Wall clock time and date at job start Tue Mar 31 2020 22:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47845 * 2 1 4 4 N 1.46500 * 109.46992 * 239.99831 * 2 1 3 5 5 C 1.34780 * 119.99958 * 85.00205 * 4 2 1 6 6 O 1.21282 * 119.99903 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99852 * 179.97438 * 5 4 2 8 8 H 1.09004 * 110.48704 * 42.70390 * 7 5 4 9 9 C 1.54098 * 110.55243 * 280.00187 * 7 5 4 10 10 N 1.47053 * 103.86212 * 241.40823 * 9 7 5 11 11 C 1.33945 * 109.17913 * 359.97438 * 10 9 7 12 12 O 1.21589 * 123.04143 * 179.97438 * 11 10 9 13 13 N 1.33949 * 113.91740 * 359.97438 * 11 10 9 14 14 C 1.53005 * 109.46811 * 120.00398 * 2 1 3 15 15 C 1.53511 * 114.16806 * 185.04924 * 14 2 1 16 16 N 1.47473 * 87.93507 * 139.66812 * 15 14 2 17 17 C 1.46903 * 111.00338 * 221.29844 * 16 15 14 18 18 C 1.50700 * 109.47065 * 169.99718 * 17 16 15 19 19 O 1.21291 * 120.00422 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99574 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99617 * 179.72338 * 20 18 17 22 22 H 1.08000 * 120.00386 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99823 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00243 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99995 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47216 * 59.99962 * 25 23 21 27 27 H 1.48504 * 109.47083 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47179 * 299.99655 * 25 23 21 29 29 C 1.47482 * 87.83605 * 332.99064 * 16 15 14 30 30 H 1.09001 * 109.47690 * 179.16903 * 1 2 3 31 31 H 1.09003 * 109.46781 * 299.17002 * 1 2 3 32 32 H 1.09006 * 109.46931 * 59.16474 * 1 2 3 33 33 H 0.97000 * 119.99990 * 265.00585 * 4 2 1 34 34 H 1.09004 * 110.54483 * 359.97438 * 9 7 5 35 35 H 1.09000 * 110.55196 * 122.81209 * 9 7 5 36 36 H 0.97002 * 125.40986 * 179.97438 * 10 9 7 37 37 H 0.96995 * 125.40675 * 180.02562 * 13 11 10 38 38 H 1.08995 * 113.25994 * 52.09753 * 14 2 1 39 39 H 1.09007 * 113.47718 * 24.89782 * 15 14 2 40 40 H 1.08999 * 113.47782 * 254.43528 * 15 14 2 41 41 H 1.08994 * 109.47349 * 49.99349 * 17 16 15 42 42 H 1.08997 * 109.46533 * 289.99603 * 17 16 15 43 43 H 0.96999 * 120.00492 * 359.97438 * 20 18 17 44 44 H 0.97000 * 119.99965 * 179.97438 * 24 23 21 45 45 H 1.08991 * 113.48262 * 141.77949 * 29 16 15 46 46 H 1.09004 * 113.47136 * 272.24353 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6499 -0.7286 -3.5875 8 1 2.1886 -1.7124 -3.6753 9 6 4.1854 -0.8525 -3.5510 10 7 4.6275 -0.1045 -4.7373 11 6 3.5552 0.3825 -5.3754 12 8 3.6327 1.0439 -6.3926 13 7 2.3897 0.0748 -4.7913 14 6 2.0399 -0.7214 1.2493 15 6 3.5647 -0.6784 1.4214 16 7 3.3424 -0.4658 2.8637 17 6 4.2714 0.5395 3.3970 18 6 3.8604 0.9097 4.7988 19 8 2.8888 0.3879 5.3038 20 7 4.5724 1.8207 5.4914 21 6 4.1951 2.1617 6.7646 22 1 3.3276 1.7001 7.2127 23 6 4.9288 3.1013 7.4784 24 7 5.9846 3.6627 6.9334 25 14 4.4152 3.5654 9.2134 26 1 4.4417 2.3578 10.0773 27 1 5.3554 4.5804 9.7532 28 1 3.0406 4.1267 9.1893 29 6 2.0454 0.1445 2.5168 30 1 -0.3634 -1.0275 -0.0149 31 1 -0.3633 0.5009 0.8974 32 1 -0.3633 0.5268 -0.8825 33 1 2.2489 -1.6318 -1.1526 34 1 4.5843 -0.3998 -2.6431 35 1 4.4869 -1.8975 -3.6233 36 1 5.5493 0.0170 -5.0139 37 1 1.5134 0.3403 -5.1113 38 1 1.6034 -1.7111 1.3831 39 1 4.0341 0.1707 0.9245 40 1 4.0544 -1.6249 1.1925 41 1 4.2481 1.4273 2.7651 42 1 5.2813 0.1297 3.4108 43 1 5.3495 2.2378 5.0877 44 1 6.4966 4.3189 7.4316 45 1 1.2474 -0.1044 3.2162 46 1 2.1093 1.2133 2.3123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330038065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:49 Heat of formation + Delta-G solvation = -44.014092 kcal Electronic energy + Delta-G solvation = -29179.382705 eV Core-core repulsion = 24912.857076 eV Total energy + Delta-G solvation = -4266.525629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77420 -40.61603 -39.43826 -37.82701 -36.64299 -35.60436 -33.92806 -33.45807 -32.04042 -31.26865 -29.87559 -29.12242 -26.02297 -25.79287 -24.76138 -23.98643 -22.22218 -21.97672 -20.95633 -19.89967 -19.27011 -18.43125 -18.05087 -17.85996 -16.85509 -16.58345 -16.09578 -16.03709 -15.65023 -15.46780 -15.04607 -14.86095 -14.57305 -14.48709 -14.25955 -14.02920 -13.77348 -13.65115 -13.49994 -13.07707 -12.95935 -12.65118 -12.53105 -12.31221 -11.98921 -11.64298 -11.48763 -11.11066 -11.04481 -10.91429 -10.73250 -10.58051 -10.47470 -10.44561 -10.23622 -9.84369 -9.52512 -9.51817 -9.34368 -8.78876 -8.29611 -7.99412 -6.44158 -3.85244 1.98965 2.26211 2.53039 2.86552 3.18116 3.24170 3.28289 3.51107 3.69083 3.85427 3.93726 4.03990 4.18610 4.25095 4.30894 4.52343 4.67971 4.84950 4.88915 4.95951 5.06112 5.11185 5.14257 5.21596 5.34873 5.42542 5.45874 5.59016 5.63906 5.68238 5.74940 5.90846 5.99047 6.09700 6.20598 6.21637 6.51674 6.53524 6.68050 6.89237 7.03685 7.13401 7.52447 7.72505 8.02472 8.19577 8.58192 9.15022 9.50897 10.02364 10.73467 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.001968 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.170318 B =14227.427436 C =14886.941650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.090 0.910 4 N -0.716 5.716 5 C 0.500 3.500 6 O -0.519 6.519 7 C 0.103 3.897 8 H 0.118 0.882 9 C 0.104 3.896 10 N -0.739 5.739 11 C 0.705 3.295 12 O -0.583 6.583 13 N -0.715 5.715 14 C -0.130 4.130 15 C 0.001 3.999 16 N -0.443 5.443 17 C 0.009 3.991 18 C 0.443 3.557 19 O -0.579 6.579 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.402 0.598 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.434 0.566 37 H 0.434 0.566 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.094 0.906 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 -13.110 -21.249 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.048 3.952 3 H 0.108 0.892 4 N -0.368 5.368 5 C 0.283 3.717 6 O -0.393 6.393 7 C -0.008 4.008 8 H 0.135 0.865 9 C -0.022 4.022 10 N -0.402 5.402 11 C 0.404 3.596 12 O -0.460 6.460 13 N -0.377 5.377 14 C -0.149 4.149 15 C -0.129 4.129 16 N -0.165 5.165 17 C -0.123 4.123 18 C 0.228 3.772 19 O -0.463 6.463 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.104 4.104 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.276 0.724 37 H 0.277 0.723 38 H 0.126 0.874 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.919 -12.639 -20.865 24.886 hybrid contribution 0.544 0.962 0.201 1.124 sum -4.374 -11.677 -20.664 24.135 Atomic orbital electron populations 1.22132 0.94640 1.02319 1.02881 1.21050 0.94498 0.97116 0.82524 0.89237 1.46042 1.67130 1.14190 1.09487 1.20754 0.78574 0.87746 0.84594 1.90790 1.48578 1.15472 1.84443 1.21861 0.96912 0.96312 0.85689 0.86489 1.22271 0.90605 0.98770 0.90577 1.45056 1.08760 1.58185 1.28229 1.15866 0.81401 0.79408 0.82906 1.91019 1.85675 1.43954 1.25324 1.44818 1.08647 1.58161 1.26083 1.23133 0.96631 1.01080 0.94076 1.23870 0.95637 1.02106 0.91260 1.68826 1.02544 1.33269 1.11817 1.22490 0.98285 0.94798 0.96726 1.19647 0.86422 0.83848 0.87254 1.90519 1.29140 1.55965 1.70712 1.41869 1.27216 1.36411 1.14544 1.19645 1.12292 1.21104 0.89897 0.87968 1.25272 0.95728 0.96641 1.00304 1.69604 1.17471 1.28633 1.38593 0.85912 0.78323 0.78295 0.81658 1.19867 1.20959 1.19895 1.23643 0.95335 0.96981 0.94424 0.92224 0.90976 0.92252 0.76346 0.89315 0.88442 0.72422 0.72298 0.87353 0.91560 0.89769 0.92719 0.89112 0.77502 0.91785 0.88764 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.47 37.16 0.35 -0.93 16 2 C 0.15 1.23 2.34 -67.93 -0.16 1.07 16 3 H 0.09 0.96 7.43 -51.93 -0.39 0.57 16 4 N -0.72 -3.85 4.96 -53.80 -0.27 -4.12 16 5 C 0.50 3.68 6.92 -10.98 -0.08 3.61 16 6 O -0.52 -6.48 16.23 5.56 0.09 -6.39 16 7 C 0.10 0.47 4.17 -68.21 -0.28 0.18 16 8 H 0.12 0.12 8.14 -51.93 -0.42 -0.30 16 9 C 0.10 0.36 7.70 -3.17 -0.02 0.33 16 10 N -0.74 -4.81 6.37 -64.70 -0.41 -5.23 16 11 C 0.71 7.32 8.92 -88.40 -0.79 6.54 16 12 O -0.58 -8.76 18.05 5.29 0.10 -8.66 16 13 N -0.71 -5.52 5.61 -59.33 -0.33 -5.85 16 14 C -0.13 -1.15 3.49 -90.09 -0.31 -1.47 16 15 C 0.00 0.01 7.17 -7.56 -0.05 -0.05 16 16 N -0.44 -6.71 6.06 -246.11 -1.49 -8.20 16 17 C 0.01 0.15 5.31 -4.97 -0.03 0.13 16 18 C 0.44 10.30 7.62 -10.99 -0.08 10.22 16 19 O -0.58 -15.44 15.34 5.55 0.09 -15.36 16 20 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.03 0.35 6.27 -7.55 -0.05 0.30 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.40 0.89 8.60 -40.82 -0.35 0.54 16 34 H 0.09 0.31 7.72 -51.93 -0.40 -0.09 16 35 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.43 2.16 8.96 -40.82 -0.37 1.80 16 37 H 0.43 3.13 8.96 -40.82 -0.37 2.76 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.09 1.46 8.13 -51.93 -0.42 1.04 16 46 H 0.07 0.95 7.56 -51.93 -0.39 0.55 16 LS Contribution 387.55 15.07 5.84 5.84 Total: -1.00 -38.57 387.55 -9.19 -47.76 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.69 Total: 10.25 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -1.75 Total: 11.98 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -1.84 Total: -61.34 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: 0.27 Total: -30.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.57 -9.19 -47.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330038065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.745 kcal (2) G-P(sol) polarization free energy of solvation -38.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds