Wall clock time and date at job start Tue Mar 31 2020 23:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47213 * 2 1 4 4 C 1.53003 * 109.46925 * 120.00138 * 2 1 3 5 5 N 1.46506 * 109.46882 * 174.99656 * 4 2 1 6 6 C 1.34775 * 119.99468 * 179.97438 * 5 4 2 7 7 O 1.21507 * 120.00308 * 0.02562 * 6 5 4 8 8 C 1.48180 * 119.99448 * 180.02562 * 6 5 4 9 9 C 1.39104 * 119.66784 * 179.73104 * 8 6 5 10 10 C 1.39722 * 118.91674 * 179.77599 * 9 8 6 11 11 C 1.48369 * 120.87032 * 180.25960 * 10 9 8 12 12 C 1.39345 * 120.12235 * 359.95479 * 11 10 9 13 13 C 1.38020 * 119.87569 * 179.72320 * 12 11 10 14 14 C 1.38330 * 120.11817 * 0.57970 * 13 12 11 15 15 C 1.38321 * 120.24798 * 359.67274 * 14 13 12 16 16 C 1.38014 * 120.12367 * 0.04742 * 15 14 13 17 17 C 1.39729 * 118.25690 * 0.48353 * 10 9 8 18 18 C 1.38323 * 119.21325 * 359.75509 * 17 10 9 19 19 N 1.31578 * 121.02943 * 359.97438 * 18 17 10 20 20 N 1.46507 * 109.47005 * 240.00032 * 2 1 3 21 21 C 1.46502 * 119.99782 * 299.99736 * 20 2 1 22 22 C 1.36931 * 119.99747 * 120.00147 * 20 2 1 23 23 H 1.08001 * 120.00365 * 22.81940 * 22 20 2 24 24 C 1.38817 * 119.99663 * 202.81912 * 22 20 2 25 25 N 1.31613 * 120.00116 * 11.58816 * 24 22 20 26 26 Si 1.86803 * 119.99967 * 191.58744 * 24 22 20 27 27 H 1.48507 * 109.46759 * 59.99951 * 26 24 22 28 28 H 1.48497 * 109.47240 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47047 * 300.00593 * 26 24 22 30 30 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46721 * 299.99892 * 1 2 3 32 32 H 1.09004 * 109.46767 * 60.00183 * 1 2 3 33 33 H 1.09003 * 109.46994 * 54.99944 * 4 2 1 34 34 H 1.08997 * 109.46883 * 294.99503 * 4 2 1 35 35 H 0.96995 * 120.00063 * 0.02562 * 5 4 2 36 36 H 1.08002 * 120.53705 * 359.97438 * 9 8 6 37 37 H 1.07999 * 120.06296 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.94254 * 180.30031 * 13 12 11 39 39 H 1.08003 * 119.87102 * 179.70383 * 14 13 12 40 40 H 1.08000 * 119.93968 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.06171 * 179.97438 * 16 15 14 42 42 H 1.07996 * 120.39751 * 179.72876 * 17 10 9 43 43 H 1.08005 * 119.48413 * 180.02562 * 18 17 10 44 44 H 1.09009 * 109.46623 * 93.85458 * 21 20 2 45 45 H 1.09000 * 109.46995 * 213.85269 * 21 20 2 46 46 H 1.08992 * 109.47408 * 333.85609 * 21 20 2 47 47 H 0.96999 * 119.99930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.1730 -1.4284 2.1912 7 8 3.5688 -1.8843 3.1417 8 6 5.6499 -1.5343 2.1320 9 6 6.3380 -2.1520 3.1712 10 6 7.7300 -2.2474 3.0971 11 6 8.5068 -2.9025 4.1782 12 6 7.8513 -3.4326 5.2877 13 6 8.5785 -4.0459 6.2877 14 6 9.9565 -4.1243 6.1957 15 6 10.6128 -3.5951 5.0990 16 6 9.8952 -2.9847 4.0904 17 6 8.3717 -1.7056 1.9803 18 6 7.6138 -1.1031 0.9925 19 7 6.3034 -1.0344 1.0900 20 7 2.0184 -0.6906 -1.1962 21 6 1.6645 -2.0932 -1.4280 22 6 2.8056 -0.0251 -2.0975 23 1 3.3666 0.8437 -1.7865 24 6 2.8826 -0.4673 -3.4111 25 7 2.0367 -1.3747 -3.8508 26 14 4.1870 0.2255 -4.5549 27 1 5.5344 -0.0611 -4.0002 28 1 4.0575 -0.4052 -5.8931 29 1 4.0056 1.6940 -4.6806 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6053 -1.7199 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9825 -0.4623 0.4319 36 1 5.8047 -2.5541 4.0199 37 1 6.7760 -3.3672 5.3631 38 1 8.0711 -4.4614 7.1458 39 1 10.5220 -4.6008 6.9828 40 1 11.6888 -3.6594 5.0321 41 1 10.4087 -2.5715 3.2348 42 1 9.4466 -1.7562 1.8897 43 1 8.1052 -0.6832 0.1272 44 1 0.7756 -2.1445 -2.0570 45 1 2.4916 -2.5992 -1.9259 46 1 1.4627 -2.5795 -0.4737 47 1 2.0903 -1.6833 -4.7688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329590729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:13 Heat of formation + Delta-G solvation = 49.627298 kcal Electronic energy + Delta-G solvation = -28353.547275 eV Core-core repulsion = 24501.931505 eV Total energy + Delta-G solvation = -3851.615770 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.73857 -39.38547 -38.52816 -36.66159 -34.12307 -33.58663 -32.06726 -31.74436 -30.96390 -29.84658 -29.26222 -26.27191 -25.97368 -24.54432 -24.11837 -23.00972 -22.26473 -21.88364 -20.03750 -19.33292 -18.08194 -17.12349 -16.85077 -16.62335 -15.94016 -15.51963 -15.38660 -15.30343 -14.80622 -14.68419 -14.43650 -14.09043 -13.96194 -13.66230 -13.49259 -13.41074 -13.05611 -12.71523 -12.67777 -12.29655 -12.19603 -11.95967 -11.61776 -11.39731 -11.20039 -11.03645 -10.77478 -10.71150 -10.61108 -10.37922 -10.25509 -10.05738 -9.85237 -9.74756 -9.43486 -9.31314 -9.28751 -8.66220 -8.53826 -8.47078 -6.75350 -5.69887 -3.16721 0.28061 0.73781 1.05094 1.61451 2.93561 3.40334 3.45637 3.46042 3.47279 3.51430 3.99862 4.11665 4.30053 4.42470 4.50686 4.60879 4.68799 4.83687 4.85252 4.91410 5.06141 5.22946 5.37775 5.41508 5.43945 5.46694 5.57911 5.62947 5.72122 5.76327 5.80902 5.95822 6.10232 6.12487 6.15409 6.22348 6.28661 6.33524 6.46600 6.47151 6.60023 6.79133 6.88575 6.90082 7.05585 7.44211 7.70662 7.76100 7.83557 8.11419 8.41352 8.60515 9.25621 9.88316 10.37593 11.34810 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002678 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.439589 B =10453.314594 C =11900.217716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.103 3.897 5 N -0.680 5.680 6 C 0.561 3.439 7 O -0.552 6.552 8 C 0.094 3.906 9 C -0.109 4.109 10 C -0.012 4.012 11 C -0.050 4.050 12 C -0.102 4.102 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.104 4.104 17 C -0.151 4.151 18 C 0.106 3.894 19 N -0.449 5.449 20 N -0.593 5.593 21 C 0.166 3.834 22 C -0.256 4.256 23 H 0.068 0.932 24 C 0.004 3.996 25 N -0.906 5.906 26 Si 0.904 3.096 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.422 0.578 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.140 0.860 43 H 0.165 0.835 44 H 0.027 0.973 45 H 0.042 0.958 46 H -0.004 1.004 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.111 -2.898 17.475 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.023 4.023 5 N -0.330 5.330 6 C 0.345 3.655 7 O -0.432 6.432 8 C -0.045 4.045 9 C -0.130 4.130 10 C -0.019 4.019 11 C -0.050 4.050 12 C -0.120 4.120 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.139 4.139 16 C -0.122 4.122 17 C -0.170 4.170 18 C -0.053 4.053 19 N -0.160 5.160 20 N -0.316 5.316 21 C 0.021 3.979 22 C -0.385 4.385 23 H 0.086 0.914 24 C -0.194 4.194 25 N -0.551 5.551 26 Si 0.734 3.266 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.211 1.211 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.260 0.740 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.158 0.842 43 H 0.182 0.818 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.015 0.985 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.109 -2.885 17.249 22.471 hybrid contribution 1.403 -0.001 -0.563 1.512 sum 15.513 -2.885 16.686 22.965 Atomic orbital electron populations 1.22182 0.97399 1.01378 1.00582 1.20618 0.92610 0.95571 0.86347 0.91285 1.22060 0.79201 1.01513 0.99513 1.45803 1.08299 1.56129 1.22748 1.17846 0.85319 0.79128 0.83202 1.90729 1.68728 1.49574 1.34126 1.21243 0.94900 0.97104 0.91203 1.22147 0.93275 0.97930 0.99657 1.19075 0.92675 0.96300 0.93894 1.18670 0.93067 0.99321 0.93954 1.21366 1.00541 0.96986 0.93111 1.21143 0.94227 0.99320 0.98923 1.21282 0.94667 0.99269 0.98085 1.21104 1.00047 0.98556 0.94149 1.21250 0.92891 0.98923 0.99110 1.22394 1.01605 0.98783 0.94267 1.22789 0.88936 0.95493 0.98055 1.67648 1.10561 1.15292 1.22508 1.43958 1.58124 1.08039 1.21468 1.20721 0.99811 0.83383 0.93940 1.19146 1.18833 1.11282 0.89261 0.91405 1.25013 0.98413 0.99341 0.96644 1.70060 1.36190 1.33140 1.15706 0.86355 0.81799 0.78424 0.80059 1.20936 1.21839 1.21051 0.93153 0.93968 0.92164 0.91837 0.92214 0.73957 0.83393 0.85205 0.85556 0.85869 0.85674 0.85484 0.84221 0.81754 0.95440 0.93887 0.98513 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 2 C 0.16 3.11 2.87 -67.92 -0.19 2.92 16 3 H 0.07 1.36 7.86 -51.93 -0.41 0.95 16 4 C 0.10 1.89 4.93 -4.04 -0.02 1.87 16 5 N -0.68 -12.88 5.38 -61.14 -0.33 -13.21 16 6 C 0.56 10.43 7.81 -12.18 -0.10 10.33 16 7 O -0.55 -11.12 16.32 5.36 0.09 -11.03 16 8 C 0.09 1.53 6.75 -83.06 -0.56 0.97 16 9 C -0.11 -1.51 9.02 -38.71 -0.35 -1.86 16 10 C -0.01 -0.13 5.91 -104.61 -0.62 -0.75 16 11 C -0.05 -0.51 5.88 -104.90 -0.62 -1.13 16 12 C -0.10 -0.98 9.45 -39.25 -0.37 -1.35 16 13 C -0.12 -0.94 10.03 -39.63 -0.40 -1.34 16 14 C -0.11 -0.83 10.04 -39.52 -0.40 -1.22 16 15 C -0.12 -0.88 10.03 -39.63 -0.40 -1.28 16 16 C -0.10 -0.87 9.45 -39.25 -0.37 -1.24 16 17 C -0.15 -1.57 9.51 -38.99 -0.37 -1.94 16 18 C 0.11 1.31 11.17 -17.63 -0.20 1.11 16 19 N -0.45 -7.15 9.53 -9.88 -0.09 -7.24 16 20 N -0.59 -14.19 2.29 -173.48 -0.40 -14.59 16 21 C 0.17 4.08 8.00 59.85 0.48 4.56 16 22 C -0.26 -6.71 9.33 -15.06 -0.14 -6.85 16 23 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 24 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 25 N -0.91 -26.09 10.63 55.49 0.59 -25.50 16 26 Si 0.90 21.52 29.57 -169.99 -5.03 16.50 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.24 6.87 -51.93 -0.36 0.88 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.42 8.43 7.22 -40.82 -0.29 8.13 16 36 H 0.15 1.94 5.92 -52.49 -0.31 1.63 16 37 H 0.13 1.18 6.30 -52.49 -0.33 0.85 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.61 8.06 -52.48 -0.42 0.18 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.82 6.29 -52.48 -0.33 0.49 16 42 H 0.14 0.99 6.33 -52.49 -0.33 0.66 16 43 H 0.17 1.59 8.06 -52.48 -0.42 1.16 16 44 H 0.03 0.73 7.43 -51.92 -0.39 0.34 16 45 H 0.04 1.15 7.20 -51.93 -0.37 0.78 16 46 H 0.00 -0.08 6.53 -51.93 -0.34 -0.42 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -31.70 387.91 -10.05 -41.76 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.37 Total: 7.08 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -4.36 Total: 0.39 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.23 Total: -60.54 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.70 -10.05 -41.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329590729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.384 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds