Wall clock time and date at job start Tue Mar 31 2020 22:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47845 * 2 1 4 4 N 1.46500 * 109.46992 * 239.99831 * 2 1 3 5 5 C 1.34780 * 119.99958 * 85.00205 * 4 2 1 6 6 O 1.21282 * 119.99903 * 0.02562 * 5 4 2 7 7 C 1.50702 * 119.99852 * 179.97438 * 5 4 2 8 8 H 1.09004 * 110.48704 * 42.70390 * 7 5 4 9 9 C 1.54098 * 110.55243 * 280.00187 * 7 5 4 10 10 N 1.47053 * 103.86212 * 241.40823 * 9 7 5 11 11 C 1.33945 * 109.17913 * 359.97438 * 10 9 7 12 12 O 1.21589 * 123.04143 * 179.97438 * 11 10 9 13 13 N 1.33949 * 113.91740 * 359.97438 * 11 10 9 14 14 C 1.53005 * 109.46811 * 120.00398 * 2 1 3 15 15 C 1.53511 * 114.16806 * 185.04924 * 14 2 1 16 16 N 1.47473 * 87.93507 * 139.66812 * 15 14 2 17 17 C 1.46903 * 111.00338 * 221.29844 * 16 15 14 18 18 C 1.50700 * 109.47065 * 169.99718 * 17 16 15 19 19 O 1.21291 * 120.00422 * 359.97438 * 18 17 16 20 20 N 1.34777 * 119.99574 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99617 * 179.72338 * 20 18 17 22 22 H 1.08000 * 120.00386 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99823 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00243 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99995 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47216 * 59.99962 * 25 23 21 27 27 H 1.48504 * 109.47083 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47179 * 299.99655 * 25 23 21 29 29 C 1.47482 * 87.83605 * 332.99064 * 16 15 14 30 30 H 1.09001 * 109.47690 * 179.16903 * 1 2 3 31 31 H 1.09003 * 109.46781 * 299.17002 * 1 2 3 32 32 H 1.09006 * 109.46931 * 59.16474 * 1 2 3 33 33 H 0.97000 * 119.99990 * 265.00585 * 4 2 1 34 34 H 1.09004 * 110.54483 * 359.97438 * 9 7 5 35 35 H 1.09000 * 110.55196 * 122.81209 * 9 7 5 36 36 H 0.97002 * 125.40986 * 179.97438 * 10 9 7 37 37 H 0.96995 * 125.40675 * 180.02562 * 13 11 10 38 38 H 1.08995 * 113.25994 * 52.09753 * 14 2 1 39 39 H 1.09007 * 113.47718 * 24.89782 * 15 14 2 40 40 H 1.08999 * 113.47782 * 254.43528 * 15 14 2 41 41 H 1.08994 * 109.47349 * 49.99349 * 17 16 15 42 42 H 1.08997 * 109.46533 * 289.99603 * 17 16 15 43 43 H 0.96999 * 120.00492 * 359.97438 * 20 18 17 44 44 H 0.97000 * 119.99965 * 179.97438 * 24 23 21 45 45 H 1.08991 * 113.48262 * 141.77949 * 29 16 15 46 46 H 1.09004 * 113.47136 * 272.24353 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8591 1.1586 -2.4115 7 6 2.6499 -0.7286 -3.5875 8 1 2.1886 -1.7124 -3.6753 9 6 4.1854 -0.8525 -3.5510 10 7 4.6275 -0.1045 -4.7373 11 6 3.5552 0.3825 -5.3754 12 8 3.6327 1.0439 -6.3926 13 7 2.3897 0.0748 -4.7913 14 6 2.0399 -0.7214 1.2493 15 6 3.5647 -0.6784 1.4214 16 7 3.3424 -0.4658 2.8637 17 6 4.2714 0.5395 3.3970 18 6 3.8604 0.9097 4.7988 19 8 2.8888 0.3879 5.3038 20 7 4.5724 1.8207 5.4914 21 6 4.1951 2.1617 6.7646 22 1 3.3276 1.7001 7.2127 23 6 4.9288 3.1013 7.4784 24 7 5.9846 3.6627 6.9334 25 14 4.4152 3.5654 9.2134 26 1 4.4417 2.3578 10.0773 27 1 5.3554 4.5804 9.7532 28 1 3.0406 4.1267 9.1893 29 6 2.0454 0.1445 2.5168 30 1 -0.3634 -1.0275 -0.0149 31 1 -0.3633 0.5009 0.8974 32 1 -0.3633 0.5268 -0.8825 33 1 2.2489 -1.6318 -1.1526 34 1 4.5843 -0.3998 -2.6431 35 1 4.4869 -1.8975 -3.6233 36 1 5.5493 0.0170 -5.0139 37 1 1.5134 0.3403 -5.1113 38 1 1.6034 -1.7111 1.3831 39 1 4.0341 0.1707 0.9245 40 1 4.0544 -1.6249 1.1925 41 1 4.2481 1.4273 2.7651 42 1 5.2813 0.1297 3.4108 43 1 5.3495 2.2378 5.0877 44 1 6.4966 4.3189 7.4316 45 1 1.2474 -0.1044 3.2162 46 1 2.1093 1.2133 2.3123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330038065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:48 Heat of formation + Delta-G solvation = -81.457384 kcal Electronic energy + Delta-G solvation = -29181.006368 eV Core-core repulsion = 24912.857076 eV Total energy + Delta-G solvation = -4268.149292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35479 -41.59370 -40.29503 -39.53103 -37.40697 -36.41232 -35.90342 -33.98118 -33.34831 -32.76907 -30.94327 -29.71882 -27.47115 -26.82976 -25.79558 -24.92460 -22.90561 -22.76198 -21.58507 -21.00983 -20.73274 -19.91432 -19.06639 -18.53903 -17.87024 -17.47827 -17.20067 -16.80748 -16.68852 -16.50171 -16.22351 -16.04922 -15.73108 -15.48751 -15.26896 -15.08603 -14.86277 -14.79343 -14.19600 -13.92190 -13.87996 -13.60182 -13.51765 -13.43607 -13.15470 -13.03151 -12.90837 -12.55992 -12.45417 -12.15231 -11.91127 -11.83624 -11.57591 -11.52917 -11.42964 -11.26923 -10.54022 -10.35064 -10.16035 -10.03475 -9.82241 -9.71443 -8.48302 -5.97267 1.38305 1.40198 1.44689 1.51204 1.69526 1.97742 2.03199 2.20403 2.27455 2.86865 3.08516 3.17961 3.28767 3.35678 3.41011 3.65239 3.77062 4.04768 4.11101 4.18755 4.23272 4.35780 4.40657 4.43069 4.51908 4.53362 4.54856 4.70238 4.75285 4.81655 4.83335 4.89087 5.01273 5.22185 5.33519 5.38258 5.42192 5.50741 5.90261 5.91746 6.08496 6.21379 6.30932 6.58030 6.59149 7.10714 7.24745 7.52518 7.53966 8.09522 8.68891 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.001968 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.170318 B =14227.427436 C =14886.941650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.061 0.939 4 N -0.695 5.695 5 C 0.501 3.499 6 O -0.577 6.577 7 C 0.107 3.893 8 H 0.167 0.833 9 C 0.102 3.898 10 N -0.732 5.732 11 C 0.692 3.308 12 O -0.642 6.642 13 N -0.716 5.716 14 C -0.097 4.097 15 C 0.010 3.990 16 N -0.471 5.471 17 C 0.022 3.978 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.013 3.987 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.424 0.576 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.439 0.561 37 H 0.434 0.566 38 H 0.130 0.870 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.111 0.889 43 H 0.395 0.605 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -15.622 -21.797 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.080 0.920 4 N -0.348 5.348 5 C 0.286 3.714 6 O -0.455 6.455 7 C -0.002 4.002 8 H 0.184 0.816 9 C -0.022 4.022 10 N -0.394 5.394 11 C 0.391 3.609 12 O -0.525 6.525 13 N -0.376 5.376 14 C -0.116 4.116 15 C -0.118 4.118 16 N -0.193 5.193 17 C -0.109 4.109 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.117 4.117 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.262 0.738 34 H 0.111 0.889 35 H 0.162 0.838 36 H 0.282 0.718 37 H 0.276 0.724 38 H 0.148 0.852 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.187 -15.232 -21.385 26.587 hybrid contribution 0.284 1.701 0.397 1.769 sum -3.903 -13.531 -20.988 25.275 Atomic orbital electron populations 1.22093 0.94487 1.03346 1.01730 1.20735 0.94511 0.95929 0.83253 0.92043 1.45767 1.66041 1.15008 1.08018 1.21298 0.77477 0.87045 0.85560 1.90786 1.51205 1.18186 1.85318 1.22211 0.98168 0.97116 0.82700 0.81583 1.22653 0.89388 1.00947 0.89247 1.45088 1.08248 1.57572 1.28539 1.16238 0.82768 0.79269 0.82662 1.90962 1.86696 1.46680 1.28120 1.44876 1.07959 1.58042 1.26741 1.22941 0.96223 1.00692 0.91749 1.23956 0.96420 1.03818 0.87652 1.68825 1.02588 1.32492 1.15377 1.22367 0.99582 0.96335 0.92658 1.20778 0.85146 0.82137 0.89247 1.90486 1.30673 1.56924 1.72298 1.41965 1.27783 1.37299 1.14246 1.19617 1.12563 1.22532 0.91584 0.90317 1.26057 0.95504 0.95986 1.03838 1.69667 1.17881 1.28737 1.39904 0.84991 0.78154 0.78184 0.77034 1.19593 1.19498 1.19729 1.23653 0.94295 0.97259 0.96506 0.90032 0.92127 0.93511 0.73758 0.88949 0.83756 0.71774 0.72442 0.85208 0.91001 0.86594 0.91111 0.87116 0.77085 0.91291 0.91540 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.47 71.98 0.68 -1.63 16 2 C 0.16 2.28 2.34 44.99 0.11 2.39 16 3 H 0.06 1.29 7.43 -2.39 -0.02 1.27 16 4 N -0.70 -4.96 4.96 -442.52 -2.19 -7.15 16 5 C 0.50 6.11 6.92 87.66 0.61 6.72 16 6 O -0.58 -14.15 16.23 -3.04 -0.05 -14.20 16 7 C 0.11 0.58 4.17 44.51 0.19 0.77 16 8 H 0.17 -0.64 8.14 -2.38 -0.02 -0.66 16 9 C 0.10 0.27 7.70 86.65 0.67 0.93 16 10 N -0.73 -8.05 6.37 -477.35 -3.04 -11.09 16 11 C 0.69 13.99 8.92 179.57 1.60 15.60 16 12 O -0.64 -20.02 18.05 -4.00 -0.07 -20.09 16 13 N -0.72 -10.09 5.61 -460.34 -2.58 -12.68 16 14 C -0.10 -1.46 3.49 -10.45 -0.04 -1.50 16 15 C 0.01 0.16 7.17 83.57 0.60 0.76 16 16 N -0.47 -13.52 6.06 -932.54 -5.65 -19.18 16 17 C 0.02 0.74 5.31 85.56 0.45 1.19 16 18 C 0.44 20.81 7.62 87.66 0.67 21.48 16 19 O -0.62 -33.97 15.34 -3.06 -0.05 -34.02 16 20 N -0.58 -29.62 5.29 -306.98 -1.62 -31.24 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 C 0.01 0.34 6.27 83.57 0.52 0.87 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.42 -0.47 8.60 -92.71 -0.80 -1.27 16 34 H 0.09 0.25 7.72 -2.39 -0.02 0.23 16 35 H 0.14 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H 0.44 3.68 8.96 -92.71 -0.83 2.85 16 37 H 0.43 6.07 8.96 -92.71 -0.83 5.24 16 38 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.15 7.73 -2.38 -0.02 1.14 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 2.12 7.56 -2.39 -0.02 2.10 16 42 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 44 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 45 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 46 H 0.06 1.61 7.56 -2.39 -0.02 1.59 16 Total: -1.00 -90.50 387.55 -7.74 -98.24 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -2.13 Total: 26.88 kcal Atomic # 6 Polarization: 21.78 SS G_CDS: 7.34 Total: 29.12 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -14.81 Total: -130.94 kcal Atomic # 8 Polarization: -68.14 SS G_CDS: -0.17 Total: -68.31 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -90.50 -7.74 -98.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330038065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.783 kcal (2) G-P(sol) polarization free energy of solvation -90.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds