Wall clock time and date at job start Tue Mar 31 2020 23:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47414 * 2 1 4 4 C 1.53002 * 109.47094 * 240.00194 * 2 1 3 5 5 N 1.46501 * 109.47300 * 184.99773 * 4 2 1 6 6 C 1.34771 * 119.99897 * 179.97438 * 5 4 2 7 7 O 1.21511 * 120.00539 * 0.02562 * 6 5 4 8 8 C 1.48185 * 119.99702 * 180.02562 * 6 5 4 9 9 C 1.39099 * 119.66611 * 179.97438 * 8 6 5 10 10 C 1.39727 * 118.91631 * 179.97438 * 9 8 6 11 11 C 1.48372 * 120.87268 * 179.97438 * 10 9 8 12 12 C 1.39352 * 120.11902 * 359.72547 * 11 10 9 13 13 C 1.38020 * 119.87171 * 179.72123 * 12 11 10 14 14 C 1.38319 * 120.12223 * 0.55510 * 13 12 11 15 15 C 1.38326 * 120.24926 * 359.71973 * 14 13 12 16 16 C 1.38019 * 120.11994 * 0.02562 * 15 14 13 17 17 C 1.39732 * 118.25359 * 0.02562 * 10 9 8 18 18 C 1.38316 * 119.21649 * 359.97438 * 17 10 9 19 19 N 1.31578 * 121.02332 * 359.74349 * 18 17 10 20 20 N 1.46496 * 109.47406 * 120.00430 * 2 1 3 21 21 C 1.46503 * 120.00236 * 59.99529 * 20 2 1 22 22 C 1.36945 * 119.99867 * 239.99960 * 20 2 1 23 23 H 1.07993 * 120.00369 * 336.48867 * 22 20 2 24 24 C 1.38811 * 119.99656 * 156.48284 * 22 20 2 25 25 N 1.31619 * 120.00569 * 330.37264 * 24 22 20 26 26 Si 1.86804 * 119.99896 * 150.09454 * 24 22 20 27 27 H 1.48503 * 109.46784 * 0.02562 * 26 24 22 28 28 H 1.48502 * 109.46915 * 119.99935 * 26 24 22 29 29 H 1.48497 * 109.47540 * 240.00260 * 26 24 22 30 30 H 1.08996 * 109.47038 * 59.99588 * 1 2 3 31 31 H 1.08992 * 109.47085 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46866 * 300.00187 * 1 2 3 33 33 H 1.08995 * 109.47052 * 305.00066 * 4 2 1 34 34 H 1.09004 * 109.46961 * 64.99949 * 4 2 1 35 35 H 0.97000 * 119.99872 * 0.02562 * 5 4 2 36 36 H 1.08002 * 120.54564 * 0.02562 * 9 8 6 37 37 H 1.07997 * 120.06782 * 0.02562 * 12 11 10 38 38 H 1.08004 * 119.93654 * 180.27755 * 13 12 11 39 39 H 1.07998 * 119.87855 * 179.73818 * 14 13 12 40 40 H 1.07997 * 119.94297 * 179.97438 * 15 14 13 41 41 H 1.07999 * 120.06279 * 180.02562 * 16 15 14 42 42 H 1.08007 * 120.38874 * 179.97438 * 17 10 9 43 43 H 1.07995 * 119.48672 * 179.97438 * 18 17 10 44 44 H 1.08998 * 109.47001 * 274.79863 * 21 20 2 45 45 H 1.08997 * 109.46637 * 34.79785 * 21 20 2 46 46 H 1.08991 * 109.47173 * 154.79898 * 21 20 2 47 47 H 0.97007 * 119.99377 * 353.95848 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1729 -1.4291 -2.1908 7 8 3.5687 -1.8849 -3.1414 8 6 5.6497 -1.5359 -2.1312 9 6 6.3372 -2.1598 -3.1670 10 6 7.7296 -2.2514 -3.0950 11 6 8.5063 -2.9083 -4.1751 12 6 7.8496 -3.4500 -5.2784 13 6 8.5776 -4.0549 -6.2830 14 6 9.9554 -4.1340 -6.1906 15 6 10.6120 -3.6030 -5.0949 16 6 9.8945 -2.9913 -4.0870 17 6 8.3713 -1.7089 -1.9785 18 6 7.6136 -1.1048 -0.9916 19 7 6.3038 -1.0302 -1.0925 20 7 2.0184 -0.6907 1.1961 21 6 1.6645 -2.0933 1.4279 22 6 2.8057 -0.0252 2.0975 23 1 3.3753 0.8370 1.7838 24 6 2.8715 -0.4588 3.4145 25 7 1.8383 -1.0645 3.9604 26 14 4.4293 -0.1897 4.4097 27 1 5.4393 0.5036 3.5703 28 1 4.1190 0.6432 5.5993 29 1 4.9678 -1.5015 4.8507 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4628 -0.4317 36 1 5.8036 -2.5662 -4.0135 37 1 6.7736 -3.3924 -5.3497 38 1 8.0701 -4.4711 -7.1407 39 1 10.5208 -4.6119 -6.9769 40 1 11.6879 -3.6679 -5.0276 41 1 10.4081 -2.5767 -3.2322 42 1 9.4463 -1.7608 -1.8873 43 1 8.1050 -0.6845 -0.1266 44 1 0.6955 -2.1462 1.9243 45 1 1.6129 -2.6174 0.4736 46 1 2.4215 -2.5596 2.0582 47 1 1.0018 -1.1302 3.4736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329590730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:15 Heat of formation + Delta-G solvation = 27.577122 kcal Electronic energy + Delta-G solvation = -28403.919498 eV Core-core repulsion = 24551.347560 eV Total energy + Delta-G solvation = -3852.571938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.80017 -40.46897 -39.57031 -38.57504 -35.71455 -34.81249 -33.75321 -32.75635 -31.74030 -31.05775 -30.59392 -28.14864 -27.70854 -25.55804 -25.10174 -24.61324 -23.14682 -22.68209 -21.36166 -21.07703 -19.49809 -19.08901 -18.11351 -17.67269 -17.01812 -16.82095 -16.62772 -16.38801 -16.17793 -15.77342 -15.46030 -15.43571 -15.37752 -15.09486 -14.83974 -14.50520 -14.24924 -14.12465 -13.94142 -13.78359 -13.66651 -13.20837 -13.12524 -12.91021 -12.70444 -12.48563 -12.40003 -12.21447 -11.87867 -11.84885 -11.79624 -11.47349 -11.46598 -11.39596 -10.59791 -10.40442 -10.37701 -10.01092 -9.90520 -9.39183 -8.97654 -8.20772 -5.29913 -0.58363 -0.28429 0.45399 0.80951 1.61988 1.67929 1.68646 1.85538 2.10184 2.68686 2.70212 3.02511 3.11715 3.25379 3.35404 3.50038 3.62301 3.85724 3.91750 3.92448 4.02113 4.06145 4.23101 4.25266 4.39774 4.45446 4.52743 4.54384 4.56500 4.62305 4.65031 4.68643 4.77316 4.87220 4.93105 4.98192 5.03521 5.11279 5.11369 5.17905 5.29627 5.44690 5.49029 5.54700 5.57152 5.60188 5.90018 6.02032 6.42474 6.44004 6.79436 7.06067 7.11612 7.81978 8.22010 9.05966 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.002714 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.383434 B =10314.227464 C =11795.120370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.068 0.932 4 C 0.114 3.886 5 N -0.687 5.687 6 C 0.559 3.441 7 O -0.576 6.576 8 C 0.064 3.936 9 C -0.116 4.116 10 C -0.009 4.009 11 C -0.074 4.074 12 C -0.121 4.121 13 C -0.128 4.128 14 C -0.113 4.113 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.131 4.131 18 C 0.099 3.901 19 N -0.483 5.483 20 N -0.604 5.604 21 C 0.154 3.846 22 C -0.348 4.348 23 H 0.058 0.942 24 C -0.073 4.073 25 N -0.943 5.943 26 Si 1.108 2.892 27 H -0.266 1.266 28 H -0.297 1.297 29 H -0.295 1.295 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.417 0.583 36 H 0.144 0.856 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.182 0.818 43 H 0.193 0.807 44 H -0.004 1.004 45 H 0.033 0.967 46 H 0.023 0.977 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.001 -3.331 -19.511 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.050 3.950 3 H 0.087 0.913 4 C -0.012 4.012 5 N -0.336 5.336 6 C 0.345 3.655 7 O -0.457 6.457 8 C -0.072 4.072 9 C -0.137 4.137 10 C -0.017 4.017 11 C -0.074 4.074 12 C -0.139 4.139 13 C -0.145 4.145 14 C -0.131 4.131 15 C -0.141 4.141 16 C -0.123 4.123 17 C -0.150 4.150 18 C -0.060 4.060 19 N -0.195 5.195 20 N -0.328 5.328 21 C 0.008 3.992 22 C -0.478 4.478 23 H 0.076 0.924 24 C -0.270 4.270 25 N -0.585 5.585 26 Si 0.934 3.066 27 H -0.191 1.191 28 H -0.224 1.224 29 H -0.222 1.222 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.255 0.745 36 H 0.162 0.838 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.200 0.800 43 H 0.210 0.790 44 H 0.014 0.986 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.750 -3.506 -18.053 26.263 hybrid contribution -0.968 -0.019 -1.335 1.650 sum 17.782 -3.525 -19.388 26.543 Atomic orbital electron populations 1.22067 0.95660 1.01468 1.01608 1.20784 0.93722 0.95326 0.85209 0.91350 1.21871 0.79370 1.00809 0.99136 1.45844 1.08265 1.56593 1.22888 1.18277 0.86680 0.78138 0.82434 1.90694 1.69699 1.50523 1.34788 1.20888 0.93541 0.99827 0.92979 1.22169 0.94578 0.97967 0.98953 1.19323 0.91776 0.95753 0.94814 1.18722 0.94018 1.00686 0.93987 1.21482 1.00509 0.97916 0.93986 1.21396 0.94989 0.99232 0.98927 1.21673 0.94398 0.98291 0.98711 1.21496 1.01500 0.97531 0.93539 1.21542 0.92000 0.98578 1.00144 1.22813 1.03480 0.96203 0.92501 1.23353 0.87897 0.95318 0.99435 1.67551 1.12567 1.16574 1.22760 1.44147 1.59055 1.06968 1.22647 1.20639 0.96721 0.85185 0.96663 1.20151 1.21145 1.14992 0.91469 0.92402 1.26920 1.04610 0.99926 0.95538 1.70848 1.01746 1.47550 1.38345 0.82978 0.73249 0.75975 0.74417 1.19092 1.22440 1.22173 0.90173 0.93386 0.94039 0.92840 0.90316 0.74525 0.83811 0.86085 0.84062 0.83335 0.82897 0.83282 0.80034 0.78976 0.98609 0.94900 0.95821 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.19 71.98 0.66 -4.52 16 2 C 0.16 6.18 2.88 44.99 0.13 6.31 16 3 H 0.07 2.74 7.87 -2.39 -0.02 2.72 16 4 C 0.11 4.16 4.90 86.38 0.42 4.58 16 5 N -0.69 -26.46 5.38 -465.65 -2.50 -28.97 16 6 C 0.56 21.31 7.81 86.89 0.68 21.99 16 7 O -0.58 -23.78 16.32 -3.75 -0.06 -23.84 16 8 C 0.06 2.14 6.75 41.85 0.28 2.42 16 9 C -0.12 -3.24 9.02 22.84 0.21 -3.04 16 10 C -0.01 -0.19 5.91 -19.86 -0.12 -0.31 16 11 C -0.07 -1.38 5.88 -20.04 -0.12 -1.50 16 12 C -0.12 -2.23 9.45 22.49 0.21 -2.02 16 13 C -0.13 -1.81 10.03 22.24 0.22 -1.59 16 14 C -0.11 -1.25 10.04 22.31 0.22 -1.03 16 15 C -0.12 -1.31 10.03 22.24 0.22 -1.09 16 16 C -0.10 -1.39 9.45 22.48 0.21 -1.18 16 17 C -0.13 -2.34 9.51 22.65 0.22 -2.12 16 18 C 0.10 2.24 11.17 84.75 0.95 3.18 16 19 N -0.48 -15.25 9.52 -185.19 -1.76 -17.01 16 20 N -0.60 -29.04 2.16 -702.80 -1.52 -30.56 16 21 C 0.15 7.47 8.05 127.77 1.03 8.50 16 22 C -0.35 -18.61 9.12 84.03 0.77 -17.85 16 23 H 0.06 3.08 7.95 -2.91 -0.02 3.06 16 24 C -0.07 -4.08 4.59 84.86 0.39 -3.69 16 25 N -0.94 -57.12 12.68 21.65 0.27 -56.85 16 26 Si 1.11 50.68 30.01 68.60 2.06 52.74 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 29 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.67 7.67 -2.39 -0.02 1.66 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 2.05 6.92 -2.39 -0.02 2.03 16 34 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.42 17.12 7.22 -92.71 -0.67 16.45 16 36 H 0.14 3.98 5.92 -2.91 -0.02 3.97 16 37 H 0.12 2.31 6.30 -2.91 -0.02 2.29 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.15 0.77 8.06 -2.91 -0.02 0.74 16 41 H 0.15 1.20 6.29 -2.91 -0.02 1.18 16 42 H 0.18 1.65 6.33 -2.91 -0.02 1.63 16 43 H 0.19 3.10 8.06 -2.91 -0.02 3.07 16 44 H 0.00 -0.21 6.98 -2.39 -0.02 -0.23 16 45 H 0.03 1.44 6.56 -2.39 -0.02 1.43 16 46 H 0.02 1.25 7.15 -2.39 -0.02 1.24 16 47 H 0.26 15.78 6.45 -92.70 -0.60 15.18 16 Total: -1.00 -71.94 387.43 3.58 -68.36 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.50 Total: 29.06 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.59 Total: 7.06 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.51 Total: -133.38 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.06 Total: -23.84 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.74 kcal Total: -71.94 3.58 -68.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329590730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.940 kcal (2) G-P(sol) polarization free energy of solvation -71.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds