Wall clock time and date at job start Tue Mar 31 2020 22:51:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.08998 * 109.46598 * 2 1
4 4 N 1.46497 * 109.46957 * 120.00199 * 2 1 3
5 5 C 1.34782 * 119.99647 * 274.99599 * 4 2 1
6 6 O 1.21278 * 120.00320 * 0.02562 * 5 4 2
7 7 C 1.50708 * 119.99475 * 180.02562 * 5 4 2
8 8 H 1.08995 * 110.49127 * 317.30231 * 7 5 4
9 9 C 1.54110 * 110.54593 * 80.00584 * 7 5 4
10 10 N 1.47055 * 103.85918 * 118.59038 * 9 7 5
11 11 C 1.33946 * 109.18136 * 0.02562 * 10 9 7
12 12 O 1.21583 * 123.03987 * 179.97438 * 11 10 9
13 13 N 1.33950 * 113.91632 * 359.97438 * 11 10 9
14 14 C 1.52998 * 109.47102 * 240.00124 * 2 1 3
15 15 C 1.53516 * 114.17084 * 64.99703 * 14 2 1
16 16 N 1.47473 * 87.93262 * 220.13629 * 15 14 2
17 17 C 1.46902 * 110.99654 * 138.70265 * 16 15 14
18 18 C 1.50702 * 109.47027 * 170.00034 * 17 16 15
19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16
20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16
21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17
22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18
23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18
24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20
25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20
26 26 H 1.48501 * 109.47483 * 89.99599 * 25 23 21
27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21
28 28 H 1.48507 * 109.46904 * 329.99936 * 25 23 21
29 29 C 1.47474 * 87.83753 * 27.01424 * 16 15 14
30 30 H 1.08999 * 109.46908 * 300.00203 * 1 2 3
31 31 H 1.09001 * 109.46756 * 59.99772 * 1 2 3
32 32 H 1.08998 * 109.46598 * 179.97438 * 1 2 3
33 33 H 0.97002 * 119.99884 * 95.00505 * 4 2 1
34 34 H 1.09001 * 110.54517 * 237.18919 * 9 7 5
35 35 H 1.08996 * 110.54915 * 359.97438 * 9 7 5
36 36 H 0.97000 * 125.40399 * 179.97438 * 10 9 7
37 37 H 0.97005 * 125.40487 * 180.02562 * 13 11 10
38 38 H 1.08999 * 113.25595 * 197.94609 * 14 2 1
39 39 H 1.09002 * 113.47137 * 105.37127 * 15 14 2
40 40 H 1.08996 * 113.47886 * 334.91215 * 15 14 2
41 41 H 1.09004 * 109.47131 * 50.00278 * 17 16 15
42 42 H 1.08994 * 109.47471 * 290.00028 * 17 16 15
43 43 H 0.97000 * 120.00317 * 0.28382 * 20 18 17
44 44 H 0.97005 * 120.00014 * 180.02562 * 24 23 21
45 45 H 1.09001 * 113.48384 * 87.75243 * 29 16 15
46 46 H 1.09002 * 113.47897 * 218.22515 * 29 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1471 -0.0182 2.3571
6 8 1.8583 1.1584 2.4117
7 6 2.6500 -0.7286 3.5875
8 1 2.1889 -1.7123 3.6753
9 6 4.1857 -0.8523 3.5509
10 7 4.6277 -0.1042 4.7373
11 6 3.5553 0.3826 5.3754
12 8 3.6327 1.0432 6.3931
13 7 2.3898 0.0756 4.7908
14 6 2.0401 -0.7212 -1.2492
15 6 1.6915 -0.0169 -2.5680
16 7 1.4183 -1.3467 -3.1441
17 6 0.2159 -1.3181 -3.9875
18 6 0.1055 -2.6138 -4.7490
19 8 0.9455 -3.4765 -4.6032
20 7 -0.9300 -2.8165 -5.5876
21 6 -1.0335 -3.9975 -6.2762
22 1 -0.2855 -4.7656 -6.1462
23 6 -2.1007 -4.2063 -7.1411
24 7 -2.2001 -5.3386 -7.8006
25 14 -3.3941 -2.8775 -7.3664
26 1 -2.9917 -1.9782 -8.4775
27 1 -4.7000 -3.5072 -7.6875
28 1 -3.5188 -2.0905 -6.1131
29 6 1.0968 -1.8093 -1.7812
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3632 -1.0277 -0.0005
33 1 2.2491 -1.6318 1.1525
34 1 4.4871 -1.8973 3.6231
35 1 4.5844 -0.4003 2.6427
36 1 5.5494 0.0168 5.0141
37 1 1.5135 0.3418 5.1103
38 1 3.0817 -1.0325 -1.1713
39 1 2.5405 0.4893 -3.0275
40 1 0.8076 0.6174 -2.5011
41 1 0.2850 -0.4881 -4.6908
42 1 -0.6656 -1.1896 -3.3594
43 1 -1.6020 -2.1268 -5.7041
44 1 -2.9450 -5.4841 -8.4048
45 1 0.0542 -1.6535 -1.5042
46 1 1.4418 -2.8223 -1.5737
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001330038059.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:51:38
Heat of formation + Delta-G solvation = -69.357348 kcal
Electronic energy + Delta-G solvation = -28998.416638 eV
Core-core repulsion = 24730.792043 eV
Total energy + Delta-G solvation = -4267.624595 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.37428 -41.69504 -40.30330 -39.68987 -37.41185 -36.34566 -35.90346 -33.99702
-33.74554 -32.84069 -30.86792 -29.67750 -27.52047 -26.91206 -25.88394 -24.89907
-23.13332 -22.81057 -21.49691 -21.24655 -20.27322 -20.09186 -19.01526 -18.57977
-17.74995 -17.55574 -17.24865 -16.95754 -16.66873 -16.51995 -16.28130 -16.10164
-15.86687 -15.40932 -15.15641 -15.12155 -14.87774 -14.62599 -14.55068 -14.22311
-13.94526 -13.82415 -13.66354 -13.26524 -13.15321 -13.04739 -12.72571 -12.53972
-12.40203 -12.02600 -11.96127 -11.68604 -11.59152 -11.48701 -11.36605 -11.24156
-10.55011 -10.41549 -10.22559 -10.14260 -9.82438 -9.63256 -8.39907 -6.00545
1.30191 1.36345 1.42604 1.44869 1.70242 1.95920 1.99307 2.20750
2.23788 2.71067 3.06279 3.15779 3.28705 3.33016 3.41791 3.61169
3.78070 4.01330 4.06607 4.11083 4.24978 4.31881 4.36590 4.41529
4.46414 4.47161 4.63658 4.67870 4.73326 4.80348 4.81221 4.93832
5.03017 5.19098 5.35882 5.44915 5.52401 5.55578 5.90468 5.94260
6.10147 6.20280 6.28961 6.55565 6.61934 6.90824 7.20041 7.42584
7.51404 8.00816 8.77800
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.030343 B = 0.001784 C = 0.001761
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 922.565429 B =15693.447363 C =15899.887651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.162 3.838
3 H 0.083 0.917
4 N -0.702 5.702
5 C 0.504 3.496
6 O -0.571 6.571
7 C 0.104 3.896
8 H 0.160 0.840
9 C 0.103 3.897
10 N -0.731 5.731
11 C 0.693 3.307
12 O -0.641 6.641
13 N -0.715 5.715
14 C -0.101 4.101
15 C 0.007 3.993
16 N -0.480 5.480
17 C 0.018 3.982
18 C 0.453 3.547
19 O -0.609 6.609
20 N -0.595 5.595
21 C -0.327 4.327
22 H 0.054 0.946
23 C -0.016 4.016
24 N -0.936 5.936
25 Si 0.964 3.036
26 H -0.259 1.259
27 H -0.276 1.276
28 H -0.230 1.230
29 C -0.003 4.003
30 H 0.049 0.951
31 H 0.073 0.927
32 H 0.071 0.929
33 H 0.420 0.580
34 H 0.139 0.861
35 H 0.095 0.905
36 H 0.440 0.560
37 H 0.434 0.566
38 H 0.116 0.884
39 H 0.093 0.907
40 H 0.091 0.909
41 H 0.115 0.885
42 H 0.092 0.908
43 H 0.389 0.611
44 H 0.278 0.722
45 H 0.090 0.910
46 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.441 12.437 21.318 25.777
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.057 3.943
3 H 0.101 0.899
4 N -0.355 5.355
5 C 0.289 3.711
6 O -0.450 6.450
7 C -0.006 4.006
8 H 0.177 0.823
9 C -0.021 4.021
10 N -0.394 5.394
11 C 0.392 3.608
12 O -0.523 6.523
13 N -0.376 5.376
14 C -0.120 4.120
15 C -0.122 4.122
16 N -0.203 5.203
17 C -0.113 4.113
18 C 0.241 3.759
19 O -0.493 6.493
20 N -0.237 5.237
21 C -0.456 4.456
22 H 0.072 0.928
23 C -0.215 4.215
24 N -0.576 5.576
25 Si 0.785 3.215
26 H -0.183 1.183
27 H -0.201 1.201
28 H -0.153 1.153
29 C -0.132 4.132
30 H 0.068 0.932
31 H 0.092 0.908
32 H 0.089 0.911
33 H 0.258 0.742
34 H 0.157 0.843
35 H 0.113 0.887
36 H 0.283 0.717
37 H 0.276 0.724
38 H 0.135 0.865
39 H 0.111 0.889
40 H 0.109 0.891
41 H 0.133 0.867
42 H 0.110 0.890
43 H 0.224 0.776
44 H 0.088 0.912
45 H 0.108 0.892
46 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 8.229 12.507 21.333 26.062
hybrid contribution -1.489 0.254 -0.260 1.533
sum 6.740 12.761 21.073 25.541
Atomic orbital electron populations
1.22329 0.95053 1.02802 1.02428 1.20705 0.94048 0.96762 0.82797
0.89899 1.45924 1.66041 1.14972 1.08560 1.21169 0.77476 0.87049
0.85389 1.90763 1.51132 1.17822 1.85248 1.22193 0.98221 0.97054
0.83090 0.82276 1.22611 0.89367 1.00780 0.89390 1.45072 1.08277
1.57529 1.28480 1.16213 0.82713 0.79285 0.82633 1.90961 1.86669
1.46743 1.27944 1.44869 1.08022 1.57935 1.26736 1.22873 1.00834
0.95913 0.92398 1.23988 1.02747 0.92080 0.93398 1.68764 1.29061
1.13386 1.09055 1.22479 0.95134 0.94906 0.98826 1.20945 0.82020
0.90516 0.82467 1.90535 1.42893 1.47849 1.67974 1.42075 1.24497
1.16269 1.40890 1.18991 1.10227 0.94323 1.22067 0.92760 1.26106
1.00195 0.99873 0.95285 1.69807 1.32954 1.26462 1.28420 0.85372
0.77363 0.78189 0.80626 1.18322 1.20142 1.15318 1.24240 1.00169
1.00022 0.88743 0.93196 0.90800 0.91060 0.74249 0.84307 0.88674
0.71717 0.72410 0.86546 0.88894 0.89110 0.86737 0.88977 0.77592
0.91221 0.89175 0.91156
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.00 8.24 71.98 0.59 -1.41 16
2 C 0.16 1.79 2.76 44.99 0.12 1.91 16
3 H 0.08 1.18 7.58 -2.39 -0.02 1.17 16
4 N -0.70 -5.03 5.08 -442.52 -2.25 -7.28 16
5 C 0.50 5.73 6.92 87.66 0.61 6.34 16
6 O -0.57 -12.53 16.22 -3.02 -0.05 -12.58 16
7 C 0.10 0.60 4.17 44.52 0.19 0.79 16
8 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16
9 C 0.10 0.28 7.70 86.65 0.67 0.95 16
10 N -0.73 -7.54 6.37 -477.33 -3.04 -10.58 16
11 C 0.69 13.48 8.92 179.57 1.60 15.08 16
12 O -0.64 -19.30 18.05 -3.98 -0.07 -19.37 16
13 N -0.71 -9.82 5.60 -460.33 -2.58 -12.40 16
14 C -0.10 -1.28 4.11 -10.45 -0.04 -1.33 16
15 C 0.01 0.11 7.11 83.57 0.59 0.70 16
16 N -0.48 -12.37 5.82 -932.56 -5.43 -17.80 16
17 C 0.02 0.51 5.30 85.56 0.45 0.96 16
18 C 0.45 19.77 7.85 87.66 0.69 20.46 16
19 O -0.61 -33.18 16.01 -3.07 -0.05 -33.23 16
20 N -0.59 -27.29 5.09 -306.98 -1.56 -28.86 16
21 C -0.33 -18.85 10.16 84.04 0.85 -18.00 16
22 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16
23 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16
24 N -0.94 -55.80 13.96 21.66 0.30 -55.50 16
25 Si 0.96 37.90 27.74 68.60 1.90 39.80 16
26 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16
27 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16
28 H -0.23 -7.47 6.52 99.48 0.65 -6.82 16
29 C 0.00 -0.06 6.85 83.57 0.57 0.51 16
30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.07 0.81 6.77 -2.39 -0.02 0.79 16
32 H 0.07 0.80 6.32 -2.39 -0.02 0.78 16
33 H 0.42 0.59 8.60 -92.71 -0.80 -0.20 16
34 H 0.14 -0.64 8.14 -2.39 -0.02 -0.66 16
35 H 0.10 0.20 7.72 -2.39 -0.02 0.18 16
36 H 0.44 3.25 8.96 -92.71 -0.83 2.42 16
37 H 0.43 5.89 8.96 -92.70 -0.83 5.06 16
38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.09 1.10 6.52 -2.39 -0.02 1.09 16
41 H 0.11 2.63 8.08 -2.38 -0.02 2.61 16
42 H 0.09 1.99 7.30 -2.39 -0.02 1.97 16
43 H 0.39 14.61 5.76 -92.71 -0.53 14.07 16
44 H 0.28 15.17 8.31 -92.70 -0.77 14.40 16
45 H 0.09 1.53 4.73 -2.39 -0.01 1.52 16
46 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
Total: -1.00 -96.08 378.10 -7.43 -103.51
By element:
Atomic # 1 Polarization: 29.72 SS G_CDS: -1.97 Total: 27.75 kcal
Atomic # 6 Polarization: 19.18 SS G_CDS: 7.36 Total: 26.54 kcal
Atomic # 7 Polarization: -117.86 SS G_CDS: -14.56 Total: -132.42 kcal
Atomic # 8 Polarization: -65.01 SS G_CDS: -0.17 Total: -65.18 kcal
Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.80 kcal
Total: -96.08 -7.43 -103.51 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330038059.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.153 kcal
(2) G-P(sol) polarization free energy of solvation -96.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.357 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds