Wall clock time and date at job start Tue Mar 31 2020 23:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47030 * 2 1 4 4 C 1.52999 * 109.46993 * 119.99675 * 2 1 3 5 5 N 1.46505 * 109.46797 * 175.00376 * 4 2 1 6 6 C 1.46496 * 119.99760 * 269.99781 * 5 4 2 7 7 C 1.34770 * 120.00047 * 89.99963 * 5 4 2 8 8 O 1.21741 * 120.00078 * 0.37074 * 7 5 4 9 9 C 1.46382 * 120.00292 * 180.36817 * 7 5 4 10 10 C 1.36722 * 126.82148 * 347.95462 * 9 7 5 11 11 N 1.33223 * 107.96360 * 180.02562 * 10 9 7 12 12 C 1.31534 * 109.75996 * 359.97438 * 11 10 9 13 13 O 1.35209 * 125.49532 * 180.02562 * 12 11 10 14 14 N 1.34943 * 109.01705 * 0.02562 * 12 11 10 15 15 C 1.46506 * 126.54821 * 179.97438 * 14 12 11 16 16 N 1.46897 * 109.47466 * 240.00124 * 2 1 3 17 17 C 1.46900 * 111.00178 * 84.99634 * 16 2 1 18 18 C 1.50701 * 109.47264 * 180.02562 * 17 16 2 19 19 O 1.21296 * 119.99744 * 359.97438 * 18 17 16 20 20 N 1.34770 * 119.99992 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99824 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00046 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99847 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00254 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99694 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46952 * 60.00333 * 25 23 21 27 27 H 1.48497 * 109.46748 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47233 * 299.99867 * 25 23 21 29 29 H 1.09004 * 109.47030 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47632 * 299.99991 * 1 2 3 31 31 H 1.09004 * 109.47206 * 60.00529 * 1 2 3 32 32 H 1.09000 * 109.47278 * 55.00543 * 4 2 1 33 33 H 1.08993 * 109.47231 * 295.00011 * 4 2 1 34 34 H 1.08998 * 109.47725 * 263.41972 * 6 5 4 35 35 H 1.08999 * 109.47596 * 23.42205 * 6 5 4 36 36 H 1.09003 * 109.46894 * 143.42023 * 6 5 4 37 37 H 1.08002 * 126.02109 * 359.77031 * 10 9 7 38 38 H 0.96700 * 113.99883 * 269.97595 * 13 12 11 39 39 H 1.08996 * 109.46613 * 264.86688 * 15 14 12 40 40 H 1.09002 * 109.46576 * 24.86065 * 15 14 12 41 41 H 1.08996 * 109.47405 * 144.86780 * 15 14 12 42 42 H 1.00902 * 110.99676 * 321.04724 * 16 2 1 43 43 H 1.09004 * 109.46830 * 300.00106 * 17 16 2 44 44 H 1.09000 * 109.47298 * 60.00334 * 17 16 2 45 45 H 0.96999 * 120.00553 * 359.97438 * 20 18 17 46 46 H 0.96993 * 119.99719 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1258 -1.9918 0.5613 7 6 4.2674 0.1494 1.7156 8 8 3.7474 1.1147 2.2445 9 6 5.7263 0.0484 1.6498 10 6 6.4565 -1.0547 1.3044 11 7 7.7470 -0.7301 1.3698 12 6 7.8714 0.5261 1.7394 13 8 9.0412 1.1833 1.9058 14 7 6.6433 1.0532 1.9259 15 6 6.3362 2.4244 2.3408 16 7 2.0197 -0.6924 -1.1994 17 6 2.0824 0.2226 -2.3469 18 6 2.5874 -0.5218 -3.5560 19 8 2.8679 -1.6987 -3.4701 20 7 2.7283 0.1205 -4.7324 21 6 3.1882 -0.5566 -5.8323 22 1 3.4379 -1.6045 -5.7559 23 6 3.3329 0.1054 -7.0454 24 7 3.0286 1.3804 -7.1385 25 14 3.9602 -0.8170 -8.5438 26 1 3.0393 -1.9395 -8.8553 27 1 4.0228 0.1078 -9.7039 28 1 5.3166 -1.3527 -8.2633 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1582 2.1369 34 1 4.3888 -2.7210 1.3275 35 1 3.4279 -2.4421 -0.1446 36 1 5.0264 -1.6794 0.0327 37 1 6.0577 -2.0204 1.0312 38 1 9.4020 1.1235 2.8010 39 1 6.1940 2.4538 3.4211 40 1 7.1616 3.0808 2.0650 41 1 5.4248 2.7585 1.8452 42 1 1.4496 -1.4979 -1.4100 43 1 1.0870 0.6162 -2.5525 44 1 2.7588 1.0462 -2.1182 45 1 2.5043 1.0618 -4.8010 46 1 3.1300 1.8425 -7.9852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331531601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:45 Heat of formation + Delta-G solvation = -15.631752 kcal Electronic energy + Delta-G solvation = -30110.703067 eV Core-core repulsion = 25845.408188 eV Total energy + Delta-G solvation = -4265.294878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44555 -39.73385 -38.35368 -37.57925 -36.83817 -35.24660 -34.08542 -33.86287 -31.44353 -31.04158 -29.60092 -27.72992 -26.89206 -26.45904 -25.95675 -23.95898 -22.57023 -21.96085 -20.92551 -19.55820 -19.22649 -18.72645 -17.89411 -17.17944 -16.84331 -16.55044 -15.96785 -15.79890 -15.41399 -15.07327 -14.73453 -14.58380 -14.39780 -14.27678 -13.92917 -13.82856 -13.43680 -13.18413 -12.97356 -12.89026 -12.83169 -12.49268 -12.40143 -12.17146 -12.16013 -11.70026 -11.58438 -11.45382 -11.32022 -11.01223 -10.95713 -10.43887 -10.43122 -10.20895 -9.96817 -9.90955 -9.49216 -8.81900 -8.61986 -8.37957 -8.00582 -7.94310 -6.41059 -3.82009 1.05885 1.99216 2.46924 3.03326 3.20765 3.23856 3.26507 3.30807 3.59876 3.91399 4.09563 4.32242 4.37895 4.56100 4.81889 4.86706 4.95078 5.02664 5.11332 5.15524 5.23831 5.29168 5.30980 5.34702 5.40100 5.47119 5.67152 5.72000 5.73635 5.77414 5.91369 6.02719 6.05950 6.11732 6.19840 6.26231 6.27900 6.50046 7.16959 7.26492 7.32913 7.55431 7.61959 7.66079 8.06455 8.07221 8.61336 9.18135 9.54856 10.05770 10.76625 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.003114 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.819859 B = 8990.483156 C =10683.648023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 H 0.080 0.920 4 C 0.133 3.867 5 N -0.575 5.575 6 C 0.064 3.936 7 C 0.593 3.407 8 O -0.556 6.556 9 C -0.073 4.073 10 C 0.039 3.961 11 N -0.487 5.487 12 C 0.392 3.608 13 O -0.440 6.440 14 N -0.430 5.430 15 C 0.072 3.928 16 N -0.658 5.658 17 C 0.053 3.947 18 C 0.442 3.558 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.205 0.795 38 H 0.402 0.598 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.348 0.652 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.569 0.378 21.794 21.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.048 4.048 3 H 0.099 0.901 4 C 0.010 3.990 5 N -0.305 5.305 6 C -0.079 4.079 7 C 0.381 3.619 8 O -0.437 6.437 9 C -0.189 4.189 10 C -0.115 4.115 11 N -0.216 5.216 12 C 0.093 3.907 13 O -0.240 6.240 14 N -0.123 5.123 15 C -0.070 4.070 16 N -0.290 5.290 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.222 0.778 38 H 0.260 0.740 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.168 0.832 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.833 0.161 21.414 21.601 hybrid contribution -1.198 1.021 -0.563 1.672 sum 1.635 1.181 20.851 20.948 Atomic orbital electron populations 1.22448 0.96730 1.02338 1.02497 1.22035 0.92635 0.98869 0.91284 0.90145 1.21550 0.78445 1.01364 0.97614 1.47120 1.06240 1.21104 1.56033 1.22503 1.00970 0.86861 0.97525 1.16607 0.83944 0.82720 0.78581 1.90787 1.74715 1.31745 1.46448 1.20546 0.91386 0.90278 1.16646 1.23639 0.87684 0.99579 1.00587 1.70372 1.20675 1.09361 1.21192 1.20266 0.79778 0.87474 1.03168 1.84830 1.30700 1.71939 1.36541 1.45598 1.05962 1.11738 1.49020 1.22175 1.04183 0.78766 1.01870 1.60193 1.57283 1.09066 1.02465 1.21663 0.99745 0.95677 0.90893 1.19788 0.85148 0.88226 0.84117 1.90505 1.55452 1.16197 1.84648 1.41863 1.57694 1.12427 1.08006 1.19650 1.40107 0.96421 0.86754 0.87947 1.25262 0.97610 0.95758 0.99268 1.69603 1.48591 1.08883 1.27270 0.85924 0.79495 0.78814 0.80034 1.19913 1.20998 1.19836 0.92157 0.92016 0.92199 0.90103 0.89542 0.92776 0.88456 0.89601 0.77843 0.74045 0.90058 0.89253 0.88288 0.83244 0.93969 0.90082 0.77540 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.16 37.16 0.34 -1.43 16 2 C 0.06 0.75 2.89 -67.72 -0.20 0.55 16 3 H 0.08 1.10 7.80 -51.93 -0.40 0.69 16 4 C 0.13 1.41 5.12 -4.04 -0.02 1.39 16 5 N -0.58 -6.86 2.73 -183.24 -0.50 -7.36 16 6 C 0.06 0.69 8.25 59.84 0.49 1.18 16 7 C 0.59 8.16 7.62 -12.99 -0.10 8.06 16 8 O -0.56 -8.60 14.84 5.15 0.08 -8.52 16 9 C -0.07 -0.98 6.74 -81.97 -0.55 -1.53 16 10 C 0.04 0.50 9.73 -17.50 -0.17 0.33 16 11 N -0.49 -6.93 11.22 -14.62 -0.16 -7.10 16 12 C 0.39 4.94 9.01 -89.60 -0.81 4.13 16 13 O -0.44 -4.21 13.45 -17.32 -0.23 -4.44 16 14 N -0.43 -5.30 3.20 -122.12 -0.39 -5.69 16 15 C 0.07 0.67 10.42 59.85 0.62 1.30 16 16 N -0.66 -9.60 4.27 -107.99 -0.46 -10.06 16 17 C 0.05 0.92 5.97 -4.98 -0.03 0.89 16 18 C 0.44 10.19 7.82 -10.99 -0.09 10.11 16 19 O -0.58 -15.14 15.78 5.54 0.09 -15.05 16 20 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 32 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.09 0.91 7.41 -51.93 -0.39 0.53 16 34 H 0.05 0.43 7.55 -51.93 -0.39 0.04 16 35 H 0.10 1.15 7.11 -51.93 -0.37 0.78 16 36 H 0.09 1.04 5.02 -51.93 -0.26 0.78 16 37 H 0.21 2.12 4.51 -52.49 -0.24 1.89 16 38 H 0.40 1.53 9.06 45.56 0.41 1.94 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.66 8.03 -51.93 -0.42 0.24 16 41 H 0.10 1.08 7.11 -51.93 -0.37 0.71 16 42 H 0.35 5.14 8.17 -39.29 -0.32 4.82 16 43 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 44 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 45 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -35.51 383.17 -6.37 -41.88 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.45 Total: 15.79 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: -0.74 Total: 16.99 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -0.85 Total: -68.56 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.07 Total: -28.01 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.51 -6.37 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331531601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.246 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds