Wall clock time and date at job start Tue Mar 31 2020 22:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.64126 * 2 1 4 4 C 1.54330 * 110.72134 * 123.14217 * 2 1 3 5 5 N 1.47020 * 107.27064 * 96.17092 * 4 2 1 6 6 C 1.34779 * 125.64588 * 178.91092 * 5 4 2 7 7 O 1.21558 * 119.99723 * 174.62848 * 6 5 4 8 8 C 1.47777 * 120.00069 * 354.62131 * 6 5 4 9 9 C 1.40647 * 119.69990 * 187.85233 * 8 6 5 10 10 C 1.35853 * 120.87626 * 179.75474 * 9 8 6 11 11 C 1.40392 * 119.84405 * 0.52117 * 10 9 8 12 12 C 1.40635 * 121.98002 * 179.75884 * 11 10 9 13 13 C 1.36218 * 118.73239 * 179.97438 * 12 11 10 14 14 N 1.32597 * 121.90048 * 359.97438 * 13 12 11 15 15 C 1.31232 * 122.74138 * 0.04127 * 14 13 12 16 16 C 1.40549 * 119.88599 * 359.95553 * 15 14 13 17 17 C 1.38569 * 119.69869 * 8.13146 * 8 6 5 18 18 C 1.47425 * 108.70466 * 358.93999 * 5 4 2 19 19 C 1.54910 * 104.83099 * 24.13035 * 18 5 4 20 20 H 1.08998 * 111.00252 * 81.06114 * 19 18 5 21 21 C 1.52996 * 111.00366 * 204.91665 * 19 18 5 22 22 N 1.46503 * 109.47212 * 287.19551 * 21 19 18 23 23 C 1.36930 * 120.00274 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00296 * 0.02562 * 23 22 21 25 25 C 1.38813 * 119.99911 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99785 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 120.00148 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47425 * 89.99857 * 27 25 23 29 29 H 1.48498 * 109.47185 * 209.99859 * 27 25 23 30 30 H 1.48498 * 109.47406 * 329.99737 * 27 25 23 31 31 H 1.09004 * 109.47252 * 298.31329 * 1 2 3 32 32 H 1.08998 * 109.47352 * 58.30988 * 1 2 3 33 33 H 1.08996 * 109.47059 * 178.31157 * 1 2 3 34 34 H 1.08996 * 109.87908 * 215.59032 * 4 2 1 35 35 H 1.09005 * 109.87742 * 336.59804 * 4 2 1 36 36 H 1.07999 * 119.55943 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.07552 * 180.26120 * 10 9 8 38 38 H 1.08006 * 120.63330 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.05073 * 180.02562 * 13 12 11 40 40 H 1.08006 * 120.06131 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.34579 * 359.95930 * 17 8 6 42 42 H 1.08998 * 110.36527 * 142.96861 * 18 5 4 43 43 H 1.09000 * 110.36247 * 265.29207 * 18 5 4 44 44 H 1.08997 * 109.47139 * 47.19618 * 21 19 18 45 45 H 1.08997 * 109.47068 * 167.19524 * 21 19 18 46 46 H 0.97003 * 119.99436 * 359.97438 * 22 21 19 47 47 H 0.97006 * 120.00166 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 2.3716 -2.1519 0.7427 6 6 2.8862 -3.1449 1.4948 7 8 2.9995 -4.2626 1.0306 8 6 3.3128 -2.8747 2.8836 9 6 3.9989 -3.8666 3.6073 10 6 4.4064 -3.6421 4.8837 11 6 4.1325 -2.4097 5.4979 12 6 4.5289 -2.1312 6.8182 13 6 4.2291 -0.9130 7.3488 14 7 3.5776 0.0116 6.6567 15 6 3.1769 -0.1775 5.4214 16 6 3.4363 -1.4012 4.7806 17 6 3.0280 -1.6487 3.4631 18 6 2.0126 -2.2521 -0.6837 19 6 2.0790 -0.7975 -1.2124 20 1 3.1061 -0.5098 -1.4365 21 6 1.1815 -0.6182 -2.4385 22 7 1.7913 -1.2848 -3.5918 23 6 1.1637 -1.2586 -4.8085 24 1 0.2194 -0.7462 -4.9182 25 6 1.7419 -1.8898 -5.9013 26 7 1.1384 -1.8651 -7.0708 27 14 3.3756 -2.7755 -5.7120 28 1 3.1306 -4.1916 -5.3381 29 1 4.1183 -2.7242 -6.9968 30 1 4.1767 -2.1148 -4.6504 31 1 -0.3634 0.4874 0.9047 32 1 -0.3634 0.5398 -0.8744 33 1 -0.3633 -1.0272 -0.0303 34 1 2.9868 -0.3180 1.5781 35 1 1.3272 -0.8198 2.0002 36 1 4.2084 -4.8177 3.1405 37 1 4.9360 -4.4114 5.4260 38 1 5.0616 -2.8689 7.4001 39 1 4.5314 -0.6935 8.3621 40 1 2.6488 0.6059 4.8980 41 1 2.4975 -0.8914 2.9050 42 1 2.7293 -2.8808 -1.2120 43 1 1.0039 -2.6502 -0.7939 44 1 0.2037 -1.0571 -2.2403 45 1 1.0662 0.4444 -2.6521 46 1 2.6397 -1.7447 -3.4934 47 1 1.5422 -2.3065 -7.8344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325582460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:43 Heat of formation + Delta-G solvation = 60.064381 kcal Electronic energy + Delta-G solvation = -28695.424067 eV Core-core repulsion = 24844.260883 eV Total energy + Delta-G solvation = -3851.163184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.45905 -40.37263 -38.41919 -37.20904 -35.08224 -33.69550 -32.84804 -31.65117 -31.44143 -30.56442 -29.15939 -27.15335 -26.02993 -24.96398 -24.15745 -23.17896 -22.62178 -21.60457 -20.40378 -19.54289 -18.64566 -17.76263 -17.29727 -17.04001 -16.63095 -16.13069 -15.53939 -15.38860 -15.09950 -14.73793 -14.57408 -14.34894 -14.09173 -14.04415 -13.84471 -13.66453 -13.25885 -12.94332 -12.76606 -12.64370 -12.56125 -12.31041 -12.24685 -12.05644 -11.82864 -11.57876 -11.23361 -10.92976 -10.70021 -10.62826 -10.56830 -10.35501 -10.15276 -10.10675 -9.87370 -9.60428 -9.53998 -8.91431 -8.79681 -8.55470 -7.25907 -5.78238 -3.14311 -0.22592 0.31405 1.35546 2.21198 2.73729 3.05303 3.37904 3.41539 3.46458 3.65261 3.92898 3.96964 4.12974 4.24133 4.26461 4.39209 4.51154 4.58715 4.62431 4.66065 4.69077 4.83531 5.01265 5.10004 5.11794 5.19110 5.25556 5.36504 5.37007 5.41741 5.46090 5.52815 5.58054 5.64446 5.68014 5.81921 5.83402 5.92426 5.97238 6.01539 6.09990 6.13421 6.17004 6.26493 6.32027 6.54931 6.66356 7.31569 7.50350 7.95722 7.96692 8.40415 9.18926 9.91512 10.10233 11.39951 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.002482 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.335059 B =11280.603840 C =12231.171024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.094 0.906 4 C 0.089 3.911 5 N -0.609 5.609 6 C 0.567 3.433 7 O -0.532 6.532 8 C -0.122 4.122 9 C -0.048 4.048 10 C -0.121 4.121 11 C -0.010 4.010 12 C -0.160 4.160 13 C 0.082 3.918 14 N -0.491 5.491 15 C 0.156 3.844 16 C -0.123 4.123 17 C -0.085 4.085 18 C 0.114 3.886 19 C -0.107 4.107 20 H 0.086 0.914 21 C 0.170 3.830 22 N -0.757 5.757 23 C -0.245 4.245 24 H 0.091 0.909 25 C 0.005 3.995 26 N -0.933 5.933 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.361 0.639 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 3.262 30.598 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.112 0.888 4 C -0.033 4.033 5 N -0.342 5.342 6 C 0.357 3.643 7 O -0.409 6.409 8 C -0.125 4.125 9 C -0.068 4.068 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.179 4.179 13 C -0.061 4.061 14 N -0.199 5.199 15 C -0.016 4.016 16 C -0.125 4.125 17 C -0.104 4.104 18 C -0.007 4.007 19 C -0.127 4.127 20 H 0.104 0.896 21 C 0.042 3.958 22 N -0.403 5.403 23 C -0.375 4.375 24 H 0.108 0.892 25 C -0.190 4.190 26 N -0.581 5.581 27 Si 0.713 3.287 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.204 1.204 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.184 0.816 41 H 0.190 0.810 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.193 0.807 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.889 3.384 30.748 31.317 hybrid contribution 1.477 -1.568 -0.349 2.182 sum 6.367 1.815 30.399 31.112 Atomic orbital electron populations 1.21876 0.93651 1.02659 1.02291 1.22265 0.96986 0.99283 0.93149 0.88769 1.22703 0.99929 0.82925 0.97750 1.48402 1.62410 1.11195 1.12212 1.17886 0.77705 0.83798 0.84951 1.90813 1.55528 1.21450 1.73153 1.19962 1.02647 0.95354 0.94554 1.21022 0.93415 0.98831 0.93490 1.20893 1.01549 0.96214 0.95273 1.18348 0.95200 0.93982 0.93949 1.21947 1.02010 0.99110 0.94880 1.22261 0.94555 0.89425 0.99817 1.67476 1.10697 1.33597 1.08143 1.23310 0.93765 0.94176 0.90314 1.19031 1.01781 0.96149 0.95525 1.23064 0.96203 0.97364 0.93774 1.22417 1.01699 0.97911 0.78675 1.22695 1.01303 0.93443 0.95210 0.89573 1.20619 0.94252 0.96420 0.84479 1.42743 1.24770 1.65692 1.07066 1.19022 1.04345 1.29313 0.84821 0.89165 1.24671 0.98332 1.00576 0.95466 1.69700 1.39647 1.48613 1.00114 0.86573 0.84969 0.80289 0.76842 1.20942 1.21708 1.20391 0.92631 0.91056 0.92184 0.90346 0.90178 0.84146 0.84488 0.84287 0.82864 0.81625 0.80987 0.90135 0.90428 0.94752 0.94910 0.80685 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.91 37.16 0.29 -1.06 16 2 C -0.10 -0.91 3.47 -88.78 -0.31 -1.22 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.09 0.76 4.45 -3.06 -0.01 0.74 16 5 N -0.61 -7.57 3.33 -177.70 -0.59 -8.16 16 6 C 0.57 7.91 7.80 -12.36 -0.10 7.82 16 7 O -0.53 -9.45 16.63 5.31 0.09 -9.36 16 8 C -0.12 -1.34 5.87 -104.97 -0.62 -1.96 16 9 C -0.05 -0.48 9.49 -39.53 -0.38 -0.86 16 10 C -0.12 -1.00 9.77 -39.63 -0.39 -1.38 16 11 C -0.01 -0.08 5.75 -106.74 -0.61 -0.70 16 12 C -0.16 -1.11 9.87 -39.40 -0.39 -1.50 16 13 C 0.08 0.61 11.07 -17.95 -0.20 0.41 16 14 N -0.49 -4.38 10.30 -13.11 -0.14 -4.52 16 15 C 0.16 1.20 11.05 -16.94 -0.19 1.01 16 16 C -0.12 -1.05 5.74 -106.87 -0.61 -1.67 16 17 C -0.08 -0.72 8.37 -38.75 -0.32 -1.05 16 18 C 0.11 1.67 5.99 -2.53 -0.02 1.65 16 19 C -0.11 -1.44 2.91 -88.47 -0.26 -1.70 16 20 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 21 C 0.17 2.96 4.54 -4.04 -0.02 2.94 16 22 N -0.76 -17.36 5.35 -59.91 -0.32 -17.68 16 23 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 24 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 25 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 26 N -0.93 -29.23 13.97 55.49 0.78 -28.45 16 27 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 28 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.72 7.12 -51.93 -0.37 0.35 16 33 H 0.06 0.62 7.34 -51.93 -0.38 0.24 16 34 H 0.08 0.54 6.66 -51.93 -0.35 0.19 16 35 H 0.08 0.53 6.50 -51.93 -0.34 0.19 16 36 H 0.14 1.42 7.63 -52.49 -0.40 1.02 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.18 16 39 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.17 1.10 2.71 -60.28 -0.16 0.94 16 42 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 43 H 0.08 1.18 7.48 -51.93 -0.39 0.79 16 44 H 0.03 0.61 6.94 -51.93 -0.36 0.25 16 45 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 46 H 0.36 8.21 5.53 -40.82 -0.23 7.98 16 47 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -35.49 375.12 -9.98 -45.47 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.36 Total: 4.93 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -4.37 Total: -5.44 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.27 Total: -58.81 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.49 -9.98 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325582460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.539 kcal (2) G-P(sol) polarization free energy of solvation -35.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds