Wall clock time and date at job start Tue Mar 31 2020 22:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.64126 * 2 1 4 4 C 1.54330 * 110.72134 * 123.14217 * 2 1 3 5 5 N 1.47020 * 107.27064 * 96.17092 * 4 2 1 6 6 C 1.34779 * 125.64588 * 178.91092 * 5 4 2 7 7 O 1.21558 * 119.99723 * 174.62848 * 6 5 4 8 8 C 1.47777 * 120.00069 * 354.62131 * 6 5 4 9 9 C 1.40647 * 119.69990 * 187.85233 * 8 6 5 10 10 C 1.35853 * 120.87626 * 179.75474 * 9 8 6 11 11 C 1.40392 * 119.84405 * 0.52117 * 10 9 8 12 12 C 1.40635 * 121.98002 * 179.75884 * 11 10 9 13 13 C 1.36218 * 118.73239 * 179.97438 * 12 11 10 14 14 N 1.32597 * 121.90048 * 359.97438 * 13 12 11 15 15 C 1.31232 * 122.74138 * 0.04127 * 14 13 12 16 16 C 1.40549 * 119.88599 * 359.95553 * 15 14 13 17 17 C 1.38569 * 119.69869 * 8.13146 * 8 6 5 18 18 C 1.47425 * 108.70466 * 358.93999 * 5 4 2 19 19 C 1.54910 * 104.83099 * 24.13035 * 18 5 4 20 20 H 1.08998 * 111.00252 * 81.06114 * 19 18 5 21 21 C 1.52996 * 111.00366 * 204.91665 * 19 18 5 22 22 N 1.46503 * 109.47212 * 287.19551 * 21 19 18 23 23 C 1.36930 * 120.00274 * 179.97438 * 22 21 19 24 24 H 1.08001 * 120.00296 * 0.02562 * 23 22 21 25 25 C 1.38813 * 119.99911 * 179.97438 * 23 22 21 26 26 N 1.31620 * 119.99785 * 179.97438 * 25 23 22 27 27 Si 1.86794 * 120.00148 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47425 * 89.99857 * 27 25 23 29 29 H 1.48498 * 109.47185 * 209.99859 * 27 25 23 30 30 H 1.48498 * 109.47406 * 329.99737 * 27 25 23 31 31 H 1.09004 * 109.47252 * 298.31329 * 1 2 3 32 32 H 1.08998 * 109.47352 * 58.30988 * 1 2 3 33 33 H 1.08996 * 109.47059 * 178.31157 * 1 2 3 34 34 H 1.08996 * 109.87908 * 215.59032 * 4 2 1 35 35 H 1.09005 * 109.87742 * 336.59804 * 4 2 1 36 36 H 1.07999 * 119.55943 * 0.02562 * 9 8 6 37 37 H 1.08001 * 120.07552 * 180.26120 * 10 9 8 38 38 H 1.08006 * 120.63330 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.05073 * 180.02562 * 13 12 11 40 40 H 1.08006 * 120.06131 * 179.97438 * 15 14 13 41 41 H 1.07997 * 120.34579 * 359.95930 * 17 8 6 42 42 H 1.08998 * 110.36527 * 142.96861 * 18 5 4 43 43 H 1.09000 * 110.36247 * 265.29207 * 18 5 4 44 44 H 1.08997 * 109.47139 * 47.19618 * 21 19 18 45 45 H 1.08997 * 109.47068 * 167.19524 * 21 19 18 46 46 H 0.97003 * 119.99436 * 359.97438 * 22 21 19 47 47 H 0.97006 * 120.00166 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7892 1.2086 5 7 2.3716 -2.1519 0.7427 6 6 2.8862 -3.1449 1.4948 7 8 2.9995 -4.2626 1.0306 8 6 3.3128 -2.8747 2.8836 9 6 3.9989 -3.8666 3.6073 10 6 4.4064 -3.6421 4.8837 11 6 4.1325 -2.4097 5.4979 12 6 4.5289 -2.1312 6.8182 13 6 4.2291 -0.9130 7.3488 14 7 3.5776 0.0116 6.6567 15 6 3.1769 -0.1775 5.4214 16 6 3.4363 -1.4012 4.7806 17 6 3.0280 -1.6487 3.4631 18 6 2.0126 -2.2521 -0.6837 19 6 2.0790 -0.7975 -1.2124 20 1 3.1061 -0.5098 -1.4365 21 6 1.1815 -0.6182 -2.4385 22 7 1.7913 -1.2848 -3.5918 23 6 1.1637 -1.2586 -4.8085 24 1 0.2194 -0.7462 -4.9182 25 6 1.7419 -1.8898 -5.9013 26 7 1.1384 -1.8651 -7.0708 27 14 3.3756 -2.7755 -5.7120 28 1 3.1306 -4.1916 -5.3381 29 1 4.1183 -2.7242 -6.9968 30 1 4.1767 -2.1148 -4.6504 31 1 -0.3634 0.4874 0.9047 32 1 -0.3634 0.5398 -0.8744 33 1 -0.3633 -1.0272 -0.0303 34 1 2.9868 -0.3180 1.5781 35 1 1.3272 -0.8198 2.0002 36 1 4.2084 -4.8177 3.1405 37 1 4.9360 -4.4114 5.4260 38 1 5.0616 -2.8689 7.4001 39 1 4.5314 -0.6935 8.3621 40 1 2.6488 0.6059 4.8980 41 1 2.4975 -0.8914 2.9050 42 1 2.7293 -2.8808 -1.2120 43 1 1.0039 -2.6502 -0.7939 44 1 0.2037 -1.0571 -2.2403 45 1 1.0662 0.4444 -2.6521 46 1 2.6397 -1.7447 -3.4934 47 1 1.5422 -2.3065 -7.8344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325582460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:42 Heat of formation + Delta-G solvation = 36.667647 kcal Electronic energy + Delta-G solvation = -28696.438626 eV Core-core repulsion = 24844.260883 eV Total energy + Delta-G solvation = -3852.177743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.17552 -41.20441 -39.41444 -37.96479 -36.70022 -34.71578 -33.84699 -33.14317 -32.29686 -31.45149 -30.26878 -27.97355 -27.35424 -25.79433 -24.98418 -24.26504 -23.62951 -22.81712 -21.26691 -20.75761 -19.62452 -19.15682 -18.27860 -17.77550 -17.46394 -17.04871 -16.68980 -16.39362 -16.00270 -15.95679 -15.68073 -15.23007 -15.02463 -14.93188 -14.74916 -14.61892 -14.45201 -14.25332 -14.10959 -13.80446 -13.53610 -13.16642 -13.09593 -13.04534 -12.86901 -12.85027 -12.64698 -12.33645 -12.13016 -11.84404 -11.62728 -11.56750 -11.37758 -11.23594 -11.08187 -10.96282 -10.48966 -10.23883 -9.78650 -9.29311 -9.14069 -8.04104 -5.36369 -0.82900 -0.34386 0.76387 1.34650 1.38201 1.43610 1.43881 1.77480 2.25823 2.45698 3.04541 3.17044 3.28095 3.37494 3.40385 3.52612 3.66615 3.67565 3.76760 3.82887 3.94302 4.00181 4.06857 4.15296 4.25586 4.30326 4.40719 4.49583 4.60746 4.64411 4.65024 4.75136 4.77469 4.81199 4.82066 4.86855 4.91891 5.02269 5.06306 5.17622 5.23269 5.27129 5.31988 5.33593 5.53997 5.58386 5.70972 5.76064 6.20268 6.36074 6.94277 6.97572 7.07106 7.84403 8.00549 9.17332 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.002482 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.335059 B =11280.603840 C =12231.171024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.125 0.875 4 C 0.083 3.917 5 N -0.607 5.607 6 C 0.561 3.439 7 O -0.587 6.587 8 C -0.145 4.145 9 C -0.068 4.068 10 C -0.114 4.114 11 C -0.023 4.023 12 C -0.160 4.160 13 C 0.076 3.924 14 N -0.514 5.514 15 C 0.158 3.842 16 C -0.136 4.136 17 C -0.063 4.063 18 C 0.115 3.885 19 C -0.099 4.099 20 H 0.087 0.913 21 C 0.167 3.833 22 N -0.762 5.762 23 C -0.228 4.228 24 H 0.062 0.938 25 C -0.063 4.063 26 N -0.982 5.982 27 Si 0.948 3.052 28 H -0.286 1.286 29 H -0.294 1.294 30 H -0.253 1.253 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.177 0.823 40 H 0.198 0.802 41 H 0.197 0.803 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.040 0.960 46 H 0.362 0.638 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 5.333 34.542 35.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.143 0.857 4 C -0.038 4.038 5 N -0.338 5.338 6 C 0.353 3.647 7 O -0.469 6.469 8 C -0.148 4.148 9 C -0.088 4.088 10 C -0.131 4.131 11 C -0.029 4.029 12 C -0.180 4.180 13 C -0.066 4.066 14 N -0.222 5.222 15 C -0.013 4.013 16 C -0.138 4.138 17 C -0.082 4.082 18 C -0.008 4.008 19 C -0.119 4.119 20 H 0.106 0.894 21 C 0.042 3.958 22 N -0.408 5.408 23 C -0.359 4.359 24 H 0.080 0.920 25 C -0.254 4.254 26 N -0.633 5.633 27 Si 0.776 3.224 28 H -0.212 1.212 29 H -0.220 1.220 30 H -0.178 1.178 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.145 0.855 37 H 0.178 0.822 38 H 0.182 0.818 39 H 0.194 0.806 40 H 0.215 0.785 41 H 0.213 0.787 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.195 0.805 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.040 5.513 34.765 35.714 hybrid contribution 1.018 -2.129 -1.432 2.760 sum 7.058 3.384 33.333 34.240 Atomic orbital electron populations 1.21901 0.93527 1.01754 1.03437 1.22301 0.96988 1.00225 0.90814 0.85670 1.23077 1.02135 0.80522 0.98061 1.48428 1.61667 1.12654 1.11080 1.18434 0.76997 0.83221 0.86052 1.90771 1.57925 1.23683 1.74478 1.19773 1.04903 0.97020 0.93103 1.21026 0.94713 0.98568 0.94488 1.21102 1.00779 0.96817 0.94433 1.18668 0.95247 0.94085 0.94877 1.22216 1.01772 0.99652 0.94322 1.22717 0.93812 0.89296 1.00770 1.67547 1.11474 1.34379 1.08812 1.23804 0.93132 0.94369 0.90029 1.19219 1.02182 0.96817 0.95568 1.23210 0.94850 0.96465 0.93717 1.22211 1.00031 0.98219 0.80316 1.22539 1.00689 0.93568 0.95083 0.89439 1.20798 0.94782 0.95941 0.84319 1.42831 1.24794 1.66139 1.07000 1.19048 1.03129 1.27141 0.86604 0.91958 1.25436 1.02267 1.02438 0.95301 1.69866 1.41692 1.50641 1.01080 0.85517 0.80948 0.78818 0.77162 1.21247 1.22043 1.17779 0.89390 0.92227 0.93995 0.87471 0.87241 0.85459 0.82178 0.81765 0.80640 0.78534 0.78721 0.93207 0.91797 0.94965 0.94171 0.80496 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 7.91 71.98 0.57 -1.72 16 2 C -0.08 -1.27 3.47 -9.60 -0.03 -1.30 16 3 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 4 C 0.08 1.08 4.45 86.73 0.39 1.47 16 5 N -0.61 -14.44 3.33 -834.38 -2.78 -17.21 16 6 C 0.56 15.78 7.80 86.77 0.68 16.45 16 7 O -0.59 -22.06 16.63 -3.90 -0.06 -22.12 16 8 C -0.14 -3.05 5.87 -20.09 -0.12 -3.17 16 9 C -0.07 -1.36 9.49 22.30 0.21 -1.15 16 10 C -0.11 -1.68 9.77 22.24 0.22 -1.46 16 11 C -0.02 -0.34 5.75 -21.24 -0.12 -0.47 16 12 C -0.16 -1.72 9.87 22.38 0.22 -1.50 16 13 C 0.08 0.87 11.07 84.11 0.93 1.80 16 14 N -0.51 -7.42 10.30 -195.41 -2.01 -9.43 16 15 C 0.16 1.81 11.05 85.35 0.94 2.75 16 16 C -0.14 -1.90 5.74 -21.32 -0.12 -2.02 16 17 C -0.06 -0.89 8.37 22.81 0.19 -0.70 16 18 C 0.11 3.38 5.99 86.86 0.52 3.90 16 19 C -0.10 -2.52 2.91 -9.40 -0.03 -2.55 16 20 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 21 C 0.17 5.74 4.54 86.38 0.39 6.14 16 22 N -0.76 -34.97 5.35 -343.46 -1.84 -36.80 16 23 C -0.23 -12.95 10.47 84.03 0.88 -12.07 16 24 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 25 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 26 N -0.98 -63.45 13.97 21.65 0.30 -63.15 16 27 Si 0.95 46.82 27.74 68.60 1.90 48.72 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 30 H -0.25 -11.32 6.52 99.48 0.65 -10.67 16 31 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.07 7.12 -2.39 -0.02 1.05 16 33 H 0.04 0.80 7.34 -2.39 -0.02 0.78 16 34 H 0.11 0.89 6.66 -2.39 -0.02 0.88 16 35 H 0.11 0.88 6.50 -2.38 -0.02 0.86 16 36 H 0.13 2.78 7.63 -2.91 -0.02 2.76 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.20 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.20 1.58 2.71 -10.23 -0.03 1.56 16 42 H 0.05 1.75 8.09 -2.39 -0.02 1.73 16 43 H 0.06 2.02 7.48 -2.39 -0.02 2.00 16 44 H 0.03 1.14 6.94 -2.39 -0.02 1.12 16 45 H 0.04 1.35 8.05 -2.39 -0.02 1.33 16 46 H 0.36 16.32 5.53 -92.71 -0.51 15.80 16 47 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 Total: -1.00 -81.92 375.12 2.11 -79.80 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.41 Total: 19.08 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 6.18 Total: 1.11 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -6.32 Total: -126.59 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.06 Total: -22.12 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Total: -81.92 2.11 -79.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325582460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.472 kcal (2) G-P(sol) polarization free energy of solvation -81.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds