Wall clock time and date at job start Tue Mar 31 2020 22:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46956 * 2 1 4 4 C 1.50706 * 109.46636 * 240.00898 * 2 1 3 5 5 N 1.31271 * 120.05786 * 280.08860 * 4 2 1 6 6 C 1.32570 * 122.77433 * 180.02562 * 5 4 2 7 7 C 1.36206 * 121.87979 * 359.95985 * 6 5 4 8 8 C 1.40650 * 118.66653 * 0.02562 * 7 6 5 9 9 C 1.40234 * 122.23498 * 179.97438 * 8 7 6 10 10 C 1.36211 * 119.48189 * 180.02562 * 9 8 7 11 11 C 1.39376 * 121.02471 * 0.02562 * 10 9 8 12 12 C 1.36158 * 121.09249 * 359.97438 * 11 10 9 13 13 C 1.40386 * 120.05902 * 100.05226 * 4 2 1 14 14 N 1.46893 * 109.47816 * 120.00439 * 2 1 3 15 15 C 1.46899 * 110.99955 * 308.96077 * 14 2 1 16 16 C 1.53240 * 109.34182 * 172.74659 * 15 14 2 17 17 N 1.47078 * 108.52285 * 53.82217 * 16 15 14 18 18 C 1.34775 * 120.88108 * 128.83757 * 17 16 15 19 19 O 1.21694 * 120.00117 * 185.35806 * 18 17 16 20 20 C 1.46374 * 119.99885 * 5.36578 * 18 17 16 21 21 H 1.07995 * 120.00014 * 354.99203 * 20 18 17 22 22 C 1.40047 * 119.99978 * 174.99880 * 20 18 17 23 23 N 1.30673 * 119.99994 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00141 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47279 * 89.99301 * 24 22 20 26 26 H 1.48500 * 109.47386 * 209.99946 * 24 22 20 27 27 H 1.48506 * 109.46741 * 329.99387 * 24 22 20 28 28 C 1.47084 * 118.23988 * 308.81902 * 17 16 15 29 29 C 1.46900 * 111.00359 * 184.65065 * 14 2 1 30 30 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46901 * 299.98780 * 1 2 3 32 32 H 1.08996 * 109.47776 * 59.99217 * 1 2 3 33 33 H 1.08008 * 119.05942 * 179.97438 * 6 5 4 34 34 H 1.08003 * 120.66605 * 180.02562 * 7 6 5 35 35 H 1.08004 * 120.25915 * 359.97438 * 9 8 7 36 36 H 1.08006 * 119.48799 * 180.02562 * 10 9 8 37 37 H 1.08009 * 119.45058 * 180.27025 * 11 10 9 38 38 H 1.08004 * 120.24793 * 179.97438 * 12 11 10 39 39 H 1.09007 * 109.48746 * 292.69936 * 15 14 2 40 40 H 1.08998 * 109.49410 * 52.77939 * 15 14 2 41 41 H 1.09004 * 109.62722 * 294.11602 * 16 15 14 42 42 H 1.08995 * 109.63289 * 173.53929 * 16 15 14 43 43 H 0.97003 * 119.99851 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.63007 * 291.47572 * 28 17 16 45 45 H 1.08996 * 109.62778 * 170.89283 * 28 17 16 46 46 H 1.08996 * 109.49356 * 307.21837 * 29 14 2 47 47 H 1.09008 * 109.49008 * 67.26861 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 7 2.0637 -2.0221 -1.2659 6 6 2.4951 -2.7016 -2.3193 7 6 2.9377 -2.0773 -3.4460 8 6 2.9341 -0.6713 -3.4840 9 6 3.3737 0.0478 -4.6049 10 6 3.3463 1.4094 -4.5808 11 6 2.8886 2.0989 -3.4593 12 6 2.4544 1.4336 -2.3536 13 6 2.4665 0.0299 -2.3417 14 7 2.0198 -0.6925 1.1993 15 6 1.3824 -0.1610 2.4113 16 6 1.7795 -1.0240 3.6137 17 7 3.2471 -1.1042 3.6669 18 6 3.9145 -0.8244 4.8039 19 8 5.1312 -0.8005 4.8052 20 6 3.1757 -0.5494 6.0373 21 1 2.0975 -0.4907 6.0193 22 6 3.8672 -0.3621 7.2407 23 7 5.1718 -0.4334 7.2626 24 14 2.9245 -0.0105 8.8146 25 1 2.5951 -1.2908 9.4910 26 1 3.7589 0.8249 9.7153 27 1 1.6699 0.7143 8.4887 28 6 3.9673 -1.4982 2.4465 29 6 3.4840 -0.6165 1.2900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 2.4953 -3.7811 -2.2831 34 1 3.2846 -2.6504 -4.2932 35 1 3.7319 -0.4740 -5.4800 36 1 3.6844 1.9633 -5.4441 37 1 2.8738 3.1789 -3.4694 38 1 2.1029 1.9818 -1.4918 39 1 1.7118 0.8650 2.5754 40 1 0.2992 -0.1809 2.2912 41 1 1.3621 -2.0245 3.5002 42 1 1.4041 -0.5696 4.5306 43 1 5.6506 -0.3041 8.0962 44 1 3.7601 -2.5443 2.2206 45 1 5.0383 -1.3572 2.5916 46 1 3.9250 -0.9667 0.3568 47 1 3.7842 0.4160 1.4693 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364697324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:45 Heat of formation + Delta-G solvation = 41.864433 kcal Electronic energy + Delta-G solvation = -29392.772314 eV Core-core repulsion = 25540.819921 eV Total energy + Delta-G solvation = -3851.952393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.18305 -38.94576 -37.55484 -36.72708 -34.47720 -32.75611 -32.38300 -31.43749 -30.98249 -30.22085 -29.12606 -26.89655 -25.42441 -24.59557 -23.77779 -23.25447 -22.42461 -21.03169 -20.15016 -18.79571 -17.91002 -17.77718 -16.68265 -16.40896 -15.78410 -15.23858 -15.16053 -14.89433 -14.64243 -14.33417 -14.25604 -14.16150 -13.98981 -13.87023 -13.66604 -13.22145 -12.97934 -12.53065 -12.45615 -12.12095 -12.05732 -11.98639 -11.79184 -11.48459 -11.36668 -11.13947 -11.03504 -10.88824 -10.81515 -10.64630 -10.37460 -10.19203 -10.15334 -9.91842 -9.35967 -9.26878 -8.83557 -8.20823 -8.05863 -7.54210 -7.11315 -6.17065 -4.61689 0.17626 0.73586 1.71734 2.89676 3.15190 3.21885 3.24799 3.82772 3.98536 4.08561 4.12022 4.32907 4.51848 4.58566 4.59125 4.66792 4.74434 4.91038 4.94370 5.03326 5.13429 5.16240 5.35207 5.39355 5.52612 5.56586 5.58594 5.64222 5.72863 5.78229 5.80687 5.83501 5.86397 5.94816 5.97288 6.09572 6.15062 6.18453 6.21811 6.33798 6.47578 6.53459 6.61818 6.62496 6.80121 7.27398 7.37564 7.47910 7.67596 8.04147 8.17264 8.41243 9.04683 9.49739 10.60924 10.79774 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020860 B = 0.002590 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.962197 B =10806.705835 C =10867.022608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.127 3.873 3 H 0.055 0.945 4 C 0.188 3.812 5 N -0.452 5.452 6 C 0.085 3.915 7 C -0.169 4.169 8 C -0.023 4.023 9 C -0.115 4.115 10 C -0.100 4.100 11 C -0.124 4.124 12 C -0.086 4.086 13 C -0.108 4.108 14 N -0.512 5.512 15 C 0.036 3.964 16 C 0.130 3.870 17 N -0.644 5.644 18 C 0.560 3.440 19 O -0.580 6.580 20 C -0.544 4.544 21 H 0.073 0.927 22 C 0.087 3.913 23 N -0.769 5.769 24 Si 0.906 3.094 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.265 1.265 28 C 0.129 3.871 29 C 0.051 3.949 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.034 0.966 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.268 0.732 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.035 2.742 -23.017 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.073 0.927 4 C 0.035 3.965 5 N -0.159 5.159 6 C -0.059 4.059 7 C -0.189 4.189 8 C -0.028 4.028 9 C -0.133 4.133 10 C -0.119 4.119 11 C -0.142 4.142 12 C -0.106 4.106 13 C -0.110 4.110 14 N -0.237 5.237 15 C -0.092 4.092 16 C 0.005 3.995 17 N -0.382 5.382 18 C 0.366 3.634 19 O -0.463 6.463 20 C -0.580 4.580 21 H 0.091 0.909 22 C -0.132 4.132 23 N -0.398 5.398 24 Si 0.731 3.269 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.189 1.189 28 C 0.005 3.995 29 C -0.077 4.077 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.052 0.948 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.545 1.659 -22.260 23.901 hybrid contribution 0.112 1.417 -0.166 1.431 sum -8.433 3.075 -22.426 24.156 Atomic orbital electron populations 1.21915 0.92736 1.03567 1.01918 1.20524 0.96040 0.94112 0.87525 0.92732 1.21494 0.92278 0.89632 0.93063 1.67347 1.13236 1.08560 1.26742 1.22321 0.94653 1.00503 0.88449 1.21890 1.02962 0.93542 1.00462 1.18147 0.97222 0.93728 0.93720 1.20950 1.00461 0.94395 0.97453 1.20974 0.98222 0.94424 0.98274 1.20918 0.99447 1.00377 0.93467 1.21118 0.98053 0.92711 0.98681 1.18863 1.02240 0.94735 0.95201 1.61888 1.06102 1.55075 1.00683 1.22722 0.98976 0.97223 0.90285 1.21471 0.82878 0.98464 0.96663 1.48225 1.05061 1.74126 1.10809 1.18251 0.86976 0.76353 0.81841 1.90587 1.14181 1.57000 1.84494 1.20968 0.93723 1.51845 0.91501 0.90947 1.25732 0.94597 0.92880 1.00011 1.70023 1.07370 1.35480 1.26898 0.86400 0.80129 0.78869 0.81527 1.19720 1.20518 1.18879 1.21147 0.97886 0.96443 0.84040 1.22449 0.87102 0.98909 0.99282 0.90835 0.91136 0.92461 0.83024 0.84752 0.85275 0.85700 0.85616 0.84964 0.94784 0.90001 0.93086 0.88839 0.92147 0.93153 0.89864 0.91644 0.95120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.65 37.16 0.32 -1.23 16 2 C 0.13 1.65 2.14 -68.87 -0.15 1.50 16 3 H 0.06 0.67 6.00 -51.93 -0.31 0.36 16 4 C 0.19 2.50 4.46 -82.02 -0.37 2.13 16 5 N -0.45 -6.37 9.89 -9.39 -0.09 -6.47 16 6 C 0.08 0.98 11.07 -17.96 -0.20 0.78 16 7 C -0.17 -1.70 9.88 -39.40 -0.39 -2.09 16 8 C -0.02 -0.25 5.75 -106.81 -0.61 -0.87 16 9 C -0.11 -1.00 9.81 -39.56 -0.39 -1.39 16 10 C -0.10 -0.79 9.95 -39.89 -0.40 -1.19 16 11 C -0.12 -1.06 9.94 -39.91 -0.40 -1.45 16 12 C -0.09 -0.88 9.33 -39.52 -0.37 -1.24 16 13 C -0.11 -1.30 5.74 -106.86 -0.61 -1.91 16 14 N -0.51 -8.07 4.26 -227.73 -0.97 -9.04 16 15 C 0.04 0.57 5.20 -3.70 -0.02 0.55 16 16 C 0.13 2.50 6.47 -3.60 -0.02 2.47 16 17 N -0.64 -15.20 3.01 -174.12 -0.52 -15.72 16 18 C 0.56 16.24 7.62 -12.99 -0.10 16.14 16 19 O -0.58 -19.11 14.49 5.19 0.08 -19.04 16 20 C -0.54 -15.32 8.85 -35.63 -0.32 -15.63 16 21 H 0.07 1.85 5.75 -52.49 -0.30 1.55 16 22 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 23 N -0.77 -23.24 11.84 55.55 0.66 -22.58 16 24 Si 0.91 20.12 29.56 -169.99 -5.02 15.09 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 28 C 0.13 2.74 6.61 -3.60 -0.02 2.72 16 29 C 0.05 0.91 5.47 -3.70 -0.02 0.89 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.70 6.16 -51.93 -0.32 0.38 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 37 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.13 1.19 6.25 -52.48 -0.33 0.86 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.07 5.76 -51.93 -0.30 0.77 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.83 5.47 -51.93 -0.28 1.55 16 43 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 1.95 7.04 -51.93 -0.37 1.58 16 46 H 0.07 1.12 6.98 -51.93 -0.36 0.76 16 47 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -35.97 373.66 -10.76 -46.73 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.36 Total: 2.86 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -4.15 Total: 2.52 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.93 Total: -53.80 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.08 Total: -19.04 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.97 -10.76 -46.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364697324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.594 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds