Wall clock time and date at job start Tue Mar 31 2020 22:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 N 1.46502 * 109.46903 * 239.99647 * 2 1 3 5 5 C 1.34774 * 119.99960 * 85.00215 * 4 2 1 6 6 O 1.21282 * 119.99880 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99780 * 179.97438 * 5 4 2 8 8 H 1.09001 * 110.49178 * 319.29558 * 7 5 4 9 9 C 1.54105 * 110.55033 * 82.00103 * 7 5 4 10 10 N 1.47057 * 103.86318 * 118.73644 * 9 7 5 11 11 C 1.33939 * 109.17927 * 359.97438 * 10 9 7 12 12 O 1.21591 * 123.04379 * 179.97438 * 11 10 9 13 13 N 1.33947 * 113.91934 * 0.02562 * 11 10 9 14 14 C 1.53005 * 109.46763 * 119.99683 * 2 1 3 15 15 C 1.53931 * 113.73208 * 281.72579 * 14 2 1 16 16 N 1.47961 * 86.17853 * 221.92499 * 15 14 2 17 17 C 1.46905 * 111.00287 * 137.58749 * 16 15 14 18 18 C 1.50704 * 109.47014 * 70.63446 * 17 16 15 19 19 O 1.21289 * 120.00330 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99649 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00084 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99656 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99914 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99720 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00443 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47092 * 89.99922 * 25 23 21 27 27 H 1.48503 * 109.46983 * 210.00230 * 25 23 21 28 28 H 1.48497 * 109.46800 * 330.00180 * 25 23 21 29 29 C 1.47956 * 90.76500 * 24.69263 * 16 15 14 30 30 H 1.08995 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47077 * 300.04040 * 1 2 3 32 32 H 1.08998 * 109.47004 * 60.03554 * 1 2 3 33 33 H 0.96999 * 119.99661 * 265.00246 * 4 2 1 34 34 H 1.09006 * 110.54683 * 237.33161 * 9 7 5 35 35 H 1.08998 * 110.54923 * 0.14269 * 9 7 5 36 36 H 0.97003 * 125.40736 * 179.97438 * 10 9 7 37 37 H 0.97002 * 125.41282 * 180.02562 * 13 11 10 38 38 H 1.09001 * 112.93817 * 53.43792 * 14 2 1 39 39 H 1.08998 * 113.76532 * 336.24156 * 15 14 2 40 40 H 1.09002 * 113.76011 * 107.60833 * 15 14 2 41 41 H 1.08998 * 109.47357 * 190.64206 * 17 16 15 42 42 H 1.09006 * 109.46829 * 310.63925 * 17 16 15 43 43 H 0.97005 * 119.99947 * 0.02562 * 20 18 17 44 44 H 0.96997 * 119.99793 * 180.02562 * 24 23 21 45 45 H 1.08997 * 113.75972 * 220.99378 * 29 16 15 46 46 H 1.09000 * 113.76147 * 89.62839 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 1 3.4662 -1.4041 -3.3312 9 6 1.5050 -1.4997 -4.2728 10 7 1.4133 -0.8835 -5.6049 11 6 2.3341 0.0839 -5.7065 12 8 2.4792 0.7586 -6.7076 13 7 3.0814 0.2402 -4.6059 14 6 2.0400 -0.7212 1.2493 15 6 1.9764 0.1340 2.5277 16 7 3.3109 -0.4201 2.8459 17 6 4.2041 0.6237 3.3663 18 6 3.7543 1.0273 4.7469 19 8 2.7854 0.4971 5.2483 20 7 4.4287 1.9773 5.4244 21 6 4.0199 2.3441 6.6807 22 1 3.1576 1.8714 7.1274 23 6 4.7149 3.3239 7.3789 24 7 4.3233 3.6751 8.5833 25 14 6.2066 4.1409 6.6065 26 1 5.7752 5.3406 5.8451 27 1 7.1565 4.5468 7.6734 28 1 6.8740 3.1847 5.6871 29 6 3.5701 -0.6729 1.4113 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5145 0.8897 32 1 -0.3633 0.5133 -0.8903 33 1 2.2490 -1.6319 -1.1525 34 1 1.7529 -2.5578 -4.3569 35 1 0.5723 -1.3666 -3.7247 36 1 0.7857 -1.1374 -6.2996 37 1 3.7937 0.8897 -4.4977 38 1 1.6178 -1.7194 1.3657 39 1 1.9804 1.2074 2.3386 40 1 1.1958 -0.1736 3.2235 41 1 5.2230 0.2396 3.4138 42 1 4.1730 1.4906 2.7062 43 1 5.2033 2.4015 5.0233 44 1 4.8082 4.3593 9.0706 45 1 4.0627 -1.6252 1.2152 46 1 4.0401 0.1645 0.8957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330038063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:45 Heat of formation + Delta-G solvation = -39.036870 kcal Electronic energy + Delta-G solvation = -29156.985647 eV Core-core repulsion = 24890.675847 eV Total energy + Delta-G solvation = -4266.309800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81524 -40.56035 -39.45550 -37.98675 -36.68196 -35.62114 -33.97696 -33.50797 -32.07558 -31.67522 -29.94485 -29.21582 -26.16076 -25.92852 -24.76958 -23.88859 -22.26701 -21.94774 -20.97333 -19.90155 -19.40728 -18.55354 -18.29699 -18.01981 -16.94455 -16.60780 -16.19929 -16.04942 -15.69082 -15.36904 -15.23939 -14.98478 -14.81902 -14.41194 -14.27648 -14.11450 -13.78222 -13.56909 -13.45829 -13.16730 -12.95409 -12.71497 -12.57270 -12.40411 -12.26464 -12.03341 -11.62860 -11.22950 -11.08404 -10.99197 -10.78140 -10.65820 -10.61993 -10.57465 -10.00119 -9.89513 -9.59505 -9.55791 -9.38892 -8.80677 -8.39724 -8.20575 -6.33696 -3.85258 1.93629 2.23651 2.48157 2.82392 3.00326 3.04634 3.13155 3.46601 3.64524 3.68968 3.83111 3.99244 4.07767 4.20550 4.26155 4.42622 4.61126 4.65538 4.80144 4.88351 5.01938 5.05770 5.10583 5.17516 5.29360 5.36167 5.41635 5.50784 5.54890 5.60187 5.66623 5.83914 5.90618 5.95710 6.05781 6.18849 6.46136 6.48890 6.63410 6.84914 6.99217 7.03205 7.54898 7.68575 8.10915 8.15168 8.56704 8.92063 9.39360 9.79332 10.79333 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.001991 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.199167 B =14062.540587 C =14824.058014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.089 0.911 4 N -0.716 5.716 5 C 0.500 3.500 6 O -0.518 6.518 7 C 0.103 3.897 8 H 0.118 0.882 9 C 0.105 3.895 10 N -0.739 5.739 11 C 0.706 3.294 12 O -0.582 6.582 13 N -0.714 5.714 14 C -0.129 4.129 15 C 0.032 3.968 16 N -0.452 5.452 17 C 0.007 3.993 18 C 0.452 3.548 19 O -0.561 6.561 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.402 0.598 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.433 0.567 37 H 0.435 0.565 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.088 0.912 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.821 -13.988 -25.838 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.369 5.369 5 C 0.283 3.717 6 O -0.393 6.393 7 C -0.008 4.008 8 H 0.135 0.865 9 C -0.021 4.021 10 N -0.403 5.403 11 C 0.404 3.596 12 O -0.459 6.459 13 N -0.377 5.377 14 C -0.148 4.148 15 C -0.097 4.097 16 N -0.175 5.175 17 C -0.125 4.125 18 C 0.237 3.763 19 O -0.443 6.443 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.125 4.125 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.275 0.725 37 H 0.278 0.722 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.501 -13.508 -25.337 28.925 hybrid contribution 1.488 1.178 -0.843 2.076 sum -2.013 -12.330 -26.179 29.008 Atomic orbital electron populations 1.22139 0.94626 1.02355 1.02927 1.21117 0.94542 0.97169 0.82626 0.89268 1.46050 1.67210 1.14185 1.09412 1.20745 0.78621 0.87807 0.84493 1.90792 1.48384 1.15623 1.84469 1.21866 0.98602 0.91458 0.88894 0.86466 1.22250 0.98068 0.97871 0.83909 1.45048 1.39362 1.38872 1.17007 1.15862 0.79576 0.80677 0.83453 1.91022 1.72758 1.50472 1.31669 1.44832 1.39441 1.40370 1.13039 1.23408 0.96293 1.01170 0.93939 1.23775 0.94385 0.97381 0.94184 1.68413 1.02259 1.33266 1.13524 1.22504 0.98820 0.94657 0.96509 1.19570 0.86368 0.83195 0.87122 1.90559 1.28361 1.55625 1.69715 1.42226 1.28028 1.35899 1.16880 1.19420 1.14402 1.19554 0.89964 0.86273 1.25044 0.98204 0.97215 0.95719 1.69623 1.40369 1.31004 1.11049 0.86676 0.82964 0.80231 0.79546 1.19635 1.20119 1.19517 1.23999 0.95647 1.02088 0.90775 0.92185 0.90920 0.92276 0.76346 0.88490 0.89462 0.72480 0.72217 0.87571 0.91325 0.88282 0.89055 0.92741 0.79738 0.91592 0.89365 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.44 37.16 0.35 -0.88 16 2 C 0.15 1.15 2.29 -67.92 -0.16 0.99 16 3 H 0.09 0.92 7.48 -51.93 -0.39 0.53 16 4 N -0.72 -3.57 4.94 -53.80 -0.27 -3.84 16 5 C 0.50 3.50 6.91 -10.99 -0.08 3.43 16 6 O -0.52 -6.31 16.25 5.56 0.09 -6.22 16 7 C 0.10 0.43 4.17 -68.20 -0.28 0.15 16 8 H 0.12 0.11 8.14 -51.93 -0.42 -0.32 16 9 C 0.10 0.29 7.70 -3.16 -0.02 0.26 16 10 N -0.74 -4.30 6.37 -64.70 -0.41 -4.71 16 11 C 0.71 7.02 8.92 -88.41 -0.79 6.23 16 12 O -0.58 -8.52 18.05 5.29 0.10 -8.43 16 13 N -0.71 -5.36 5.62 -59.33 -0.33 -5.70 16 14 C -0.13 -1.09 3.36 -89.69 -0.30 -1.39 16 15 C 0.03 0.42 6.22 -2.77 -0.02 0.40 16 16 N -0.45 -6.53 5.95 -239.75 -1.43 -7.95 16 17 C 0.01 0.12 5.31 -4.97 -0.03 0.09 16 18 C 0.45 10.07 7.59 -10.98 -0.08 9.99 16 19 O -0.56 -14.69 15.13 5.55 0.08 -14.61 16 20 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 21 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 22 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 25 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 26 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 29 C 0.00 0.04 7.41 -2.77 -0.02 0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 0.73 8.60 -40.82 -0.35 0.38 16 34 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 35 H 0.09 0.22 7.72 -51.93 -0.40 -0.18 16 36 H 0.43 1.79 8.96 -40.82 -0.37 1.43 16 37 H 0.44 3.13 8.96 -40.82 -0.37 2.77 16 38 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.93 7.67 -51.93 -0.40 0.53 16 40 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 0.77 7.69 -51.93 -0.40 0.37 16 43 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 0.61 7.75 -51.93 -0.40 0.21 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -39.78 384.26 -8.71 -48.49 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.66 Total: 9.82 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: -1.67 Total: 11.61 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.72 Total: -61.02 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: 0.27 Total: -29.26 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.78 -8.71 -48.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330038063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.449 kcal (2) G-P(sol) polarization free energy of solvation -39.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds