Wall clock time and date at job start Tue Mar 31 2020 22:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 N 1.46502 * 109.46903 * 239.99647 * 2 1 3 5 5 C 1.34774 * 119.99960 * 85.00215 * 4 2 1 6 6 O 1.21282 * 119.99880 * 359.97438 * 5 4 2 7 7 C 1.50695 * 119.99780 * 179.97438 * 5 4 2 8 8 H 1.09001 * 110.49178 * 319.29558 * 7 5 4 9 9 C 1.54105 * 110.55033 * 82.00103 * 7 5 4 10 10 N 1.47057 * 103.86318 * 118.73644 * 9 7 5 11 11 C 1.33939 * 109.17927 * 359.97438 * 10 9 7 12 12 O 1.21591 * 123.04379 * 179.97438 * 11 10 9 13 13 N 1.33947 * 113.91934 * 0.02562 * 11 10 9 14 14 C 1.53005 * 109.46763 * 119.99683 * 2 1 3 15 15 C 1.53931 * 113.73208 * 281.72579 * 14 2 1 16 16 N 1.47961 * 86.17853 * 221.92499 * 15 14 2 17 17 C 1.46905 * 111.00287 * 137.58749 * 16 15 14 18 18 C 1.50704 * 109.47014 * 70.63446 * 17 16 15 19 19 O 1.21289 * 120.00330 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99649 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00084 * 180.02562 * 20 18 17 22 22 H 1.08004 * 119.99656 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99914 * 180.02562 * 21 20 18 24 24 N 1.31421 * 119.99720 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00443 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47092 * 89.99922 * 25 23 21 27 27 H 1.48503 * 109.46983 * 210.00230 * 25 23 21 28 28 H 1.48497 * 109.46800 * 330.00180 * 25 23 21 29 29 C 1.47956 * 90.76500 * 24.69263 * 16 15 14 30 30 H 1.08995 * 109.47182 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47077 * 300.04040 * 1 2 3 32 32 H 1.08998 * 109.47004 * 60.03554 * 1 2 3 33 33 H 0.96999 * 119.99661 * 265.00246 * 4 2 1 34 34 H 1.09006 * 110.54683 * 237.33161 * 9 7 5 35 35 H 1.08998 * 110.54923 * 0.14269 * 9 7 5 36 36 H 0.97003 * 125.40736 * 179.97438 * 10 9 7 37 37 H 0.97002 * 125.41282 * 180.02562 * 13 11 10 38 38 H 1.09001 * 112.93817 * 53.43792 * 14 2 1 39 39 H 1.08998 * 113.76532 * 336.24156 * 15 14 2 40 40 H 1.09002 * 113.76011 * 107.60833 * 15 14 2 41 41 H 1.08998 * 109.47357 * 190.64206 * 17 16 15 42 42 H 1.09006 * 109.46829 * 310.63925 * 17 16 15 43 43 H 0.97005 * 119.99947 * 0.02562 * 20 18 17 44 44 H 0.96997 * 119.99793 * 180.02562 * 24 23 21 45 45 H 1.08997 * 113.75972 * 220.99378 * 29 16 15 46 46 H 1.09000 * 113.76147 * 89.62839 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0184 -2.3571 6 8 1.8582 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 1 3.4662 -1.4041 -3.3312 9 6 1.5050 -1.4997 -4.2728 10 7 1.4133 -0.8835 -5.6049 11 6 2.3341 0.0839 -5.7065 12 8 2.4792 0.7586 -6.7076 13 7 3.0814 0.2402 -4.6059 14 6 2.0400 -0.7212 1.2493 15 6 1.9764 0.1340 2.5277 16 7 3.3109 -0.4201 2.8459 17 6 4.2041 0.6237 3.3663 18 6 3.7543 1.0273 4.7469 19 8 2.7854 0.4971 5.2483 20 7 4.4287 1.9773 5.4244 21 6 4.0199 2.3441 6.6807 22 1 3.1576 1.8714 7.1274 23 6 4.7149 3.3239 7.3789 24 7 4.3233 3.6751 8.5833 25 14 6.2066 4.1409 6.6065 26 1 5.7752 5.3406 5.8451 27 1 7.1565 4.5468 7.6734 28 1 6.8740 3.1847 5.6871 29 6 3.5701 -0.6729 1.4113 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5145 0.8897 32 1 -0.3633 0.5133 -0.8903 33 1 2.2490 -1.6319 -1.1525 34 1 1.7529 -2.5578 -4.3569 35 1 0.5723 -1.3666 -3.7247 36 1 0.7857 -1.1374 -6.2996 37 1 3.7937 0.8897 -4.4977 38 1 1.6178 -1.7194 1.3657 39 1 1.9804 1.2074 2.3386 40 1 1.1958 -0.1736 3.2235 41 1 5.2230 0.2396 3.4138 42 1 4.1730 1.4906 2.7062 43 1 5.2033 2.4015 5.0233 44 1 4.8082 4.3593 9.0706 45 1 4.0627 -1.6252 1.2152 46 1 4.0401 0.1645 0.8957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330038063.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:44 Heat of formation + Delta-G solvation = -78.698547 kcal Electronic energy + Delta-G solvation = -29158.705506 eV Core-core repulsion = 24890.675847 eV Total energy + Delta-G solvation = -4268.029660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.34929 -41.49213 -40.33064 -39.57373 -37.40264 -36.39626 -35.93420 -33.98678 -33.78492 -32.78622 -30.95705 -29.76231 -27.48870 -26.98717 -25.64467 -24.87781 -22.89228 -22.72901 -21.55826 -21.25614 -20.68807 -20.23590 -19.05556 -18.53559 -17.86099 -17.55202 -17.19242 -16.85866 -16.71228 -16.67300 -16.11125 -15.94255 -15.82485 -15.35680 -15.22712 -15.01426 -14.90357 -14.67060 -14.42828 -14.19366 -13.87658 -13.86178 -13.63931 -13.48032 -13.14387 -13.05239 -12.94692 -12.57609 -12.43551 -12.00959 -11.90531 -11.78314 -11.58076 -11.57216 -11.49714 -11.28591 -10.54417 -10.42377 -10.26488 -10.15693 -9.81473 -9.63773 -8.43100 -6.03857 1.27933 1.33271 1.42224 1.43212 1.71310 1.93545 1.97331 2.20602 2.20820 2.67853 3.08316 3.12528 3.16289 3.35269 3.40071 3.62401 3.75768 4.03161 4.06110 4.17162 4.24340 4.32283 4.38793 4.40723 4.50027 4.53452 4.53728 4.69735 4.74209 4.80851 4.84368 4.90697 5.01882 5.23201 5.34384 5.43744 5.50653 5.52499 5.90251 5.91401 6.03774 6.21120 6.30988 6.57415 6.59139 6.86318 7.24735 7.37613 7.52433 7.94404 8.74458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.001991 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.199167 B =14062.540587 C =14824.058014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.063 0.937 4 N -0.695 5.695 5 C 0.502 3.498 6 O -0.577 6.577 7 C 0.106 3.894 8 H 0.166 0.834 9 C 0.104 3.896 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.643 6.643 13 N -0.716 5.716 14 C -0.098 4.098 15 C 0.018 3.982 16 N -0.482 5.482 17 C 0.019 3.981 18 C 0.450 3.550 19 O -0.608 6.608 20 N -0.593 5.593 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.231 1.231 29 C 0.015 3.985 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.424 0.576 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.439 0.561 37 H 0.433 0.567 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.118 0.882 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -16.271 -28.535 32.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 H 0.081 0.919 4 N -0.348 5.348 5 C 0.287 3.713 6 O -0.455 6.455 7 C -0.003 4.003 8 H 0.183 0.817 9 C -0.020 4.020 10 N -0.394 5.394 11 C 0.391 3.609 12 O -0.525 6.525 13 N -0.377 5.377 14 C -0.118 4.118 15 C -0.112 4.112 16 N -0.205 5.205 17 C -0.112 4.112 18 C 0.238 3.762 19 O -0.492 6.492 20 N -0.235 5.235 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.199 1.199 28 H -0.154 1.154 29 C -0.113 4.113 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.262 0.738 34 H 0.162 0.838 35 H 0.111 0.889 36 H 0.283 0.717 37 H 0.275 0.725 38 H 0.145 0.855 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.098 0.902 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.117 -15.898 -28.018 32.234 hybrid contribution 0.573 1.792 0.100 1.884 sum -0.544 -14.106 -27.919 31.285 Atomic orbital electron populations 1.22098 0.94652 1.03374 1.01613 1.20797 0.94423 0.96061 0.83374 0.91925 1.45773 1.66108 1.14999 1.07932 1.21277 0.77482 0.87119 0.85454 1.90788 1.50957 1.18372 1.85375 1.22220 1.00562 0.90827 0.86707 0.81700 1.22629 0.97889 0.99721 0.81809 1.45071 1.38105 1.37760 1.18460 1.16236 0.80371 0.81030 0.83290 1.90964 1.74589 1.52851 1.34061 1.44897 1.38802 1.40795 1.13198 1.23194 0.96131 1.00849 0.91590 1.23739 0.93527 0.97595 0.96313 1.68415 1.02316 1.32708 1.17067 1.22448 1.00164 0.96416 0.92191 1.20898 0.84917 0.81350 0.89080 1.90538 1.30346 1.56810 1.71478 1.42078 1.29068 1.36815 1.15576 1.18989 1.13650 1.20635 0.92343 0.92641 1.26115 1.02118 0.97268 0.95971 1.69805 1.42504 1.31961 1.13164 0.85380 0.77496 0.79588 0.79161 1.18360 1.19909 1.15436 1.24111 0.96153 1.03803 0.87186 0.89945 0.92292 0.93617 0.73765 0.83830 0.88905 0.71740 0.72472 0.85529 0.92450 0.91373 0.86308 0.90205 0.77605 0.91153 0.86393 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.44 71.98 0.68 -1.53 16 2 C 0.16 2.07 2.29 44.99 0.10 2.18 16 3 H 0.06 1.22 7.48 -2.39 -0.02 1.21 16 4 N -0.69 -4.17 4.94 -442.52 -2.19 -6.36 16 5 C 0.50 5.57 6.91 87.66 0.61 6.17 16 6 O -0.58 -13.55 16.25 -3.04 -0.05 -13.60 16 7 C 0.11 0.47 4.17 44.51 0.19 0.66 16 8 H 0.17 -0.75 8.14 -2.39 -0.02 -0.77 16 9 C 0.10 0.12 7.70 86.65 0.67 0.78 16 10 N -0.73 -6.92 6.37 -477.33 -3.04 -9.96 16 11 C 0.69 13.24 8.92 179.57 1.60 14.84 16 12 O -0.64 -19.38 18.05 -4.00 -0.07 -19.45 16 13 N -0.72 -9.56 5.62 -460.34 -2.59 -12.15 16 14 C -0.10 -1.37 3.36 -10.15 -0.03 -1.41 16 15 C 0.02 0.47 6.22 86.40 0.54 1.00 16 16 N -0.48 -12.86 5.95 -912.44 -5.43 -18.29 16 17 C 0.02 0.58 5.31 85.56 0.45 1.03 16 18 C 0.45 20.17 7.59 87.66 0.67 20.83 16 19 O -0.61 -33.31 15.13 -3.06 -0.05 -33.36 16 20 N -0.59 -28.03 5.09 -306.98 -1.56 -29.59 16 21 C -0.33 -19.20 10.16 84.04 0.85 -18.34 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 24 N -0.93 -56.44 13.96 21.66 0.30 -56.14 16 25 Si 0.96 38.93 27.74 68.60 1.90 40.83 16 26 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 28 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 29 C 0.02 0.22 7.41 86.41 0.64 0.86 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.98 8.09 -2.38 -0.02 0.96 16 32 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.42 -0.94 8.60 -92.71 -0.80 -1.74 16 34 H 0.14 -1.04 8.14 -2.38 -0.02 -1.06 16 35 H 0.09 0.07 7.72 -2.39 -0.02 0.06 16 36 H 0.44 2.88 8.96 -92.71 -0.83 2.05 16 37 H 0.43 5.88 8.96 -92.71 -0.83 5.05 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 40 H 0.07 2.16 8.09 -2.39 -0.02 2.14 16 41 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.08 1.99 7.69 -2.38 -0.02 1.97 16 43 H 0.39 15.22 5.76 -92.70 -0.53 14.68 16 44 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 1.03 7.75 -2.39 -0.02 1.01 16 Total: -1.00 -98.38 384.26 -7.34 -105.72 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -1.99 Total: 25.68 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 7.43 Total: 26.66 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -14.51 Total: -132.49 kcal Atomic # 8 Polarization: -66.24 SS G_CDS: -0.17 Total: -66.40 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 1.90 Total: 40.83 kcal Total: -98.38 -7.34 -105.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330038063.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.018 kcal (2) G-P(sol) polarization free energy of solvation -98.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds