Wall clock time and date at job start Tue Mar 31 2020 22:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 5 5 C 1.34777 * 119.99525 * 274.99614 * 4 2 1 6 6 O 1.21283 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99675 * 179.72583 * 5 4 2 8 8 C 1.53004 * 109.47208 * 180.27843 * 7 5 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 5 10 10 N 1.46506 * 109.46748 * 179.97438 * 9 8 7 11 11 C 1.36368 * 125.96891 * 269.69012 * 10 9 8 12 12 O 1.35633 * 125.98358 * 0.04281 * 11 10 9 13 13 N 1.30908 * 108.02499 * 179.88557 * 11 10 9 14 14 N 1.40108 * 107.93801 * 0.38029 * 13 11 10 15 15 C 1.30900 * 107.94370 * 359.75591 * 14 13 11 16 16 O 1.35626 * 125.99302 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 18 18 C 1.53941 * 113.74137 * 158.74020 * 17 2 1 19 19 N 1.47815 * 86.03632 * 222.08095 * 18 17 2 20 20 C 1.36934 * 134.45841 * 204.64086 * 19 18 17 21 21 H 1.08004 * 120.00340 * 179.86669 * 20 19 18 22 22 C 1.38808 * 119.99954 * 359.87132 * 20 19 18 23 23 N 1.31613 * 120.00216 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99986 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47062 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46971 * 119.99974 * 24 22 20 27 27 H 1.48504 * 109.46833 * 239.99851 * 24 22 20 28 28 C 1.47584 * 91.04884 * 24.54975 * 19 18 17 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 0.97000 * 120.00580 * 95.00360 * 4 2 1 33 33 H 1.09009 * 109.47352 * 300.27556 * 7 5 4 34 34 H 1.08998 * 109.47585 * 60.27844 * 7 5 4 35 35 H 1.09000 * 109.46887 * 300.00372 * 8 7 5 36 36 H 1.08998 * 109.46846 * 59.99549 * 8 7 5 37 37 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 38 38 H 1.09001 * 109.47109 * 60.00906 * 9 8 7 39 39 H 0.96698 * 113.99983 * 89.99808 * 12 11 10 40 40 H 0.96704 * 114.00419 * 270.02877 * 16 15 14 41 41 H 1.08997 * 112.94270 * 290.32998 * 17 2 1 42 42 H 1.09002 * 113.77218 * 336.34294 * 18 17 2 43 43 H 1.09005 * 113.77253 * 107.74557 * 18 17 2 44 44 H 0.97005 * 120.00418 * 180.02562 * 23 22 20 45 45 H 1.08999 * 113.76702 * 221.14703 * 28 19 18 46 46 H 1.09003 * 113.87174 * 89.76564 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1582 2.4118 7 6 2.6437 -0.7305 3.5889 8 6 2.6899 0.2511 4.7616 9 6 3.1934 -0.4720 6.0124 10 7 3.2382 0.4681 7.1351 11 6 4.3028 1.2437 7.4884 12 8 5.5050 1.2803 6.8614 13 7 3.9600 1.9491 8.5365 14 7 2.6421 1.6117 8.8715 15 6 2.2245 0.7160 8.0131 16 8 0.9987 0.1357 7.9995 17 6 2.0400 -0.7211 -1.2494 18 6 3.4847 -0.3518 -1.6318 19 7 2.9978 -0.3173 -3.0270 20 6 3.5874 -0.4752 -4.2528 21 1 2.9926 -0.4032 -5.1514 22 6 4.9495 -0.7278 -4.3404 23 7 5.6744 -0.8151 -3.2454 24 14 5.7537 -0.9438 -6.0126 25 1 4.7283 -0.8009 -7.0772 26 1 6.8038 0.0903 -6.1941 27 1 6.3681 -2.2932 -6.0957 28 6 1.6213 -0.0469 -2.5685 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 2.2492 -1.6319 1.1524 33 1 1.9698 -1.5528 3.8298 34 1 3.6437 -1.1227 3.4038 35 1 3.3637 1.0734 4.5208 36 1 1.6899 0.6432 4.9468 37 1 2.5192 -1.2940 6.2531 38 1 4.1934 -0.8643 5.8275 39 1 5.5590 1.9354 6.1523 40 1 0.9419 -0.6760 8.5221 41 1 1.8529 -1.7946 -1.2265 42 1 3.8047 0.6193 -1.2540 43 1 4.2071 -1.1445 -1.4369 44 1 6.6263 -0.9913 -3.3066 45 1 0.8586 -0.5965 -3.1201 46 1 1.3908 1.0135 -2.4660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330022059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:20 Heat of formation + Delta-G solvation = -13.233657 kcal Electronic energy + Delta-G solvation = -28857.173014 eV Core-core repulsion = 24591.982125 eV Total energy + Delta-G solvation = -4265.190889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.29746 -41.02192 -39.68940 -39.11493 -38.03296 -36.76626 -36.06746 -34.18767 -33.48572 -31.69562 -30.67332 -29.37387 -28.13988 -26.54995 -25.63974 -24.08263 -23.82119 -22.88425 -22.39641 -21.38742 -20.53658 -19.78037 -19.63901 -18.77581 -18.12928 -17.69944 -17.32565 -17.20128 -16.90650 -16.72079 -16.36776 -15.74544 -15.39736 -15.32042 -14.94734 -14.71920 -14.55899 -14.16373 -13.92890 -13.59594 -13.49538 -13.34651 -13.28555 -13.11034 -13.01264 -12.91368 -12.87774 -12.69622 -12.51431 -12.32408 -11.96859 -11.92274 -11.75338 -11.50127 -11.47532 -11.25078 -11.08164 -10.90248 -10.73535 -10.54806 -9.97159 -8.92756 -7.92094 -5.25178 0.52381 0.75368 1.15724 1.44798 1.45790 1.55858 1.75008 2.22722 2.27559 2.46274 2.92055 3.29131 3.37883 3.52387 3.63476 3.78558 3.91622 3.97104 4.08172 4.18316 4.30812 4.32081 4.40227 4.45610 4.52741 4.59969 4.70961 4.72526 4.74720 4.83686 4.87791 5.01493 5.05594 5.12810 5.18089 5.25482 5.33550 5.35124 5.51288 5.59253 5.69331 5.93383 6.24421 6.47496 6.68537 6.81471 6.91602 7.38186 7.59794 8.55576 9.24919 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018060 B = 0.001948 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.020573 B =14371.765635 C =15518.631770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 H 0.053 0.947 4 N -0.712 5.712 5 C 0.505 3.495 6 O -0.595 6.595 7 C -0.126 4.126 8 C -0.112 4.112 9 C 0.102 3.898 10 N -0.505 5.505 11 C 0.415 3.585 12 O -0.436 6.436 13 N -0.344 5.344 14 N -0.346 5.346 15 C 0.419 3.581 16 O -0.434 6.434 17 C -0.107 4.107 18 C 0.169 3.831 19 N -0.646 5.646 20 C -0.234 4.234 21 H 0.083 0.917 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.978 3.022 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.127 3.873 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.415 0.585 33 H 0.135 0.865 34 H 0.124 0.876 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.433 0.567 40 H 0.436 0.564 41 H 0.107 0.893 42 H 0.001 0.999 43 H 0.045 0.955 44 H 0.248 0.752 45 H 0.064 0.936 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -7.025 20.624 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.072 0.928 4 N -0.363 5.363 5 C 0.293 3.707 6 O -0.476 6.476 7 C -0.166 4.166 8 C -0.152 4.152 9 C -0.019 4.019 10 N -0.224 5.224 11 C 0.104 3.896 12 O -0.240 6.240 13 N -0.189 5.189 14 N -0.190 5.190 15 C 0.108 3.892 16 O -0.237 6.237 17 C -0.126 4.126 18 C 0.044 3.956 19 N -0.372 5.372 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.223 1.223 27 H -0.216 1.216 28 C 0.002 3.998 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.252 0.748 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.296 0.704 40 H 0.299 0.701 41 H 0.126 0.874 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.082 0.918 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.675 -5.261 21.615 23.878 hybrid contribution 0.931 -0.796 -2.340 2.641 sum -7.744 -6.057 19.275 21.638 Atomic orbital electron populations 1.22033 0.93631 1.03085 1.01947 1.20746 0.94832 0.95649 0.83460 0.92838 1.46015 1.66532 1.14771 1.08982 1.21380 0.76600 0.86950 0.85768 1.90704 1.52398 1.18484 1.85974 1.21584 1.05890 0.99375 0.89773 1.21549 1.02086 0.98357 0.93169 1.22271 1.06727 0.90661 0.82265 1.47218 1.10640 1.36989 1.27581 1.21383 0.83138 0.91940 0.93116 1.84898 1.21431 1.63774 1.53882 1.78248 1.04282 1.21741 1.14622 1.78230 1.02674 1.16389 1.21747 1.21340 0.83572 0.95203 0.89046 1.84968 1.18305 1.46165 1.74308 1.23423 0.96072 1.00590 0.92540 1.22176 0.94100 0.96401 0.82963 1.46469 1.05915 1.82791 1.02060 1.19478 0.91963 1.40376 0.84453 0.89913 1.25621 0.96752 1.02998 1.00786 1.69998 1.05825 1.56772 1.27640 0.85022 0.78184 0.76848 0.79345 1.18993 1.22263 1.21553 1.22693 0.87687 0.97402 0.92046 0.90507 0.93342 0.91316 0.74802 0.84737 0.85759 0.92611 0.92366 0.85067 0.85890 0.70438 0.70097 0.87449 0.98144 0.93660 0.94282 0.91821 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.31 71.98 0.67 -2.67 16 2 C 0.16 4.32 2.38 44.99 0.11 4.42 16 3 H 0.05 1.84 7.42 -2.38 -0.02 1.82 16 4 N -0.71 -14.89 5.08 -442.52 -2.25 -17.13 16 5 C 0.50 10.91 7.79 87.66 0.68 11.59 16 6 O -0.59 -18.97 15.65 -3.04 -0.05 -19.02 16 7 C -0.13 -1.20 5.70 29.85 0.17 -1.03 16 8 C -0.11 -1.35 4.83 30.59 0.15 -1.20 16 9 C 0.10 0.64 6.01 86.38 0.52 1.16 16 10 N -0.50 -7.10 2.76 -755.17 -2.08 -9.18 16 11 C 0.42 7.69 9.15 179.72 1.65 9.33 16 12 O -0.44 -5.70 13.57 -89.46 -1.21 -6.91 16 13 N -0.34 -8.88 12.72 -173.65 -2.21 -11.09 16 14 N -0.35 -8.70 12.72 -173.66 -2.21 -10.91 16 15 C 0.42 7.22 9.15 179.71 1.65 8.87 16 16 O -0.43 -4.40 13.58 -89.39 -1.21 -5.62 16 17 C -0.11 -3.43 3.47 -10.13 -0.04 -3.46 16 18 C 0.17 7.67 7.08 86.44 0.61 8.28 16 19 N -0.65 -32.38 3.70 -716.13 -2.65 -35.04 16 20 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 21 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 23 N -0.95 -56.58 11.39 21.65 0.25 -56.34 16 24 Si 0.98 45.12 29.55 68.60 2.03 47.15 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 28 C 0.13 4.77 7.64 86.48 0.66 5.43 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.53 7.52 -2.39 -0.02 1.51 16 32 H 0.42 6.19 8.60 -92.71 -0.80 5.39 16 33 H 0.13 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.90 8.10 -2.39 -0.02 0.89 16 36 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 37 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.43 1.98 9.06 -74.06 -0.67 1.30 16 40 H 0.44 -0.88 9.06 -74.05 -0.67 -1.55 16 41 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.00 0.04 7.99 -2.39 -0.02 0.02 16 43 H 0.04 2.27 7.17 -2.38 -0.02 2.25 16 44 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -89.65 393.14 -4.51 -94.16 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -1.10 Total: 4.73 kcal Atomic # 6 Polarization: 17.02 SS G_CDS: 8.19 Total: 25.21 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -11.15 Total: -139.69 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -2.48 Total: -31.55 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -89.65 -4.51 -94.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330022059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.925 kcal (2) G-P(sol) polarization free energy of solvation -89.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds