Wall clock time and date at job start Tue Mar 31 2020 22:27:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.45891 * 2 1
4 4 C 1.53038 * 109.46502 * 240.02369 * 2 1 3
5 5 C 1.53196 * 109.31056 * 178.60988 * 4 2 1
6 6 N 1.46925 * 108.77404 * 54.63624 * 5 4 2
7 7 C 1.34780 * 120.63063 * 126.36337 * 6 5 4
8 8 O 1.21277 * 120.00044 * 174.84730 * 7 6 5
9 9 C 1.50699 * 119.99938 * 355.12630 * 7 6 5
10 10 N 1.46501 * 109.47323 * 179.72336 * 9 7 6
11 11 C 1.36376 * 125.96189 * 269.69104 * 10 9 7
12 12 O 1.35632 * 125.98612 * 0.03055 * 11 10 9
13 13 N 1.30906 * 108.02002 * 179.88369 * 11 10 9
14 14 N 1.40108 * 107.94263 * 0.37391 * 13 11 10
15 15 C 1.30909 * 107.93899 * 359.76084 * 14 13 11
16 16 O 1.35638 * 125.98730 * 179.97438 * 15 14 13
17 17 C 1.46929 * 118.74189 * 306.64065 * 6 5 4
18 18 H 1.08996 * 109.58257 * 293.56865 * 17 6 5
19 19 C 1.52997 * 109.58617 * 173.14483 * 17 6 5
20 20 N 1.46497 * 109.47414 * 73.28187 * 19 17 6
21 21 C 1.36931 * 120.00332 * 174.77546 * 20 19 17
22 22 H 1.08005 * 120.00064 * 359.97438 * 21 20 19
23 23 C 1.38814 * 120.00438 * 179.97438 * 21 20 19
24 24 N 1.31621 * 119.99862 * 359.97438 * 23 21 20
25 25 Si 1.86799 * 120.00119 * 180.02562 * 23 21 20
26 26 H 1.48495 * 109.47277 * 359.97438 * 25 23 21
27 27 H 1.48502 * 109.46860 * 120.00082 * 25 23 21
28 28 H 1.48500 * 109.46729 * 239.99547 * 25 23 21
29 29 C 1.52760 * 109.00567 * 53.30702 * 17 6 5
30 30 H 1.09003 * 109.46813 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47911 * 299.97335 * 1 2 3
32 32 H 1.08997 * 109.46941 * 59.98210 * 1 2 3
33 33 H 1.08997 * 109.49588 * 58.66424 * 4 2 1
34 34 H 1.08995 * 109.52456 * 298.57986 * 4 2 1
35 35 H 1.08999 * 109.59159 * 294.84707 * 5 4 2
36 36 H 1.08996 * 109.70105 * 174.49203 * 5 4 2
37 37 H 1.09000 * 109.47102 * 299.71910 * 9 7 6
38 38 H 1.08999 * 109.47277 * 59.71825 * 9 7 6
39 39 H 0.96693 * 113.99424 * 90.00469 * 12 11 10
40 40 H 0.96696 * 113.99412 * 270.02968 * 16 15 14
41 41 H 1.09004 * 109.46780 * 193.27908 * 19 17 6
42 42 H 1.08996 * 109.47119 * 313.27600 * 19 17 6
43 43 H 0.96999 * 119.99819 * 354.76970 * 20 19 17
44 44 H 0.96991 * 120.00274 * 180.02562 * 24 23 21
45 45 H 1.08998 * 109.56251 * 185.55156 * 29 17 6
46 46 H 1.09011 * 109.38448 * 65.51960 * 29 17 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0400 -0.7209 -1.2499
5 6 3.5715 -0.6886 -1.2640
6 7 4.0679 -1.2485 0.0004
7 6 4.9615 -2.2575 0.0007
8 8 5.4343 -2.6486 1.0468
9 6 5.3780 -2.8955 -1.2995
10 7 6.3550 -3.9542 -1.0331
11 6 7.7095 -3.8017 -0.9901
12 8 8.3876 -2.6435 -1.1858
13 7 8.2401 -4.9683 -0.7237
14 7 7.1992 -5.8979 -0.6004
15 6 6.0690 -5.2653 -0.7907
16 8 4.8306 -5.8174 -0.7538
17 6 3.5671 -0.6919 1.2646
18 1 3.9096 0.3373 1.3717
19 6 4.0830 -1.5316 2.4349
20 7 5.5090 -1.2636 2.6370
21 6 6.1667 -1.8223 3.7002
22 1 5.6341 -2.4602 4.3900
23 6 7.5180 -1.5688 3.8915
24 7 8.1673 -0.7918 3.0506
25 14 8.4153 -2.3315 5.3415
26 1 7.4675 -3.1584 6.1308
27 1 9.5231 -3.1863 4.8440
28 1 8.9687 -1.2556 6.2026
29 6 2.0399 -0.7204 1.2503
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3635 0.5134 0.8901
32 1 -0.3633 0.5141 -0.8898
33 1 1.6574 -0.2211 -2.1397
34 1 1.6980 -1.7558 -1.2385
35 1 3.9144 0.3409 -1.3673
36 1 3.9439 -1.2831 -2.0981
37 1 4.5039 -3.3231 -1.7908
38 1 5.8263 -2.1419 -1.9469
39 1 8.5373 -2.1341 -0.3777
40 1 4.5220 -6.1484 -1.6084
41 1 3.5327 -1.2714 3.3391
42 1 3.9398 -2.5893 2.2140
43 1 5.9873 -0.6905 2.0177
44 1 9.1116 -0.6150 3.1840
45 1 1.6571 -0.2203 2.1399
46 1 1.6974 -1.7552 1.2390
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001479579124.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:41
Heat of formation + Delta-G solvation = 34.673621 kcal
Electronic energy + Delta-G solvation = -32061.495235 eV
Core-core repulsion = 27798.381761 eV
Total energy + Delta-G solvation = -4263.113473 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.06209 -40.31429 -37.96712 -37.58176 -36.82610 -34.99933 -33.92042 -33.68714
-32.10219 -29.92427 -29.31561 -28.81786 -27.44192 -25.48081 -23.49603 -22.82119
-22.54942 -22.16574 -21.41517 -20.18255 -19.31181 -18.70228 -18.17789 -17.44327
-16.70146 -16.57418 -16.02349 -15.60594 -15.24983 -15.11994 -14.73466 -14.51008
-14.05579 -13.93997 -13.78759 -13.55338 -13.17213 -13.07638 -12.84561 -12.72046
-12.42759 -12.29414 -12.15911 -11.97303 -11.88294 -11.66078 -11.18939 -11.12946
-11.02118 -10.80236 -10.73072 -10.60467 -10.33955 -10.31781 -10.10356 -9.88089
-9.57178 -9.15769 -8.76483 -8.63529 -8.25459 -6.60179 -5.63325 -2.82569
1.66465 1.97463 2.50024 2.93524 3.11502 3.45652 3.53513 3.60502
3.61213 3.98957 4.43972 4.48725 4.51624 4.63219 4.71802 4.76070
4.85055 5.00501 5.11462 5.26025 5.39622 5.42823 5.44902 5.45631
5.54610 5.58484 5.63773 5.72683 5.75896 5.88832 5.91080 5.97228
6.00141 6.01929 6.27222 6.28644 6.42803 6.51161 6.78467 7.10310
7.19398 7.53053 7.65648 7.82808 8.13722 8.55097 8.60296 9.68460
10.25718 10.60832 11.60960
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.008108 B = 0.005888 C = 0.003933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3452.346443 B = 4753.990128 C = 7116.956378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.092 4.092
3 H 0.072 0.928
4 C -0.129 4.129
5 C 0.109 3.891
6 N -0.610 5.610
7 C 0.454 3.546
8 O -0.421 6.421
9 C 0.085 3.915
10 N -0.493 5.493
11 C 0.430 3.570
12 O -0.445 6.445
13 N -0.298 5.298
14 N -0.299 5.299
15 C 0.411 3.589
16 O -0.433 6.433
17 C 0.144 3.856
18 H 0.071 0.929
19 C 0.161 3.839
20 N -0.694 5.694
21 C -0.206 4.206
22 H 0.064 0.936
23 C -0.019 4.019
24 N -0.942 5.942
25 Si 0.899 3.101
26 H -0.283 1.283
27 H -0.293 1.293
28 H -0.295 1.295
29 C -0.122 4.122
30 H 0.053 0.947
31 H 0.055 0.945
32 H 0.052 0.948
33 H 0.071 0.929
34 H 0.066 0.934
35 H 0.068 0.932
36 H 0.076 0.924
37 H 0.112 0.888
38 H 0.117 0.883
39 H 0.427 0.573
40 H 0.403 0.597
41 H 0.018 0.982
42 H 0.033 0.967
43 H 0.378 0.622
44 H 0.249 0.751
45 H 0.074 0.926
46 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.709 1.527 -16.213 22.627
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.110 4.110
3 H 0.090 0.910
4 C -0.167 4.167
5 C -0.015 4.015
6 N -0.349 5.349
7 C 0.235 3.765
8 O -0.287 6.287
9 C -0.043 4.043
10 N -0.213 5.213
11 C 0.120 3.880
12 O -0.248 6.248
13 N -0.142 5.142
14 N -0.143 5.143
15 C 0.101 3.899
16 O -0.231 6.231
17 C 0.041 3.959
18 H 0.089 0.911
19 C 0.034 3.966
20 N -0.337 5.337
21 C -0.338 4.338
22 H 0.082 0.918
23 C -0.214 4.214
24 N -0.593 5.593
25 Si 0.732 3.268
26 H -0.209 1.209
27 H -0.220 1.220
28 H -0.223 1.223
29 C -0.160 4.160
30 H 0.072 0.928
31 H 0.074 0.926
32 H 0.071 0.929
33 H 0.090 0.910
34 H 0.085 0.915
35 H 0.087 0.913
36 H 0.094 0.906
37 H 0.130 0.870
38 H 0.135 0.865
39 H 0.288 0.712
40 H 0.260 0.740
41 H 0.036 0.964
42 H 0.051 0.949
43 H 0.212 0.788
44 H 0.059 0.941
45 H 0.093 0.907
46 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -14.307 0.020 -15.118 20.815
hybrid contribution -0.506 1.122 0.216 1.249
sum -14.813 1.142 -14.903 21.043
Atomic orbital electron populations
1.21813 0.95147 1.01736 1.01566 1.21110 0.95508 0.99661 0.94763
0.91006 1.21981 0.95161 1.01356 0.98203 1.21657 0.94251 0.99478
0.86078 1.47855 1.44584 1.36013 1.06454 1.20511 0.81650 0.83208
0.91087 1.91343 1.49693 1.58349 1.29280 1.21753 0.93250 0.90907
0.98363 1.46545 1.07394 1.09237 1.58124 1.21258 0.78704 0.89777
0.98252 1.84746 1.71761 1.29903 1.38389 1.78342 1.18111 0.97135
1.20628 1.78251 0.94043 1.20242 1.21809 1.21123 0.87945 0.80732
1.00114 1.85038 1.25293 1.76602 1.36210 1.21414 0.92479 0.98148
0.83821 0.91114 1.20836 0.87313 0.96607 0.91873 1.42170 1.03638
1.57202 1.30701 1.19190 0.91908 1.21414 1.01270 0.91836 1.24543
0.96491 1.01154 0.99174 1.69633 1.08791 1.42499 1.38385 0.86196
0.79928 0.78344 0.82329 1.20873 1.22041 1.22250 1.21911 0.95114
1.01225 0.97797 0.92778 0.92595 0.92867 0.91004 0.91538 0.91340
0.90596 0.86971 0.86510 0.71202 0.74020 0.96392 0.94923 0.78805
0.94102 0.90698 0.91559
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.06 9.19 37.16 0.34 -0.71 16
2 C -0.09 -0.78 2.68 -90.58 -0.24 -1.03 16
3 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
4 C -0.13 -0.94 5.36 -26.61 -0.14 -1.08 16
5 C 0.11 0.92 6.35 -3.71 -0.02 0.90 16
6 N -0.61 -7.99 2.98 -165.47 -0.49 -8.49 16
7 C 0.45 7.19 7.39 -10.98 -0.08 7.11 16
8 O -0.42 -9.24 10.16 5.56 0.06 -9.18 16
9 C 0.09 1.01 4.85 -5.19 -0.03 0.98 16
10 N -0.49 -7.65 2.25 -121.35 -0.27 -7.93 16
11 C 0.43 7.71 9.15 -88.81 -0.81 6.90 16
12 O -0.45 -7.11 13.58 -18.59 -0.25 -7.36 16
13 N -0.30 -6.10 12.72 29.66 0.38 -5.73 16
14 N -0.30 -5.85 12.72 29.66 0.38 -5.47 16
15 C 0.41 6.70 9.15 -88.81 -0.81 5.88 16
16 O -0.43 -5.37 13.58 -18.61 -0.25 -5.63 16
17 C 0.14 2.15 2.89 -67.82 -0.20 1.96 16
18 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
19 C 0.16 3.29 4.89 -4.04 -0.02 3.27 16
20 N -0.69 -17.60 3.20 -59.91 -0.19 -17.79 16
21 C -0.21 -5.98 9.73 -15.06 -0.15 -6.13 16
22 H 0.06 1.87 7.83 -52.48 -0.41 1.46 16
23 C -0.02 -0.58 5.50 -17.43 -0.10 -0.67 16
24 N -0.94 -28.45 13.06 55.49 0.72 -27.73 16
25 Si 0.90 23.93 29.55 -169.99 -5.02 18.90 16
26 H -0.28 -7.41 7.11 56.52 0.40 -7.01 16
27 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16
28 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16
29 C -0.12 -1.38 4.59 -26.83 -0.12 -1.50 16
30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16
31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
36 H 0.08 0.47 5.92 -51.93 -0.31 0.16 16
37 H 0.11 0.90 7.91 -51.93 -0.41 0.49 16
38 H 0.12 1.12 7.72 -51.93 -0.40 0.72 16
39 H 0.43 6.56 9.06 45.56 0.41 6.98 16
40 H 0.40 2.22 9.06 45.56 0.41 2.63 16
41 H 0.02 0.38 8.08 -51.93 -0.42 -0.04 16
42 H 0.03 0.75 6.36 -51.93 -0.33 0.42 16
43 H 0.38 10.08 7.23 -40.82 -0.30 9.78 16
44 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16
45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
46 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16
LS Contribution 375.74 15.07 5.66 5.66
Total: -1.00 -38.66 375.74 -6.78 -45.44
By element:
Atomic # 1 Polarization: 14.52 SS G_CDS: -5.11 Total: 9.41 kcal
Atomic # 6 Polarization: 18.26 SS G_CDS: -2.38 Total: 15.88 kcal
Atomic # 7 Polarization: -73.65 SS G_CDS: 0.52 Total: -73.13 kcal
Atomic # 8 Polarization: -21.72 SS G_CDS: -0.45 Total: -22.16 kcal
Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.90 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -38.66 -6.78 -45.44 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479579124.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.115 kcal
(2) G-P(sol) polarization free energy of solvation -38.660 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.455 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.441 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.674 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds