Wall clock time and date at job start Tue Mar 31 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47213 * 2 1 4 4 C 1.53003 * 109.46925 * 120.00138 * 2 1 3 5 5 N 1.46506 * 109.46882 * 174.99656 * 4 2 1 6 6 C 1.34775 * 119.99468 * 179.97438 * 5 4 2 7 7 O 1.21507 * 120.00308 * 0.02562 * 6 5 4 8 8 C 1.48180 * 119.99448 * 180.02562 * 6 5 4 9 9 C 1.39104 * 119.66784 * 179.73104 * 8 6 5 10 10 C 1.39722 * 118.91674 * 179.77599 * 9 8 6 11 11 C 1.48369 * 120.87032 * 180.25960 * 10 9 8 12 12 C 1.39345 * 120.12235 * 359.95479 * 11 10 9 13 13 C 1.38020 * 119.87569 * 179.72320 * 12 11 10 14 14 C 1.38330 * 120.11817 * 0.57970 * 13 12 11 15 15 C 1.38321 * 120.24798 * 359.67274 * 14 13 12 16 16 C 1.38014 * 120.12367 * 0.04742 * 15 14 13 17 17 C 1.39729 * 118.25690 * 0.48353 * 10 9 8 18 18 C 1.38323 * 119.21325 * 359.75509 * 17 10 9 19 19 N 1.31578 * 121.02943 * 359.97438 * 18 17 10 20 20 N 1.46507 * 109.47005 * 240.00032 * 2 1 3 21 21 C 1.46502 * 119.99782 * 299.99736 * 20 2 1 22 22 C 1.36931 * 119.99747 * 120.00147 * 20 2 1 23 23 H 1.08001 * 120.00365 * 22.81940 * 22 20 2 24 24 C 1.38817 * 119.99663 * 202.81912 * 22 20 2 25 25 N 1.31613 * 120.00116 * 11.58816 * 24 22 20 26 26 Si 1.86803 * 119.99967 * 191.58744 * 24 22 20 27 27 H 1.48507 * 109.46759 * 59.99951 * 26 24 22 28 28 H 1.48497 * 109.47240 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47047 * 300.00593 * 26 24 22 30 30 H 1.08999 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46721 * 299.99892 * 1 2 3 32 32 H 1.09004 * 109.46767 * 60.00183 * 1 2 3 33 33 H 1.09003 * 109.46994 * 54.99944 * 4 2 1 34 34 H 1.08997 * 109.46883 * 294.99503 * 4 2 1 35 35 H 0.96995 * 120.00063 * 0.02562 * 5 4 2 36 36 H 1.08002 * 120.53705 * 359.97438 * 9 8 6 37 37 H 1.07999 * 120.06296 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.94254 * 180.30031 * 13 12 11 39 39 H 1.08003 * 119.87102 * 179.70383 * 14 13 12 40 40 H 1.08000 * 119.93968 * 180.02562 * 15 14 13 41 41 H 1.08003 * 120.06171 * 179.97438 * 16 15 14 42 42 H 1.07996 * 120.39751 * 179.72876 * 17 10 9 43 43 H 1.08005 * 119.48413 * 180.02562 * 18 17 10 44 44 H 1.09009 * 109.46623 * 93.85458 * 21 20 2 45 45 H 1.09000 * 109.46995 * 213.85269 * 21 20 2 46 46 H 1.08992 * 109.47408 * 333.85609 * 21 20 2 47 47 H 0.96999 * 119.99930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8265 1.1905 6 6 4.1730 -1.4284 2.1912 7 8 3.5688 -1.8843 3.1417 8 6 5.6499 -1.5343 2.1320 9 6 6.3380 -2.1520 3.1712 10 6 7.7300 -2.2474 3.0971 11 6 8.5068 -2.9025 4.1782 12 6 7.8513 -3.4326 5.2877 13 6 8.5785 -4.0459 6.2877 14 6 9.9565 -4.1243 6.1957 15 6 10.6128 -3.5951 5.0990 16 6 9.8952 -2.9847 4.0904 17 6 8.3717 -1.7056 1.9803 18 6 7.6138 -1.1031 0.9925 19 7 6.3034 -1.0344 1.0900 20 7 2.0184 -0.6906 -1.1962 21 6 1.6645 -2.0932 -1.4280 22 6 2.8056 -0.0251 -2.0975 23 1 3.3666 0.8437 -1.7865 24 6 2.8826 -0.4673 -3.4111 25 7 2.0367 -1.3747 -3.8508 26 14 4.1870 0.2255 -4.5549 27 1 5.5344 -0.0611 -4.0002 28 1 4.0575 -0.4052 -5.8931 29 1 4.0056 1.6940 -4.6806 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6053 -1.7199 1.2951 34 1 1.7517 -0.1583 2.1369 35 1 3.9825 -0.4623 0.4319 36 1 5.8047 -2.5541 4.0199 37 1 6.7760 -3.3672 5.3631 38 1 8.0711 -4.4614 7.1458 39 1 10.5220 -4.6008 6.9828 40 1 11.6888 -3.6594 5.0321 41 1 10.4087 -2.5715 3.2348 42 1 9.4466 -1.7562 1.8897 43 1 8.1052 -0.6832 0.1272 44 1 0.7756 -2.1445 -2.0570 45 1 2.4916 -2.5992 -1.9259 46 1 1.4627 -2.5795 -0.4737 47 1 2.0903 -1.6833 -4.7688 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329590729.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:11 Heat of formation + Delta-G solvation = 31.739605 kcal Electronic energy + Delta-G solvation = -28354.322944 eV Core-core repulsion = 24501.931505 eV Total energy + Delta-G solvation = -3852.391439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.77810 -40.42959 -39.54529 -38.37913 -35.53103 -34.76933 -33.69057 -32.74703 -31.73844 -31.11469 -30.58488 -28.01750 -27.63413 -25.55860 -25.13217 -24.77148 -23.13003 -22.67271 -21.30225 -20.94185 -19.15606 -18.81302 -18.09121 -17.64054 -17.16397 -16.79017 -16.58055 -16.39360 -16.31604 -15.78219 -15.47381 -15.37376 -15.08253 -14.90221 -14.56612 -14.49587 -14.25798 -14.12132 -13.91907 -13.77577 -13.52159 -13.11587 -13.05057 -12.85625 -12.62746 -12.51570 -12.31298 -12.20854 -12.11728 -11.84118 -11.78602 -11.52708 -11.46178 -11.39063 -10.60624 -10.55983 -10.36307 -9.95730 -9.89980 -9.38488 -8.76238 -7.76946 -5.24879 -0.57198 -0.27084 0.45947 0.81777 1.50286 1.52738 1.58524 1.71111 2.14946 2.55055 2.71429 3.03423 3.14084 3.36755 3.38356 3.61378 3.66616 3.86745 3.93014 4.01876 4.03776 4.07384 4.25816 4.34176 4.41584 4.53408 4.55538 4.57972 4.65375 4.69254 4.71042 4.75175 4.90950 4.99177 5.03516 5.04240 5.11964 5.22755 5.34282 5.41220 5.46859 5.54039 5.55603 5.57664 5.60949 5.69209 5.74201 6.02572 6.37173 6.46951 6.81682 7.13741 7.20272 7.90319 8.35831 9.26705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014584 B = 0.002678 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.439589 B =10453.314594 C =11900.217716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 H 0.073 0.927 4 C 0.112 3.888 5 N -0.686 5.686 6 C 0.559 3.441 7 O -0.576 6.576 8 C 0.065 3.935 9 C -0.116 4.116 10 C -0.009 4.009 11 C -0.074 4.074 12 C -0.120 4.120 13 C -0.127 4.127 14 C -0.113 4.113 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.132 4.132 18 C 0.098 3.902 19 N -0.482 5.482 20 N -0.603 5.603 21 C 0.187 3.813 22 C -0.253 4.253 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.940 5.940 26 Si 0.965 3.035 27 H -0.275 1.275 28 H -0.302 1.302 29 H -0.276 1.276 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.145 0.855 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.182 0.818 43 H 0.192 0.808 44 H 0.003 0.997 45 H 0.012 0.988 46 H 0.016 0.984 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.247 -2.455 18.941 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.049 3.951 3 H 0.091 0.909 4 C -0.014 4.014 5 N -0.335 5.335 6 C 0.344 3.656 7 O -0.457 6.457 8 C -0.072 4.072 9 C -0.137 4.137 10 C -0.017 4.017 11 C -0.074 4.074 12 C -0.139 4.139 13 C -0.145 4.145 14 C -0.131 4.131 15 C -0.141 4.141 16 C -0.123 4.123 17 C -0.151 4.151 18 C -0.061 4.061 19 N -0.194 5.194 20 N -0.326 5.326 21 C 0.042 3.958 22 C -0.383 4.383 23 H 0.093 0.907 24 C -0.248 4.248 25 N -0.587 5.587 26 Si 0.794 3.206 27 H -0.201 1.201 28 H -0.228 1.228 29 H -0.202 1.202 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.162 0.838 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.199 0.801 43 H 0.209 0.791 44 H 0.021 0.979 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.239 -2.417 18.758 25.591 hybrid contribution 0.557 -0.169 -0.856 1.035 sum 17.795 -2.587 17.902 25.374 Atomic orbital electron populations 1.22057 0.95653 1.01370 1.01532 1.20793 0.93865 0.95437 0.85019 0.90881 1.21937 0.79192 1.00869 0.99383 1.45837 1.08358 1.56499 1.22763 1.18252 0.86602 0.78214 0.82508 1.90692 1.69667 1.50516 1.34845 1.20922 0.93646 0.99786 0.92800 1.22175 0.94544 0.97943 0.99009 1.19319 0.91819 0.95734 0.94800 1.18724 0.94007 1.00774 0.93900 1.21485 1.00549 0.97897 0.93930 1.21401 0.94979 0.99125 0.99014 1.21675 0.94404 0.98318 0.98680 1.21490 1.01488 0.97565 0.93544 1.21539 0.92012 0.98601 1.00161 1.22797 1.03431 0.96301 0.92572 1.23330 0.87949 0.95403 0.99394 1.67555 1.12498 1.16511 1.22831 1.44090 1.58336 1.07915 1.22252 1.20356 0.97392 0.84094 0.93970 1.19484 1.18465 1.10844 0.89489 0.90680 1.25750 1.00511 1.00239 0.98301 1.70233 1.38029 1.34936 1.15511 0.85365 0.79703 0.77896 0.77625 1.20140 1.22826 1.20212 0.93664 0.90294 0.93839 0.92998 0.90248 0.74594 0.83754 0.86031 0.84027 0.83327 0.82925 0.83349 0.80129 0.79144 0.97873 0.96912 0.96568 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 9.19 71.98 0.66 -4.47 16 2 C 0.16 6.11 2.87 44.99 0.13 6.24 16 3 H 0.07 2.81 7.86 -2.39 -0.02 2.79 16 4 C 0.11 4.09 4.93 86.38 0.43 4.52 16 5 N -0.69 -26.40 5.38 -465.64 -2.50 -28.91 16 6 C 0.56 21.39 7.81 86.89 0.68 22.07 16 7 O -0.58 -23.91 16.32 -3.74 -0.06 -23.97 16 8 C 0.07 2.18 6.75 41.85 0.28 2.46 16 9 C -0.12 -3.27 9.02 22.84 0.21 -3.07 16 10 C -0.01 -0.20 5.91 -19.86 -0.12 -0.31 16 11 C -0.07 -1.40 5.88 -20.04 -0.12 -1.52 16 12 C -0.12 -2.25 9.45 22.48 0.21 -2.04 16 13 C -0.13 -1.82 10.03 22.24 0.22 -1.60 16 14 C -0.11 -1.28 10.04 22.31 0.22 -1.05 16 15 C -0.12 -1.34 10.03 22.24 0.22 -1.12 16 16 C -0.11 -1.43 9.45 22.49 0.21 -1.22 16 17 C -0.13 -2.42 9.51 22.65 0.22 -2.20 16 18 C 0.10 2.27 11.17 84.75 0.95 3.21 16 19 N -0.48 -15.37 9.53 -185.17 -1.76 -17.13 16 20 N -0.60 -29.21 2.29 -702.76 -1.61 -30.82 16 21 C 0.19 9.48 8.00 127.77 1.02 10.51 16 22 C -0.25 -13.35 9.33 84.04 0.78 -12.56 16 23 H 0.08 3.80 7.82 -2.91 -0.02 3.77 16 24 C -0.05 -2.94 5.12 84.86 0.43 -2.51 16 25 N -0.94 -55.68 10.63 21.65 0.23 -55.45 16 26 Si 0.97 44.68 29.57 68.60 2.03 46.70 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 29 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 30 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.05 2.02 6.87 -2.39 -0.02 2.01 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.42 16.95 7.22 -92.71 -0.67 16.29 16 36 H 0.14 4.03 5.92 -2.91 -0.02 4.01 16 37 H 0.12 2.34 6.30 -2.91 -0.02 2.32 16 38 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 40 H 0.15 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.15 1.25 6.29 -2.91 -0.02 1.23 16 42 H 0.18 1.73 6.33 -2.91 -0.02 1.72 16 43 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.00 0.17 7.43 -2.38 -0.02 0.15 16 45 H 0.01 0.68 7.20 -2.39 -0.02 0.67 16 46 H 0.02 0.73 6.53 -2.39 -0.02 0.72 16 47 H 0.24 14.27 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -70.92 387.91 3.30 -67.62 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.33 Total: 26.62 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 6.65 Total: 15.34 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -5.64 Total: -132.31 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.06 Total: -23.97 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -70.92 3.30 -67.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329590729.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.359 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds