Wall clock time and date at job start Tue Mar 31 2020 23:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47414 * 2 1 4 4 C 1.53002 * 109.47094 * 240.00194 * 2 1 3 5 5 N 1.46501 * 109.47300 * 184.99773 * 4 2 1 6 6 C 1.34771 * 119.99897 * 179.97438 * 5 4 2 7 7 O 1.21511 * 120.00539 * 0.02562 * 6 5 4 8 8 C 1.48185 * 119.99702 * 180.02562 * 6 5 4 9 9 C 1.39099 * 119.66611 * 179.97438 * 8 6 5 10 10 C 1.39727 * 118.91631 * 179.97438 * 9 8 6 11 11 C 1.48372 * 120.87268 * 179.97438 * 10 9 8 12 12 C 1.39352 * 120.11902 * 359.72547 * 11 10 9 13 13 C 1.38020 * 119.87171 * 179.72123 * 12 11 10 14 14 C 1.38319 * 120.12223 * 0.55510 * 13 12 11 15 15 C 1.38326 * 120.24926 * 359.71973 * 14 13 12 16 16 C 1.38019 * 120.11994 * 0.02562 * 15 14 13 17 17 C 1.39732 * 118.25359 * 0.02562 * 10 9 8 18 18 C 1.38316 * 119.21649 * 359.97438 * 17 10 9 19 19 N 1.31578 * 121.02332 * 359.74349 * 18 17 10 20 20 N 1.46496 * 109.47406 * 120.00430 * 2 1 3 21 21 C 1.46503 * 120.00236 * 59.99529 * 20 2 1 22 22 C 1.36945 * 119.99867 * 239.99960 * 20 2 1 23 23 H 1.07993 * 120.00369 * 336.48867 * 22 20 2 24 24 C 1.38811 * 119.99656 * 156.48284 * 22 20 2 25 25 N 1.31619 * 120.00569 * 330.37264 * 24 22 20 26 26 Si 1.86804 * 119.99896 * 150.09454 * 24 22 20 27 27 H 1.48503 * 109.46784 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46915 * 119.99935 * 26 24 22 29 29 H 1.48497 * 109.47540 * 240.00260 * 26 24 22 30 30 H 1.08996 * 109.47038 * 59.99588 * 1 2 3 31 31 H 1.08992 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46866 * 300.00187 * 1 2 3 33 33 H 1.08995 * 109.47052 * 305.00066 * 4 2 1 34 34 H 1.09004 * 109.46961 * 64.99949 * 4 2 1 35 35 H 0.97000 * 119.99872 * 0.02562 * 5 4 2 36 36 H 1.08002 * 120.54564 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.06782 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.93654 * 180.27755 * 13 12 11 39 39 H 1.07998 * 119.87855 * 179.73818 * 14 13 12 40 40 H 1.07997 * 119.94297 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.06279 * 180.02562 * 16 15 14 42 42 H 1.08007 * 120.38874 * 179.97438 * 17 10 9 43 43 H 1.07995 * 119.48672 * 179.97438 * 18 17 10 44 44 H 1.08998 * 109.47001 * 274.79863 * 21 20 2 45 45 H 1.08997 * 109.46637 * 34.79785 * 21 20 2 46 46 H 1.08991 * 109.47173 * 154.79898 * 21 20 2 47 47 H 0.97007 * 119.99377 * 353.95848 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1908 7 8 3.5687 -1.8849 -3.1414 8 6 5.6497 -1.5359 -2.1312 9 6 6.3372 -2.1598 -3.1670 10 6 7.7296 -2.2514 -3.0950 11 6 8.5063 -2.9083 -4.1751 12 6 7.8496 -3.4500 -5.2784 13 6 8.5776 -4.0549 -6.2830 14 6 9.9554 -4.1340 -6.1906 15 6 10.6120 -3.6030 -5.0949 16 6 9.8945 -2.9913 -4.0870 17 6 8.3713 -1.7089 -1.9785 18 6 7.6136 -1.1048 -0.9916 19 7 6.3038 -1.0302 -1.0925 20 7 2.0184 -0.6907 1.1961 21 6 1.6645 -2.0933 1.4279 22 6 2.8057 -0.0252 2.0975 23 1 3.3753 0.8370 1.7838 24 6 2.8715 -0.4588 3.4145 25 7 1.8383 -1.0645 3.9604 26 14 4.4293 -0.1897 4.4097 27 1 5.4393 0.5036 3.5703 28 1 4.1190 0.6432 5.5993 29 1 4.9678 -1.5015 4.8507 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4628 -0.4317 36 1 5.8036 -2.5662 -4.0135 37 1 6.7736 -3.3924 -5.3497 38 1 8.0701 -4.4711 -7.1407 39 1 10.5208 -4.6119 -6.9769 40 1 11.6879 -3.6679 -5.0276 41 1 10.4081 -2.5767 -3.2322 42 1 9.4463 -1.7608 -1.8873 43 1 8.1050 -0.6845 -0.1266 44 1 0.6955 -2.1462 1.9243 45 1 1.6129 -2.6174 0.4736 46 1 2.4215 -2.5596 2.0582 47 1 1.0018 -1.1302 3.4736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329590730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:16 Heat of formation + Delta-G solvation = 45.786662 kcal Electronic energy + Delta-G solvation = -28403.129873 eV Core-core repulsion = 24551.347560 eV Total energy + Delta-G solvation = -3851.782313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.76499 -39.41642 -38.57208 -36.84708 -34.19829 -33.73140 -32.14144 -31.78226 -30.98170 -29.86193 -29.19393 -26.34613 -26.13752 -24.56899 -24.13856 -22.79270 -22.26470 -21.90305 -20.07629 -19.47121 -18.13192 -17.45973 -17.10032 -16.65397 -15.96082 -15.55132 -15.38458 -15.36128 -14.72908 -14.65985 -14.46324 -14.06476 -13.81555 -13.75585 -13.51814 -13.47136 -13.41065 -13.05617 -12.75833 -12.27898 -12.18542 -12.11493 -11.63416 -11.56622 -11.22277 -11.20497 -10.75893 -10.65129 -10.62926 -10.51873 -10.20198 -10.09823 -10.01137 -9.47819 -9.44035 -9.33090 -9.30935 -8.67956 -8.55155 -8.31675 -6.95457 -6.06213 -3.18321 0.26181 0.71273 1.03693 1.59607 2.90026 3.42296 3.49278 3.53059 3.55642 3.69420 3.96929 4.09660 4.27613 4.40547 4.59255 4.60183 4.67131 4.81960 4.82995 4.89174 5.04619 5.21074 5.23734 5.35592 5.39202 5.42228 5.53216 5.57107 5.70259 5.74050 5.78824 5.85760 6.01301 6.09229 6.10277 6.13982 6.21174 6.28187 6.34146 6.44678 6.57769 6.58581 6.70416 6.80111 6.89140 7.00563 7.15693 7.67801 7.99642 8.07085 8.54212 8.59356 9.12218 9.86309 10.25456 11.22024 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.002714 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.383434 B =10314.227464 C =11795.120370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.071 0.929 4 C 0.105 3.895 5 N -0.681 5.681 6 C 0.561 3.439 7 O -0.553 6.553 8 C 0.093 3.907 9 C -0.109 4.109 10 C -0.011 4.011 11 C -0.050 4.050 12 C -0.102 4.102 13 C -0.118 4.118 14 C -0.115 4.115 15 C -0.120 4.120 16 C -0.103 4.103 17 C -0.150 4.150 18 C 0.107 3.893 19 N -0.449 5.449 20 N -0.595 5.595 21 C 0.137 3.863 22 C -0.358 4.358 23 H 0.060 0.940 24 C -0.019 4.019 25 N -0.911 5.911 26 Si 1.061 2.939 27 H -0.290 1.290 28 H -0.297 1.297 29 H -0.292 1.292 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.423 0.577 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.008 0.992 45 H 0.014 0.986 46 H 0.052 0.948 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.678 -3.400 -18.031 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.089 0.911 4 C -0.021 4.021 5 N -0.331 5.331 6 C 0.345 3.655 7 O -0.432 6.432 8 C -0.045 4.045 9 C -0.130 4.130 10 C -0.019 4.019 11 C -0.050 4.050 12 C -0.120 4.120 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.138 4.138 16 C -0.121 4.121 17 C -0.170 4.170 18 C -0.052 4.052 19 N -0.160 5.160 20 N -0.318 5.318 21 C -0.009 4.009 22 C -0.486 4.486 23 H 0.077 0.923 24 C -0.222 4.222 25 N -0.551 5.551 26 Si 0.892 3.108 27 H -0.216 1.216 28 H -0.224 1.224 29 H -0.218 1.218 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.262 0.738 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.158 0.842 43 H 0.183 0.817 44 H 0.026 0.974 45 H 0.032 0.968 46 H 0.071 0.929 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.439 -3.591 -16.526 22.899 hybrid contribution -0.057 0.028 -1.624 1.625 sum 15.382 -3.563 -18.150 24.057 Atomic orbital electron populations 1.22193 0.97533 1.01257 1.00776 1.20640 0.92361 0.95755 0.86336 0.91079 1.21997 0.79364 1.01335 0.99426 1.45809 1.08208 1.56189 1.22870 1.17865 0.85382 0.79073 0.83154 1.90730 1.68758 1.49590 1.34091 1.21215 0.94823 0.97128 0.91350 1.22143 0.93296 0.97954 0.99613 1.19079 0.92648 0.96297 0.93901 1.18667 0.93074 0.99261 0.94038 1.21365 1.00514 0.96991 0.93145 1.21140 0.94231 0.99404 0.98845 1.21282 0.94667 0.99224 0.98107 1.21109 1.00056 0.98527 0.94149 1.21250 0.92888 0.98915 0.99095 1.22404 1.01637 0.98728 0.94222 1.22798 0.88912 0.95439 0.98084 1.67644 1.10600 1.15355 1.22427 1.44030 1.58760 1.06872 1.22153 1.20895 0.98457 0.84926 0.96583 1.19954 1.21747 1.15611 0.91304 0.92257 1.25699 1.02894 0.99663 0.93937 1.70721 1.01580 1.44780 1.37977 0.83607 0.75762 0.76136 0.75326 1.21556 1.22420 1.21840 0.93702 0.93263 0.92271 0.91988 0.92134 0.73804 0.83414 0.85233 0.85561 0.85859 0.85652 0.85462 0.84168 0.81671 0.97396 0.96792 0.92912 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.19 37.16 0.34 -2.47 16 2 C 0.16 3.12 2.88 -67.93 -0.20 2.93 16 3 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 4 C 0.10 1.92 4.90 -4.04 -0.02 1.90 16 5 N -0.68 -12.90 5.38 -61.14 -0.33 -13.23 16 6 C 0.56 10.40 7.81 -12.18 -0.10 10.30 16 7 O -0.55 -11.08 16.32 5.36 0.09 -10.99 16 8 C 0.09 1.51 6.75 -83.06 -0.56 0.95 16 9 C -0.11 -1.50 9.02 -38.71 -0.35 -1.85 16 10 C -0.01 -0.13 5.91 -104.61 -0.62 -0.75 16 11 C -0.05 -0.51 5.88 -104.90 -0.62 -1.13 16 12 C -0.10 -0.97 9.45 -39.25 -0.37 -1.34 16 13 C -0.12 -0.94 10.03 -39.63 -0.40 -1.33 16 14 C -0.11 -0.82 10.04 -39.52 -0.40 -1.21 16 15 C -0.12 -0.87 10.03 -39.63 -0.40 -1.26 16 16 C -0.10 -0.86 9.45 -39.25 -0.37 -1.23 16 17 C -0.15 -1.54 9.51 -38.99 -0.37 -1.91 16 18 C 0.11 1.30 11.17 -17.63 -0.20 1.10 16 19 N -0.45 -7.12 9.52 -9.88 -0.09 -7.22 16 20 N -0.59 -14.08 2.16 -173.49 -0.37 -14.46 16 21 C 0.14 3.24 8.05 59.85 0.48 3.72 16 22 C -0.36 -9.46 9.12 -15.06 -0.14 -9.60 16 23 H 0.06 1.58 7.95 -52.49 -0.42 1.16 16 24 C -0.02 -0.52 4.59 -17.43 -0.08 -0.60 16 25 N -0.91 -26.91 12.68 55.49 0.70 -26.20 16 26 Si 1.06 24.97 30.01 -169.99 -5.10 19.87 16 27 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.30 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.87 7.67 -51.93 -0.40 0.47 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.19 6.92 -51.93 -0.36 0.83 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.42 8.52 7.22 -40.82 -0.29 8.23 16 36 H 0.15 1.92 5.92 -52.49 -0.31 1.61 16 37 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 38 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.13 0.80 6.29 -52.49 -0.33 0.47 16 42 H 0.14 0.97 6.33 -52.48 -0.33 0.64 16 43 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 44 H 0.01 0.20 6.98 -51.93 -0.36 -0.17 16 45 H 0.01 0.30 6.56 -51.93 -0.34 -0.04 16 46 H 0.05 1.37 7.15 -51.93 -0.37 1.00 16 47 H 0.27 8.05 6.45 -40.82 -0.26 7.79 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -32.13 387.43 -9.89 -42.02 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.28 Total: 8.15 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -4.35 Total: -3.78 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.09 Total: -61.10 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.10 Total: 19.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.13 -9.89 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329590730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.806 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds