Wall clock time and date at job start Tue Mar 31 2020 22:27:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09006 * 109.45891 * 2 1
4 4 C 1.53038 * 109.46502 * 240.02369 * 2 1 3
5 5 C 1.53196 * 109.31056 * 178.60988 * 4 2 1
6 6 N 1.46925 * 108.77404 * 54.63624 * 5 4 2
7 7 C 1.34780 * 120.63063 * 126.36337 * 6 5 4
8 8 O 1.21277 * 120.00044 * 174.84730 * 7 6 5
9 9 C 1.50699 * 119.99938 * 355.12630 * 7 6 5
10 10 N 1.46501 * 109.47323 * 179.72336 * 9 7 6
11 11 C 1.36376 * 125.96189 * 269.69104 * 10 9 7
12 12 O 1.35632 * 125.98612 * 0.03055 * 11 10 9
13 13 N 1.30906 * 108.02002 * 179.88369 * 11 10 9
14 14 N 1.40108 * 107.94263 * 0.37391 * 13 11 10
15 15 C 1.30909 * 107.93899 * 359.76084 * 14 13 11
16 16 O 1.35638 * 125.98730 * 179.97438 * 15 14 13
17 17 C 1.46929 * 118.74189 * 306.64065 * 6 5 4
18 18 H 1.08996 * 109.58257 * 293.56865 * 17 6 5
19 19 C 1.52997 * 109.58617 * 173.14483 * 17 6 5
20 20 N 1.46497 * 109.47414 * 73.28187 * 19 17 6
21 21 C 1.36931 * 120.00332 * 174.77546 * 20 19 17
22 22 H 1.08005 * 120.00064 * 359.97438 * 21 20 19
23 23 C 1.38814 * 120.00438 * 179.97438 * 21 20 19
24 24 N 1.31621 * 119.99862 * 359.97438 * 23 21 20
25 25 Si 1.86799 * 120.00119 * 180.02562 * 23 21 20
26 26 H 1.48495 * 109.47277 * 359.97438 * 25 23 21
27 27 H 1.48502 * 109.46860 * 120.00082 * 25 23 21
28 28 H 1.48500 * 109.46729 * 239.99547 * 25 23 21
29 29 C 1.52760 * 109.00567 * 53.30702 * 17 6 5
30 30 H 1.09003 * 109.46813 * 179.97438 * 1 2 3
31 31 H 1.08994 * 109.47911 * 299.97335 * 1 2 3
32 32 H 1.08997 * 109.46941 * 59.98210 * 1 2 3
33 33 H 1.08997 * 109.49588 * 58.66424 * 4 2 1
34 34 H 1.08995 * 109.52456 * 298.57986 * 4 2 1
35 35 H 1.08999 * 109.59159 * 294.84707 * 5 4 2
36 36 H 1.08996 * 109.70105 * 174.49203 * 5 4 2
37 37 H 1.09000 * 109.47102 * 299.71910 * 9 7 6
38 38 H 1.08999 * 109.47277 * 59.71825 * 9 7 6
39 39 H 0.96693 * 113.99424 * 90.00469 * 12 11 10
40 40 H 0.96696 * 113.99412 * 270.02968 * 16 15 14
41 41 H 1.09004 * 109.46780 * 193.27908 * 19 17 6
42 42 H 1.08996 * 109.47119 * 313.27600 * 19 17 6
43 43 H 0.96999 * 119.99819 * 354.76970 * 20 19 17
44 44 H 0.96991 * 120.00274 * 180.02562 * 24 23 21
45 45 H 1.08998 * 109.56251 * 185.55156 * 29 17 6
46 46 H 1.09011 * 109.38448 * 65.51960 * 29 17 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0400 -0.7209 -1.2499
5 6 3.5715 -0.6886 -1.2640
6 7 4.0679 -1.2485 0.0004
7 6 4.9615 -2.2575 0.0007
8 8 5.4343 -2.6486 1.0468
9 6 5.3780 -2.8955 -1.2995
10 7 6.3550 -3.9542 -1.0331
11 6 7.7095 -3.8017 -0.9901
12 8 8.3876 -2.6435 -1.1858
13 7 8.2401 -4.9683 -0.7237
14 7 7.1992 -5.8979 -0.6004
15 6 6.0690 -5.2653 -0.7907
16 8 4.8306 -5.8174 -0.7538
17 6 3.5671 -0.6919 1.2646
18 1 3.9096 0.3373 1.3717
19 6 4.0830 -1.5316 2.4349
20 7 5.5090 -1.2636 2.6370
21 6 6.1667 -1.8223 3.7002
22 1 5.6341 -2.4602 4.3900
23 6 7.5180 -1.5688 3.8915
24 7 8.1673 -0.7918 3.0506
25 14 8.4153 -2.3315 5.3415
26 1 7.4675 -3.1584 6.1308
27 1 9.5231 -3.1863 4.8440
28 1 8.9687 -1.2556 6.2026
29 6 2.0399 -0.7204 1.2503
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3635 0.5134 0.8901
32 1 -0.3633 0.5141 -0.8898
33 1 1.6574 -0.2211 -2.1397
34 1 1.6980 -1.7558 -1.2385
35 1 3.9144 0.3409 -1.3673
36 1 3.9439 -1.2831 -2.0981
37 1 4.5039 -3.3231 -1.7908
38 1 5.8263 -2.1419 -1.9469
39 1 8.5373 -2.1341 -0.3777
40 1 4.5220 -6.1484 -1.6084
41 1 3.5327 -1.2714 3.3391
42 1 3.9398 -2.5893 2.2140
43 1 5.9873 -0.6905 2.0177
44 1 9.1116 -0.6150 3.1840
45 1 1.6571 -0.2203 2.1399
46 1 1.6974 -1.7552 1.2390
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001479579124.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:27:40
Heat of formation + Delta-G solvation = -0.516709 kcal
Electronic energy + Delta-G solvation = -32063.021202 eV
Core-core repulsion = 27798.381761 eV
Total energy + Delta-G solvation = -4264.639441 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 339.174 amu
Computer time = 1.15 seconds
Orbital eigenvalues (eV)
-43.32480 -41.46434 -39.11772 -38.61449 -38.01849 -36.61937 -35.22205 -34.79556
-33.71464 -31.56267 -30.65222 -29.76454 -28.41645 -27.14923 -24.55326 -24.21567
-23.82563 -23.49968 -22.67601 -21.12933 -20.42904 -19.81428 -19.42880 -19.15550
-18.14655 -17.74658 -17.21317 -16.80941 -16.69018 -16.37811 -16.09029 -15.51251
-15.43628 -15.12084 -14.87926 -14.72979 -14.58712 -14.32147 -14.07261 -13.89593
-13.81162 -13.35666 -13.28863 -13.16461 -12.89269 -12.81830 -12.66508 -12.55023
-12.49579 -12.14569 -12.04548 -11.89522 -11.70053 -11.57922 -11.46022 -11.28937
-11.16441 -10.88620 -10.50789 -9.96369 -9.45457 -8.65839 -7.88689 -5.04445
0.38658 0.83973 1.17881 1.37891 1.42178 1.48135 1.78584 2.03946
2.24873 2.56968 2.88398 3.43822 3.46393 3.51337 3.76120 3.85721
3.94003 4.01490 4.11205 4.18890 4.28458 4.33234 4.34569 4.47881
4.58236 4.69285 4.70412 4.80201 4.84365 4.94764 4.97318 5.03559
5.13702 5.17776 5.21213 5.27975 5.34461 5.44518 5.49844 5.60289
5.78963 6.13969 6.34313 6.43141 6.57219 6.81771 7.40323 7.45319
8.20984 8.45292 9.35432
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.008108 B = 0.005888 C = 0.003933
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3452.346443 B = 4753.990128 C = 7116.956378
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.089 4.089
3 H 0.073 0.927
4 C -0.122 4.122
5 C 0.100 3.900
6 N -0.603 5.603
7 C 0.453 3.547
8 O -0.496 6.496
9 C 0.087 3.913
10 N -0.488 5.488
11 C 0.425 3.575
12 O -0.438 6.438
13 N -0.343 5.343
14 N -0.344 5.344
15 C 0.428 3.572
16 O -0.431 6.431
17 C 0.153 3.847
18 H 0.061 0.939
19 C 0.166 3.834
20 N -0.696 5.696
21 C -0.207 4.207
22 H 0.051 0.949
23 C -0.072 4.072
24 N -0.963 5.963
25 Si 0.950 3.050
26 H -0.279 1.279
27 H -0.303 1.303
28 H -0.289 1.289
29 C -0.113 4.113
30 H 0.053 0.947
31 H 0.051 0.949
32 H 0.069 0.931
33 H 0.102 0.898
34 H 0.068 0.932
35 H 0.076 0.924
36 H 0.109 0.891
37 H 0.162 0.838
38 H 0.148 0.852
39 H 0.427 0.573
40 H 0.435 0.565
41 H 0.009 0.991
42 H 0.012 0.988
43 H 0.370 0.630
44 H 0.245 0.755
45 H 0.072 0.928
46 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.437 2.352 -18.895 26.504
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.107 4.107
3 H 0.091 0.909
4 C -0.160 4.160
5 C -0.021 4.021
6 N -0.341 5.341
7 C 0.237 3.763
8 O -0.368 6.368
9 C -0.038 4.038
10 N -0.207 5.207
11 C 0.113 3.887
12 O -0.241 6.241
13 N -0.187 5.187
14 N -0.189 5.189
15 C 0.117 3.883
16 O -0.235 6.235
17 C 0.049 3.951
18 H 0.079 0.921
19 C 0.039 3.961
20 N -0.337 5.337
21 C -0.340 4.340
22 H 0.069 0.931
23 C -0.264 4.264
24 N -0.616 5.616
25 Si 0.782 3.218
26 H -0.204 1.204
27 H -0.232 1.232
28 H -0.216 1.216
29 C -0.151 4.151
30 H 0.072 0.928
31 H 0.070 0.930
32 H 0.088 0.912
33 H 0.120 0.880
34 H 0.087 0.913
35 H 0.094 0.906
36 H 0.127 0.873
37 H 0.180 0.820
38 H 0.165 0.835
39 H 0.289 0.711
40 H 0.297 0.703
41 H 0.026 0.974
42 H 0.030 0.970
43 H 0.202 0.798
44 H 0.054 0.946
45 H 0.091 0.909
46 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -17.138 0.866 -17.866 24.772
hybrid contribution 0.152 0.862 0.988 1.320
sum -16.986 1.729 -16.878 24.008
Atomic orbital electron populations
1.21770 0.93877 1.01967 1.02250 1.21103 0.96476 0.99395 0.93754
0.90880 1.21971 0.93834 1.01711 0.98506 1.22080 0.95367 1.00313
0.84379 1.47977 1.43504 1.35016 1.07554 1.21247 0.80763 0.82592
0.91707 1.91323 1.52281 1.61047 1.32099 1.22112 0.94423 0.90872
0.96437 1.46571 1.07030 1.09716 1.57392 1.21321 0.79868 0.89659
0.97804 1.84731 1.71820 1.29275 1.38258 1.78187 1.19742 0.98492
1.22276 1.78120 0.95140 1.21196 1.24402 1.21187 0.88464 0.80981
0.97692 1.85012 1.23121 1.76377 1.38952 1.21164 0.94753 0.96187
0.82987 0.92096 1.20832 0.84816 0.96429 0.93999 1.42156 1.05325
1.56648 1.29522 1.19373 0.92318 1.20490 1.01784 0.93096 1.25102
0.97223 1.02532 1.01560 1.69730 1.08540 1.43749 1.39565 0.85385
0.78533 0.77606 0.80254 1.20419 1.23164 1.21585 1.21839 0.92015
1.01478 0.99805 0.92763 0.93028 0.91159 0.87960 0.91283 0.90550
0.87282 0.82022 0.83460 0.71108 0.70257 0.97353 0.97014 0.79778
0.94586 0.90894 0.92071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.55 9.19 71.98 0.66 -0.89 16
2 C -0.09 -1.20 2.68 -10.77 -0.03 -1.23 16
3 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16
4 C -0.12 -1.16 5.36 30.67 0.16 -1.00 16
5 C 0.10 1.23 6.35 86.36 0.55 1.78 16
6 N -0.60 -14.41 2.98 -795.83 -2.37 -16.78 16
7 C 0.45 13.61 7.39 87.66 0.65 14.26 16
8 O -0.50 -22.05 10.16 -3.02 -0.03 -22.08 16
9 C 0.09 1.75 4.85 85.63 0.41 2.17 16
10 N -0.49 -14.40 2.25 -759.25 -1.71 -16.10 16
11 C 0.42 15.23 9.15 179.71 1.65 16.87 16
12 O -0.44 -13.96 13.58 -89.45 -1.21 -15.17 16
13 N -0.34 -14.40 12.72 -173.65 -2.21 -16.60 16
14 N -0.34 -13.62 12.72 -173.65 -2.21 -15.83 16
15 C 0.43 13.46 9.15 179.72 1.65 15.11 16
16 O -0.43 -9.66 13.58 -89.51 -1.22 -10.87 16
17 C 0.15 4.45 2.89 44.83 0.13 4.58 16
18 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
19 C 0.17 6.96 4.89 86.38 0.42 7.38 16
20 N -0.70 -36.39 3.20 -343.46 -1.10 -37.49 16
21 C -0.21 -12.40 9.73 84.04 0.82 -11.58 16
22 H 0.05 3.11 7.83 -2.91 -0.02 3.09 16
23 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16
24 N -0.96 -59.63 13.06 21.65 0.28 -59.35 16
25 Si 0.95 50.54 29.55 68.60 2.03 52.57 16
26 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16
27 H -0.30 -16.55 7.11 99.48 0.71 -15.84 16
28 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16
29 C -0.11 -2.36 4.59 30.53 0.14 -2.22 16
30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16
32 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16
33 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16
34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16
35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
36 H 0.11 0.66 5.92 -2.39 -0.01 0.65 16
37 H 0.16 1.65 7.91 -2.39 -0.02 1.63 16
38 H 0.15 2.14 7.72 -2.39 -0.02 2.12 16
39 H 0.43 13.56 9.06 -74.06 -0.67 12.89 16
40 H 0.43 3.21 9.06 -74.06 -0.67 2.54 16
41 H 0.01 0.37 8.08 -2.38 -0.02 0.35 16
42 H 0.01 0.57 6.36 -2.39 -0.02 0.55 16
43 H 0.37 20.28 7.23 -92.71 -0.67 19.61 16
44 H 0.25 14.84 8.31 -92.72 -0.77 14.07 16
45 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
46 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16
Total: -1.00 -90.16 375.74 -3.03 -93.19
By element:
Atomic # 1 Polarization: 24.19 SS G_CDS: -0.97 Total: 23.22 kcal
Atomic # 6 Polarization: 33.61 SS G_CDS: 7.68 Total: 41.29 kcal
Atomic # 7 Polarization: -152.83 SS G_CDS: -9.31 Total: -162.14 kcal
Atomic # 8 Polarization: -45.66 SS G_CDS: -2.46 Total: -48.12 kcal
Atomic # 14 Polarization: 50.54 SS G_CDS: 2.03 Total: 52.57 kcal
Total: -90.16 -3.03 -93.19 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001479579124.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.673 kcal
(2) G-P(sol) polarization free energy of solvation -90.157 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.516 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.190 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.15 seconds