Wall clock time and date at job start Tue Mar 31 2020 22:51:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08998 * 109.46598 * 2 1
4 4 N 1.46497 * 109.46957 * 120.00199 * 2 1 3
5 5 C 1.34782 * 119.99647 * 274.99599 * 4 2 1
6 6 O 1.21278 * 120.00320 * 0.02562 * 5 4 2
7 7 C 1.50708 * 119.99475 * 180.02562 * 5 4 2
8 8 H 1.08995 * 110.49127 * 317.30231 * 7 5 4
9 9 C 1.54110 * 110.54593 * 80.00584 * 7 5 4
10 10 N 1.47055 * 103.85918 * 118.59038 * 9 7 5
11 11 C 1.33946 * 109.18136 * 0.02562 * 10 9 7
12 12 O 1.21583 * 123.03987 * 179.97438 * 11 10 9
13 13 N 1.33950 * 113.91632 * 359.97438 * 11 10 9
14 14 C 1.52998 * 109.47102 * 240.00124 * 2 1 3
15 15 C 1.53516 * 114.17084 * 64.99703 * 14 2 1
16 16 N 1.47473 * 87.93262 * 220.13629 * 15 14 2
17 17 C 1.46902 * 110.99654 * 138.70265 * 16 15 14
18 18 C 1.50702 * 109.47027 * 170.00034 * 17 16 15
19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16
20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16
21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17
22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18
23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18
24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20
25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20
26 26 H 1.48501 * 109.47483 * 89.99599 * 25 23 21
27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21
28 28 H 1.48507 * 109.46904 * 329.99936 * 25 23 21
29 29 C 1.47474 * 87.83753 * 27.01424 * 16 15 14
30 30 H 1.08999 * 109.46908 * 300.00203 * 1 2 3
31 31 H 1.09001 * 109.46756 * 59.99772 * 1 2 3
32 32 H 1.08998 * 109.46598 * 179.97438 * 1 2 3
33 33 H 0.97002 * 119.99884 * 95.00505 * 4 2 1
34 34 H 1.09001 * 110.54517 * 237.18919 * 9 7 5
35 35 H 1.08996 * 110.54915 * 359.97438 * 9 7 5
36 36 H 0.97000 * 125.40399 * 179.97438 * 10 9 7
37 37 H 0.97005 * 125.40487 * 180.02562 * 13 11 10
38 38 H 1.08999 * 113.25595 * 197.94609 * 14 2 1
39 39 H 1.09002 * 113.47137 * 105.37127 * 15 14 2
40 40 H 1.08996 * 113.47886 * 334.91215 * 15 14 2
41 41 H 1.09004 * 109.47131 * 50.00278 * 17 16 15
42 42 H 1.08994 * 109.47471 * 290.00028 * 17 16 15
43 43 H 0.97000 * 120.00317 * 0.28382 * 20 18 17
44 44 H 0.97005 * 120.00014 * 180.02562 * 24 23 21
45 45 H 1.09001 * 113.48384 * 87.75243 * 29 16 15
46 46 H 1.09002 * 113.47897 * 218.22515 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1471 -0.0182 2.3571
6 8 1.8583 1.1584 2.4117
7 6 2.6500 -0.7286 3.5875
8 1 2.1889 -1.7123 3.6753
9 6 4.1857 -0.8523 3.5509
10 7 4.6277 -0.1042 4.7373
11 6 3.5553 0.3826 5.3754
12 8 3.6327 1.0432 6.3931
13 7 2.3898 0.0756 4.7908
14 6 2.0401 -0.7212 -1.2492
15 6 1.6915 -0.0169 -2.5680
16 7 1.4183 -1.3467 -3.1441
17 6 0.2159 -1.3181 -3.9875
18 6 0.1055 -2.6138 -4.7490
19 8 0.9455 -3.4765 -4.6032
20 7 -0.9300 -2.8165 -5.5876
21 6 -1.0335 -3.9975 -6.2762
22 1 -0.2855 -4.7656 -6.1462
23 6 -2.1007 -4.2063 -7.1411
24 7 -2.2001 -5.3386 -7.8006
25 14 -3.3941 -2.8775 -7.3664
26 1 -2.9917 -1.9782 -8.4775
27 1 -4.7000 -3.5072 -7.6875
28 1 -3.5188 -2.0905 -6.1131
29 6 1.0968 -1.8093 -1.7812
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 2.2491 -1.6318 1.1525
34 1 4.4871 -1.8973 3.6231
35 1 4.5844 -0.4003 2.6427
36 1 5.5494 0.0168 5.0141
37 1 1.5135 0.3418 5.1103
38 1 3.0817 -1.0325 -1.1713
39 1 2.5405 0.4893 -3.0275
40 1 0.8076 0.6174 -2.5011
41 1 0.2850 -0.4881 -4.6908
42 1 -0.6656 -1.1896 -3.3594
43 1 -1.6020 -2.1268 -5.7041
44 1 -2.9450 -5.4841 -8.4048
45 1 0.0542 -1.6535 -1.5042
46 1 1.4418 -2.8223 -1.5737
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001330038059.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:51:39
Heat of formation + Delta-G solvation = -29.857324 kcal
Electronic energy + Delta-G solvation = -28996.703788 eV
Core-core repulsion = 24730.792043 eV
Total energy + Delta-G solvation = -4265.911745 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.82308 -40.85705 -39.51510 -38.05553 -36.68429 -35.62159 -33.97049 -33.49737
-32.13550 -31.66627 -29.95823 -29.09737 -26.28114 -26.01948 -24.93436 -23.95760
-22.30534 -22.20631 -20.96139 -19.47199 -19.39529 -18.57652 -18.30386 -17.97983
-16.91620 -16.63962 -16.31565 -16.12799 -15.65414 -15.47590 -15.31839 -14.91713
-14.84497 -14.73085 -14.46083 -14.22435 -13.58237 -13.56765 -13.40585 -13.22379
-13.04122 -12.81694 -12.66799 -12.39401 -12.19622 -11.91735 -11.63569 -11.35043
-11.20692 -10.85212 -10.76701 -10.63444 -10.61860 -10.52764 -10.00366 -9.88741
-9.59268 -9.58951 -9.38419 -8.92079 -8.36956 -8.20366 -6.33608 -3.85116
1.93155 2.22606 2.48081 2.82368 2.98696 3.03795 3.12199 3.47138
3.65529 3.70275 3.82035 3.99059 4.07327 4.17141 4.23987 4.45521
4.59930 4.64815 4.75644 4.83977 4.93793 5.00395 5.08093 5.10147
5.22543 5.32061 5.36224 5.45149 5.50481 5.51214 5.63997 5.74056
5.86530 5.89181 5.97191 6.09644 6.36856 6.49461 6.64041 6.85085
6.96852 7.01775 7.55486 7.66091 8.11574 8.15530 8.57853 8.92966
9.39938 9.81493 10.79586
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.030343 B = 0.001784 C = 0.001761
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 922.565429 B =15693.447363 C =15899.887651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.154 3.846
3 H 0.093 0.907
4 N -0.717 5.717
5 C 0.502 3.498
6 O -0.521 6.521
7 C 0.102 3.898
8 H 0.119 0.881
9 C 0.104 3.896
10 N -0.739 5.739
11 C 0.706 3.294
12 O -0.583 6.583
13 N -0.714 5.714
14 C -0.128 4.128
15 C 0.003 3.997
16 N -0.438 5.438
17 C 0.006 3.994
18 C 0.455 3.545
19 O -0.557 6.557
20 N -0.594 5.594
21 C -0.304 4.304
22 H 0.119 0.881
23 C 0.041 3.959
24 N -0.882 5.882
25 Si 0.880 3.120
26 H -0.271 1.271
27 H -0.277 1.277
28 H -0.270 1.270
29 C 0.000 4.000
30 H 0.061 0.939
31 H 0.068 0.932
32 H 0.067 0.933
33 H 0.405 0.595
34 H 0.098 0.902
35 H 0.088 0.912
36 H 0.433 0.567
37 H 0.435 0.565
38 H 0.110 0.890
39 H 0.088 0.912
40 H 0.071 0.929
41 H 0.089 0.911
42 H 0.060 0.940
43 H 0.369 0.631
44 H 0.273 0.727
45 H 0.078 0.922
46 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.328 10.609 20.852 24.833
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.049 3.951
3 H 0.111 0.889
4 N -0.369 5.369
5 C 0.285 3.715
6 O -0.395 6.395
7 C -0.009 4.009
8 H 0.137 0.863
9 C -0.022 4.022
10 N -0.403 5.403
11 C 0.404 3.596
12 O -0.460 6.460
13 N -0.377 5.377
14 C -0.147 4.147
15 C -0.126 4.126
16 N -0.159 5.159
17 C -0.127 4.127
18 C 0.240 3.760
19 O -0.438 6.438
20 N -0.234 5.234
21 C -0.433 4.433
22 H 0.137 0.863
23 C -0.162 4.162
24 N -0.522 5.522
25 Si 0.706 3.294
26 H -0.196 1.196
27 H -0.202 1.202
28 H -0.196 1.196
29 C -0.128 4.128
30 H 0.080 0.920
31 H 0.087 0.913
32 H 0.086 0.914
33 H 0.239 0.761
34 H 0.116 0.884
35 H 0.106 0.894
36 H 0.275 0.725
37 H 0.277 0.723
38 H 0.128 0.872
39 H 0.106 0.894
40 H 0.089 0.911
41 H 0.107 0.893
42 H 0.078 0.922
43 H 0.202 0.798
44 H 0.084 0.916
45 H 0.096 0.904
46 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 9.087 10.719 20.896 25.182
hybrid contribution -1.890 0.942 -0.084 2.113
sum 7.197 11.661 20.812 24.918
Atomic orbital electron populations
1.22358 0.95047 1.02733 1.02716 1.20896 0.94181 0.97301 0.82677
0.88932 1.46069 1.67019 1.14344 1.09478 1.20760 0.78442 0.87693
0.84593 1.90772 1.48762 1.15537 1.84475 1.21875 0.96938 0.96419
0.85637 0.86339 1.22270 0.90588 0.98855 0.90485 1.45055 1.08744
1.58202 1.28251 1.15863 0.81402 0.79419 0.82890 1.91017 1.85680
1.44067 1.25243 1.44822 1.08662 1.58077 1.26118 1.23082 1.01192
0.97765 0.92668 1.23901 1.01717 0.93650 0.93370 1.68814 1.29344
1.10184 1.07605 1.22548 0.92874 0.98961 0.98286 1.19559 0.83864
0.88828 0.83720 1.90562 1.41238 1.45283 1.66700 1.42228 1.23207
1.17265 1.40676 1.19418 1.10651 0.93397 1.19845 0.86319 1.25031
0.97717 0.96784 0.96654 1.69621 1.31622 1.23467 1.27483 0.86675
0.82106 0.81857 0.78732 1.19618 1.20190 1.19610 1.24164 0.98795
1.00093 0.89789 0.92010 0.91328 0.91419 0.76079 0.88366 0.89364
0.72453 0.72267 0.87208 0.89363 0.91101 0.89267 0.92207 0.79809
0.91623 0.90365 0.89343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.26 8.24 37.16 0.31 -0.95 16
2 C 0.15 1.07 2.76 -67.93 -0.19 0.88 16
3 H 0.09 0.78 7.58 -51.93 -0.39 0.38 16
4 N -0.72 -3.65 5.08 -53.80 -0.27 -3.92 16
5 C 0.50 3.43 6.92 -10.98 -0.08 3.35 16
6 O -0.52 -5.99 16.22 5.56 0.09 -5.90 16
7 C 0.10 0.44 4.17 -68.20 -0.28 0.16 16
8 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16
9 C 0.10 0.32 7.70 -3.16 -0.02 0.29 16
10 N -0.74 -4.40 6.37 -64.70 -0.41 -4.81 16
11 C 0.71 6.98 8.92 -88.40 -0.79 6.19 16
12 O -0.58 -8.45 18.05 5.29 0.10 -8.35 16
13 N -0.71 -5.27 5.60 -59.33 -0.33 -5.61 16
14 C -0.13 -1.01 4.11 -90.09 -0.37 -1.38 16
15 C 0.00 0.03 7.11 -7.56 -0.05 -0.02 16
16 N -0.44 -6.16 5.82 -246.11 -1.43 -7.59 16
17 C 0.01 0.09 5.30 -4.97 -0.03 0.06 16
18 C 0.46 10.04 7.85 -10.98 -0.09 9.96 16
19 O -0.56 -14.72 16.01 5.55 0.09 -14.63 16
20 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16
21 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16
22 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16
23 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16
24 N -0.88 -25.44 13.96 55.50 0.77 -24.66 16
25 Si 0.88 19.00 27.74 -169.99 -4.71 14.29 16
26 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
27 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16
28 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16
29 C 0.00 0.00 6.85 -7.56 -0.05 -0.05 16
30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.07 0.50 6.77 -51.93 -0.35 0.15 16
32 H 0.07 0.49 6.32 -51.93 -0.33 0.16 16
33 H 0.40 1.04 8.60 -40.82 -0.35 0.69 16
34 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16
35 H 0.09 0.24 7.72 -51.93 -0.40 -0.16 16
36 H 0.43 1.87 8.96 -40.82 -0.37 1.51 16
37 H 0.43 3.01 8.96 -40.82 -0.37 2.64 16
38 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16
40 H 0.07 0.59 6.52 -51.93 -0.34 0.25 16
41 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16
42 H 0.06 0.78 7.30 -51.93 -0.38 0.40 16
43 H 0.37 7.50 5.76 -40.82 -0.24 7.26 16
44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16
45 H 0.08 0.79 4.73 -51.93 -0.25 0.55 16
46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16
LS Contribution 378.10 15.07 5.70 5.70
Total: -1.00 -39.89 378.10 -8.63 -48.52
By element:
Atomic # 1 Polarization: 16.24 SS G_CDS: -6.27 Total: 9.97 kcal
Atomic # 6 Polarization: 12.76 SS G_CDS: -1.89 Total: 10.87 kcal
Atomic # 7 Polarization: -58.73 SS G_CDS: -1.73 Total: -60.46 kcal
Atomic # 8 Polarization: -29.16 SS G_CDS: 0.27 Total: -28.88 kcal
Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.29 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -39.89 -8.63 -48.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330038059.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.661 kcal
(2) G-P(sol) polarization free energy of solvation -39.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.226 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.857 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds