Wall clock time and date at job start Tue Mar 31 2020 22:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47020 * 119.99960 * 2 1 3 5 5 N 1.31265 * 120.06065 * 74.97624 * 4 2 1 6 6 C 1.32576 * 122.77798 * 180.02562 * 5 4 2 7 7 C 1.36222 * 121.87129 * 359.42499 * 6 5 4 8 8 C 1.40650 * 118.66397 * 0.85289 * 7 6 5 9 9 C 1.40237 * 122.22980 * 179.12693 * 8 7 6 10 10 C 1.36214 * 119.47731 * 180.02562 * 9 8 7 11 11 C 1.39385 * 121.02578 * 359.97438 * 10 9 8 12 12 C 1.36161 * 121.08840 * 0.02562 * 11 10 9 13 13 C 1.40380 * 119.51547 * 0.26567 * 12 11 10 14 14 N 1.46897 * 109.47045 * 240.00014 * 2 1 3 15 15 C 1.46901 * 110.99934 * 184.30240 * 14 2 1 16 16 C 1.53234 * 109.34201 * 172.74440 * 15 14 2 17 17 N 1.47086 * 108.52138 * 53.82987 * 16 15 14 18 18 C 1.34775 * 120.88219 * 128.79418 * 17 16 15 19 19 O 1.21682 * 119.99846 * 174.82502 * 18 17 16 20 20 C 1.46380 * 119.99824 * 354.82337 * 18 17 16 21 21 H 1.07995 * 120.00024 * 351.95587 * 20 18 17 22 22 C 1.40047 * 119.99560 * 171.94972 * 20 18 17 23 23 N 1.30670 * 120.00009 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99747 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47191 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47071 * 120.00108 * 24 22 20 27 27 H 1.48497 * 109.47020 * 239.99773 * 24 22 20 28 28 C 1.47081 * 118.23624 * 308.81360 * 17 16 15 29 29 C 1.46902 * 111.00108 * 59.99866 * 14 2 1 30 30 H 1.09001 * 109.47311 * 300.00243 * 1 2 3 31 31 H 1.08998 * 109.46961 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47109 * 180.02562 * 1 2 3 33 33 H 1.07999 * 119.06410 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.65929 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.26567 * 0.03735 * 9 8 7 36 36 H 1.08003 * 119.48448 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.45231 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.24538 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.49342 * 292.70531 * 15 14 2 40 40 H 1.08998 * 109.49384 * 52.78608 * 15 14 2 41 41 H 1.09007 * 109.63186 * 294.12133 * 16 15 14 42 42 H 1.08995 * 109.63210 * 173.54266 * 16 15 14 43 43 H 0.97006 * 119.99485 * 179.97438 * 23 22 20 44 44 H 1.08996 * 109.63186 * 291.47830 * 28 17 16 45 45 H 1.08992 * 109.62905 * 170.89384 * 28 17 16 46 46 H 1.08998 * 109.49145 * 307.21097 * 29 14 2 47 47 H 1.08996 * 109.48846 * 67.29313 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.9739 -2.0197 1.3037 6 6 2.3994 -2.6992 2.3595 7 6 2.9413 -2.0780 3.4440 8 6 3.0318 -0.6745 3.4423 9 6 3.5596 0.0423 4.5260 10 6 3.6201 1.4017 4.4648 11 6 3.1662 2.0912 3.3417 12 6 2.6479 1.4280 2.2714 13 6 2.5636 0.0270 2.3006 14 7 2.0197 -0.6925 -1.1994 15 6 3.4845 -0.8018 -1.1830 16 6 3.9408 -1.6828 -2.3508 17 7 3.3714 -1.1419 -3.5945 18 6 4.1538 -0.8963 -4.6640 19 8 3.6539 -0.5385 -5.7141 20 6 5.6049 -1.0601 -4.5624 21 1 6.0609 -1.2501 -3.6020 22 6 6.4017 -0.9704 -5.7105 23 7 5.8499 -0.7400 -6.8724 24 14 8.2534 -1.1800 -5.5810 25 1 8.6253 -1.4304 -4.1653 26 1 8.6808 -2.3315 -6.4157 27 1 8.9259 0.0546 -6.0591 28 6 1.9256 -0.8757 -3.6397 29 6 1.5486 -0.0264 -2.4211 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.3231 -3.7765 2.3558 34 1 3.2814 -2.6510 4.2940 35 1 3.9154 -0.4793 5.4021 36 1 4.0269 1.9538 5.2991 37 1 3.2267 3.1693 3.3201 38 1 2.2998 1.9760 1.4083 39 1 3.9245 0.1904 -1.2825 40 1 3.8054 -1.2498 -0.2426 41 1 3.5876 -2.7030 -2.1998 42 1 5.0290 -1.6746 -2.4124 43 1 6.4020 -0.6776 -7.6676 44 1 1.3787 -1.8181 -3.6124 45 1 1.6815 -0.3337 -4.5533 46 1 0.4655 0.0880 -2.3784 47 1 2.0155 0.9551 -2.5032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364697323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:39 Heat of formation + Delta-G solvation = 17.800199 kcal Electronic energy + Delta-G solvation = -29535.227691 eV Core-core repulsion = 25682.231794 eV Total energy + Delta-G solvation = -3852.995897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.02489 -40.45050 -38.79343 -38.04558 -36.00263 -34.67958 -33.81861 -32.25013 -32.18422 -31.52396 -30.15434 -28.56945 -27.20701 -25.59101 -24.53247 -24.37876 -23.63557 -22.63979 -21.30816 -20.48404 -18.79879 -18.64690 -18.34351 -17.83490 -17.22065 -16.63585 -16.23879 -16.03774 -15.93256 -15.86483 -15.56529 -15.47744 -15.14716 -14.81591 -14.65332 -14.53768 -14.42135 -13.78245 -13.64339 -13.35315 -13.28670 -13.05507 -12.96971 -12.83961 -12.77769 -12.68566 -12.59047 -12.46875 -12.16102 -11.96600 -11.91164 -11.86172 -11.61500 -10.99719 -10.96086 -10.24747 -10.00920 -9.80398 -9.43877 -9.01542 -8.94113 -8.30920 -6.85129 -0.57313 -0.01244 0.96659 1.38110 1.38282 1.56017 2.15946 2.22325 2.44316 2.64134 2.91685 3.14434 3.19729 3.56073 3.60050 3.77304 3.88627 3.95399 4.04384 4.08322 4.10071 4.19509 4.25409 4.33602 4.35595 4.40414 4.47538 4.52015 4.59068 4.61845 4.71959 4.75046 4.82560 4.87599 4.91899 4.94216 5.00720 5.09990 5.15432 5.18238 5.30814 5.36611 5.48583 5.50311 5.70595 5.72449 5.94596 6.01727 6.06064 6.12353 6.40653 6.86587 7.17152 7.40014 8.44683 8.65763 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003077 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.231594 B = 9097.362471 C = 9934.430645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.127 3.873 3 H 0.063 0.937 4 C 0.168 3.832 5 N -0.484 5.484 6 C 0.060 3.940 7 C -0.154 4.154 8 C -0.045 4.045 9 C -0.116 4.116 10 C -0.101 4.101 11 C -0.118 4.118 12 C -0.109 4.109 13 C -0.122 4.122 14 N -0.517 5.517 15 C 0.064 3.936 16 C 0.132 3.868 17 N -0.646 5.646 18 C 0.543 3.457 19 O -0.631 6.631 20 C -0.570 4.570 21 H 0.090 0.910 22 C 0.030 3.970 23 N -0.823 5.823 24 Si 0.995 3.005 25 H -0.247 1.247 26 H -0.267 1.267 27 H -0.268 1.268 28 C 0.125 3.875 29 C 0.055 3.945 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.168 0.832 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.021 0.979 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.274 0.726 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 3.023 27.875 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.019 3.981 3 H 0.080 0.920 4 C 0.016 3.984 5 N -0.192 5.192 6 C -0.084 4.084 7 C -0.174 4.174 8 C -0.050 4.050 9 C -0.134 4.134 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.128 4.128 13 C -0.125 4.125 14 N -0.242 5.242 15 C -0.065 4.065 16 C 0.008 3.992 17 N -0.382 5.382 18 C 0.349 3.651 19 O -0.519 6.519 20 C -0.606 4.606 21 H 0.107 0.893 22 C -0.185 4.185 23 N -0.452 5.452 24 Si 0.814 3.186 25 H -0.170 1.170 26 H -0.192 1.192 27 H -0.193 1.193 28 C 0.001 3.999 29 C -0.073 4.073 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.185 0.815 34 H 0.183 0.817 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.039 0.961 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.130 0.870 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.182 2.150 26.502 27.299 hybrid contribution 1.291 0.962 0.097 1.613 sum -4.891 3.112 26.600 27.224 Atomic orbital electron populations 1.21803 0.91341 1.03057 1.02898 1.20644 0.97327 0.94248 0.85874 0.91969 1.21393 0.93561 0.89732 0.93727 1.67247 1.16138 1.09072 1.26736 1.22618 0.95589 1.01266 0.88898 1.22225 1.00640 0.93570 1.00948 1.18499 0.97768 0.94388 0.94342 1.21302 0.99326 0.94937 0.97839 1.21390 0.97413 0.94491 0.98667 1.21297 0.97454 1.01720 0.93102 1.21259 0.99383 0.92309 0.99886 1.19023 1.02140 0.95617 0.95686 1.61881 1.09605 1.51676 1.01059 1.22240 0.87967 0.97960 0.98327 1.21523 0.98921 0.96112 0.82626 1.48124 1.07140 1.68898 1.14087 1.18642 0.88332 0.76684 0.81409 1.90527 1.76572 1.54258 1.30495 1.21478 0.90425 1.52775 0.95911 0.89258 1.26973 1.06322 0.91340 0.93890 1.70186 1.39005 1.35946 1.00099 0.85015 0.74881 0.78640 0.80050 1.17023 1.19159 1.19280 1.21307 0.82332 0.98908 0.97372 1.22470 1.01617 0.94387 0.88822 0.90913 0.90564 0.92086 0.81490 0.81705 0.82635 0.82660 0.83316 0.84656 0.96082 0.90432 0.92696 0.89869 0.91561 0.92506 0.92238 0.87049 0.95844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.96 71.98 0.64 -2.14 16 2 C 0.13 3.20 2.21 44.17 0.10 3.30 16 3 H 0.06 1.47 5.84 -2.39 -0.01 1.46 16 4 C 0.17 4.30 4.13 43.17 0.18 4.48 16 5 N -0.48 -13.17 9.62 -183.62 -1.77 -14.94 16 6 C 0.06 1.29 11.07 84.11 0.93 2.22 16 7 C -0.15 -2.74 9.88 22.39 0.22 -2.52 16 8 C -0.04 -0.88 5.75 -21.29 -0.12 -1.01 16 9 C -0.12 -1.64 9.81 22.28 0.22 -1.42 16 10 C -0.10 -1.24 9.95 22.07 0.22 -1.02 16 11 C -0.12 -1.69 9.94 22.06 0.22 -1.47 16 12 C -0.11 -2.05 9.35 22.31 0.21 -1.84 16 13 C -0.12 -2.77 5.74 -21.31 -0.12 -2.89 16 14 N -0.52 -16.11 4.33 -874.41 -3.79 -19.90 16 15 C 0.06 2.22 5.37 86.38 0.46 2.68 16 16 C 0.13 5.41 6.52 86.35 0.56 5.97 16 17 N -0.65 -31.64 3.01 -823.01 -2.48 -34.12 16 18 C 0.54 32.93 7.61 86.36 0.66 33.58 16 19 O -0.63 -43.67 14.55 -4.29 -0.06 -43.73 16 20 C -0.57 -33.19 8.85 24.83 0.22 -32.97 16 21 H 0.09 4.72 5.73 -2.91 -0.02 4.70 16 22 C 0.03 1.69 5.50 85.30 0.47 2.16 16 23 N -0.82 -51.36 11.86 21.84 0.26 -51.10 16 24 Si 0.99 41.75 29.56 68.60 2.03 43.78 16 25 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 26 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 28 C 0.12 5.25 6.58 86.35 0.57 5.82 16 29 C 0.06 1.81 5.40 86.39 0.47 2.27 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.42 6.25 -2.39 -0.01 1.41 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 37 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.14 2.32 6.16 -2.91 -0.02 2.30 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 2.56 6.43 -2.39 -0.02 2.55 16 41 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.08 3.53 5.38 -2.39 -0.01 3.52 16 43 H 0.27 15.44 8.29 -92.70 -0.77 14.68 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 45 H 0.06 2.80 7.10 -2.39 -0.02 2.78 16 46 H 0.11 2.92 5.95 -2.39 -0.01 2.91 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -82.05 373.13 1.29 -80.76 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 1.00 Total: 24.03 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.10 Total: 15.21 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -7.77 Total: -120.05 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.06 Total: -43.73 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -82.05 1.29 -80.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364697323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.561 kcal (2) G-P(sol) polarization free energy of solvation -82.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds