233 * 122.73707 * 0.26046 * 14 13 12 16 16 C 1.40539 * 119.88710 * 359.97438 * 15 14 13 17 17 C 1.38569 * 119.69675 * 171.84471 * 8 6 5 18 18 C 1.47025 * 108.70234 * 335.55503 * 5 4 2 19 19 C 1.54325 * 107.26901 * 1.28412 * 18 5 4 20 20 H 1.09002 * 110.72191 * 263.83086 * 19 18 5 21 21 C 1.52999 * 110.71983 * 140.73485 * 19 18 5 22 22 N 1.46501 * 109.46973 * 66.45484 * 21 19 18 23 23 C 1.36940 * 119.99905 * 180.02562 * 22 21 19 24 24 H 1.08004 * 119.99901 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00184 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99945 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00324 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47579 * 59.99580 * 27 25 23 29 29 H 1.48503 * 109.47491 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.46812 * 299.99767 * 27 25 23 31 31 H 1.08994 * 109.47449 * 183.87954 * 1 2 3 32 32 H 1.09008 * 109.46434 * 303.87688 * 1 2 3 33 33 H 1.08997 * 109.47340 * 63.87248 * 1 2 3 34 34 H 1.09007 * 110.50180 * 36.42898 * 4 2 1 35 35 H 1.08995 * 110.34644 * 274.03492 * 4 2 1 36 36 H 1.08003 * 119.55598 * 0.02562 * 9 8 6 37 37 H 1.07996 * 120.07749 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.63642 * 359.93089 * 12 11 10 39 39 H 1.08001 * 119.04055 * 179.78813 * 13 12 11 40 40 H 1.08006 * 120.05326 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.34254 * 359.97438 * 17 8 6 42 42 H 1.08998 * 109.88078 * 120.69780 * 18 5 4 43 43 H 1.08992 * 109.87910 * 241.71265 * 18 5 4 44 44 H 1.09006 * 109.47016 * 186.44844 * 21 19 18 45 45 H 1.08997 * 109.47411 * 306.45242 * 21 19 18 46 46 H 0.96995 * 119.99841 * 359.97438 * 22 21 19 47 47 H 0.97002 * 120.00046 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4271 -1.2435 0.7727 6 6 4.4477 -1.5623 1.5933 7 8 4.2728 -1.5969 2.7957 8 6 5.7792 -1.8700 1.0311 9 6 5.9357 -1.9971 -0.3608 10 6 7.1488 -2.2790 -0.9033 11 6 8.2652 -2.4477 -0.0688 12 6 9.5425 -2.7352 -0.5823 13 6 10.5787 -2.8892 0.2884 14 7 10.4172 -2.7663 1.5987 15 6 9.2569 -2.4947 2.1484 16 6 8.1217 -2.3213 1.3383 17 6 6.8626 -2.0302 1.8801 18 6 3.4674 -1.2739 -0.6967 19 6 2.0861 -0.8075 -1.2026 20 1 1.4466 -1.6626 -1.4217 21 6 2.2346 0.0850 -2.4364 22 7 2.7592 -0.7070 -3.5517 23 6 2.9769 -0.1167 -4.7680 24 1 2.7614 0.9327 -4.9052 25 6 3.4744 -0.8669 -5.8245 26 7 3.7365 -2.1459 -5.6575 27 14 3.7720 -0.0615 -7.4834 28 1 4.7570 1.0391 -7.3299 29 1 4.3009 -1.0706 -8.4359 30 1 2.4939 0.4871 -8.0036 31 1 -0.3634 -1.0252 0.0695 32 1 -0.3632 0.5729 0.8533 33 1 -0.3634 0.4525 -0.9226 34 1 1.4524 -1.6788 1.3981 35 1 2.1516 -0.1811 2.0859 36 1 5.0800 -1.8682 -1.0071 37 1 7.2542 -2.3734 -1.9740 38 1 9.6981 -2.8358 -1.6463 39 1 11.5611 -3.1136 -0.1002 40 1 9.1746 -2.4045 3.2216 41 1 6.7379 -1.9309 2.9483 42 1 4.2425 -0.5994 -1.0603 43 1 3.6676 -2.2885 -1.0410 44 1 1.2616 0.4946 -2.7078 45 1 2.9231 0.9004 -2.2144 46 1 2.9530 -1.6494 -3.4283 47 1 4.0845 -2.6702 -6.3957 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325582459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:38 Heat of formation + Delta-G solvation = 34.579113 kcal Electronic energy + Delta-G solvation = -28918.466521 eV Core-core repulsion = 25066.198212 eV Total energy + Delta-G solvation = -3852.268309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.14329 -41.21172 -39.26192 -38.05027 -36.40353 -34.49744 -34.04008 -33.31175 -32.18090 -30.86337 -30.58199 -27.86170 -27.28660 -25.48515 -25.21625 -24.51530 -23.31023 -22.53209 -21.25527 -21.14162 -19.54110 -19.01331 -18.32783 -17.93605 -17.28996 -16.80876 -16.61966 -16.33971 -16.12774 -15.69308 -15.41121 -15.29451 -15.20288 -14.97365 -14.88804 -14.61726 -14.48836 -14.16095 -13.98753 -13.57224 -13.44776 -13.27398 -13.04480 -12.95921 -12.71544 -12.68637 -12.49251 -12.34614 -12.17140 -11.88693 -11.67433 -11.52173 -11.29448 -11.26937 -11.19552 -10.87427 -10.53247 -10.23082 -9.83777 -9.13823 -8.94478 -7.90672 -5.18252 -0.86343 -0.37769 0.72007 1.42201 1.51587 1.52195 1.58239 1.80597 2.22430 2.59143 3.00513 3.17062 3.38843 3.42360 3.46412 3.54682 3.56573 3.67824 3.74331 3.82137 3.97458 4.01234 4.13631 4.23099 4.27519 4.37866 4.47998 4.51952 4.61205 4.63481 4.66196 4.74740 4.74991 4.79593 4.82462 4.85787 4.90960 5.03334 5.09087 5.15414 5.21517 5.25228 5.32832 5.35598 5.51132 5.56049 5.57183 5.66583 6.29550 6.31425 6.90158 6.92009 7.39564 8.13462 8.37587 9.31845 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.003810 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.983964 B = 7348.052063 C =10583.037631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.090 0.910 4 C 0.110 3.890 5 N -0.609 5.609 6 C 0.572 3.428 7 O -0.571 6.571 8 C -0.149 4.149 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.020 4.020 12 C -0.163 4.163 13 C 0.079 3.921 14 N -0.510 5.510 15 C 0.158 3.842 16 C -0.137 4.137 17 C -0.013 4.013 18 C 0.103 3.897 19 C -0.095 4.095 20 H 0.088 0.912 21 C 0.165 3.835 22 N -0.742 5.742 23 C -0.243 4.243 24 H 0.073 0.927 25 C -0.066 4.066 26 N -0.963 5.963 27 Si 0.963 3.037 28 H -0.280 1.280 29 H -0.297 1.297 30 H -0.281 1.281 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.160 0.840 39 H 0.181 0.819 40 H 0.194 0.806 41 H 0.158 0.842 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.030 0.970 45 H 0.022 0.978 46 H 0.376 0.624 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 0.745 14.900 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.108 0.892 4 C -0.011 4.011 5 N -0.340 5.340 6 C 0.363 3.637 7 O -0.453 6.453 8 C -0.152 4.152 9 C -0.135 4.135 10 C -0.137 4.137 11 C -0.025 4.025 12 C -0.183 4.183 13 C -0.063 4.063 14 N -0.218 5.218 15 C -0.013 4.013 16 C -0.139 4.139 17 C -0.034 4.034 18 C -0.019 4.019 19 C -0.114 4.114 20 H 0.107 0.893 21 C 0.039 3.961 22 N -0.385 5.385 23 C -0.375 4.375 24 H 0.091 0.909 25 C -0.259 4.259 26 N -0.614 5.614 27 Si 0.793 3.207 28 H -0.207 1.207 29 H -0.224 1.224 30 H -0.208 1.208 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.183 0.817 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.198 0.802 40 H 0.211 0.789 41 H 0.176 0.824 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.209 0.791 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.111 0.719 15.853 16.672 hybrid contribution -0.456 -0.033 -1.894 1.948 sum 4.655 0.686 13.959 14.731 Atomic orbital electron populations 1.21678 0.91887 1.02846 1.02915 1.22372 0.97618 0.98924 0.91638 0.89203 1.22533 0.81623 0.98861 0.98114 1.48414 1.12665 1.65733 1.07215 1.18080 0.83873 0.76497 0.85238 1.90727 1.84336 1.54982 1.15227 1.19857 0.93542 1.07431 0.94366 1.22669 1.00651 0.95451 0.94717 1.21149 0.91636 1.00256 1.00695 1.18630 0.95106 0.95719 0.93043 1.22239 0.91838 1.01323 1.02869 1.22713 1.00413 0.95064 0.88103 1.67552 1.26369 1.13278 1.14626 1.23719 0.85809 0.90567 1.01235 1.19132 0.95874 1.04902 0.94035 1.21535 0.89671 0.91404 1.00801 1.22568 0.99088 1.01452 0.78805 1.22454 0.94919 0.99300 0.94717 0.89319 1.20747 0.96510 0.92975 0.85890 1.42500 1.78123 1.09869 1.07998 1.19524 1.34600 0.94341 0.89053 0.90898 1.25385 1.02910 0.96343 1.01241 1.69769 1.52295 1.07034 1.32260 0.85370 0.77884 0.77095 0.80345 1.20653 1.22370 1.20763 0.91909 0.90669 0.91947 0.90296 0.90074 0.81667 0.83801 0.82268 0.80218 0.78939 0.82439 0.90399 0.90426 0.95194 0.95977 0.79144 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.31 71.98 0.67 -1.65 16 2 C -0.09 -1.81 3.11 -9.33 -0.03 -1.84 16 3 H 0.09 1.89 8.05 -2.39 -0.02 1.87 16 4 C 0.11 2.50 6.36 86.93 0.55 3.05 16 5 N -0.61 -16.54 3.33 -836.70 -2.78 -19.32 16 6 C 0.57 17.29 7.80 86.77 0.68 17.97 16 7 O -0.57 -19.60 16.63 -3.90 -0.06 -19.67 16 8 C -0.15 -4.17 5.87 -20.09 -0.12 -4.29 16 9 C -0.12 -3.26 8.48 22.30 0.19 -3.07 16 10 C -0.12 -3.18 9.77 22.24 0.22 -2.96 16 11 C -0.02 -0.49 5.75 -21.24 -0.12 -0.61 16 12 C -0.16 -3.37 9.87 22.39 0.22 -3.15 16 13 C 0.08 1.54 11.07 84.11 0.93 2.47 16 14 N -0.51 -11.22 10.30 -195.42 -2.01 -13.23 16 15 C 0.16 3.20 11.05 85.34 0.94 4.14 16 16 C -0.14 -3.25 5.74 -21.33 -0.12 -3.37 16 17 C -0.01 -0.33 9.37 22.81 0.21 -0.11 16 18 C 0.10 2.85 4.15 86.73 0.36 3.21 16 19 C -0.09 -2.54 2.47 -9.60 -0.02 -2.57 16 20 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 21 C 0.17 5.69 5.59 86.38 0.48 6.18 16 22 N -0.74 -33.64 5.45 -343.45 -1.87 -35.51 16 23 C -0.24 -12.60 9.99 84.03 0.84 -11.76 16 24 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 25 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 26 N -0.96 -55.01 13.06 21.65 0.28 -54.73 16 27 Si 0.96 43.86 29.55 68.60 2.03 45.89 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 30 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 31 H 0.06 1.03 8.07 -2.39 -0.02 1.01 16 32 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.68 7.99 -2.38 -0.02 1.66 16 35 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 36 H 0.17 4.78 2.67 -11.26 -0.03 4.75 16 37 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.19 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.16 3.37 7.64 -2.91 -0.02 3.35 16 42 H 0.08 2.34 6.27 -2.39 -0.01 2.33 16 43 H 0.08 2.23 6.78 -2.39 -0.02 2.21 16 44 H 0.03 1.03 8.14 -2.38 -0.02 1.02 16 45 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 46 H 0.38 17.97 7.52 -92.71 -0.70 17.28 16 47 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -66.12 382.85 2.21 -63.91 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.28 Total: 34.11 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 6.35 Total: -1.45 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -6.38 Total: -122.79 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.06 Total: -19.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -66.12 2.21 -63.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325582459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.490 kcal (2) G-P(sol) polarization free energy of solvation -66.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds