Wall clock time and date at job start Tue Mar 31 2020 23:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35359 * 116.99605 * 2 1 4 4 C 1.38986 * 126.40607 * 95.31500 * 3 2 1 5 5 C 1.46922 * 126.50046 * 359.97438 * 4 3 2 6 6 O 1.21661 * 119.99867 * 0.02562 * 5 4 3 7 7 N 1.34783 * 120.00044 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99471 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46657 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.47011 * 64.99957 * 9 8 7 11 11 C 1.52998 * 109.46732 * 184.99864 * 9 8 7 12 12 N 1.46898 * 109.47113 * 304.99756 * 9 8 7 13 13 C 1.46903 * 110.99934 * 154.99741 * 12 9 8 14 14 C 1.50697 * 109.47131 * 179.97438 * 13 12 9 15 15 O 1.21293 * 120.00331 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99777 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99655 * 180.02562 * 16 14 13 18 18 H 1.07992 * 120.00291 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99350 * 180.02562 * 17 16 14 20 20 N 1.31405 * 120.00771 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99357 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47227 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47080 * 120.00112 * 21 19 17 24 24 H 1.48497 * 109.47113 * 240.00000 * 21 19 17 25 25 C 1.41468 * 107.00756 * 180.25872 * 4 3 2 26 26 N 1.30320 * 108.13210 * 359.55276 * 25 4 3 27 27 N 1.34662 * 126.40169 * 275.30664 * 3 2 1 28 28 C 1.46498 * 125.74175 * 359.97438 * 27 3 2 29 29 H 1.09001 * 109.46708 * 184.89581 * 1 2 3 30 30 H 1.08994 * 109.47582 * 304.89800 * 1 2 3 31 31 H 1.08999 * 109.46905 * 64.90557 * 1 2 3 32 32 H 0.96989 * 120.00034 * 0.02562 * 7 5 4 33 33 H 1.09002 * 109.47305 * 300.00145 * 8 7 5 34 34 H 1.09003 * 109.47271 * 60.00381 * 8 7 5 35 35 H 1.09004 * 109.46621 * 179.97438 * 11 9 8 36 36 H 1.08994 * 109.47642 * 300.00144 * 11 9 8 37 37 H 1.09000 * 109.47113 * 60.00735 * 11 9 8 38 38 H 1.00898 * 110.99911 * 31.05462 * 12 9 8 39 39 H 1.08996 * 109.47419 * 300.00988 * 13 12 9 40 40 H 1.09010 * 109.46680 * 60.00247 * 13 12 9 41 41 H 0.96999 * 120.00409 * 0.02562 * 16 14 13 42 42 H 0.96990 * 120.00451 * 180.02562 * 20 19 17 43 43 H 1.07998 * 125.93104 * 179.73182 * 25 4 3 44 44 H 1.08997 * 109.47659 * 94.33248 * 28 27 3 45 45 H 1.08999 * 109.46736 * 214.33180 * 28 27 3 46 46 H 1.08997 * 109.47211 * 334.32839 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 6 2.5102 1.8941 1.1138 5 6 2.4296 1.4505 2.5121 6 8 1.9137 0.3824 2.7827 7 7 2.9272 2.2268 3.4952 8 6 2.8463 1.7846 4.8895 9 6 3.4785 2.8417 5.7972 10 1 2.8910 3.7586 5.7509 11 6 3.5066 2.3262 7.2374 12 7 4.8501 3.1156 5.3482 13 6 5.2782 4.4608 5.7545 14 6 6.6868 4.7050 5.2780 15 8 7.2761 3.8433 4.6603 16 7 7.2920 5.8808 5.5383 17 6 8.5734 6.1031 5.1043 18 1 9.0977 5.3362 4.5536 19 6 9.1973 7.3152 5.3731 20 7 8.5596 8.2482 6.0436 21 14 10.9430 7.6184 4.7812 22 1 11.4351 6.4195 4.0561 23 1 10.9601 8.7905 3.8696 24 1 11.8218 7.8859 5.9479 25 6 3.0717 3.1055 0.6465 26 7 2.9566 3.1319 -0.6513 27 7 2.3168 1.9637 -1.0792 28 6 1.9985 1.6217 -2.4677 29 1 -0.3633 -1.0239 0.0877 30 1 -0.3634 0.5879 0.8428 31 1 -0.3633 0.4358 -0.9307 32 1 3.3381 3.0784 3.2795 33 1 1.8012 1.6461 5.1667 34 1 3.3804 0.8412 5.0031 35 1 3.9574 3.0791 7.8840 36 1 2.4889 2.1228 7.5706 37 1 4.0941 1.4092 7.2837 38 1 4.9346 2.9954 4.3500 39 1 4.6116 5.2026 5.3146 40 1 5.2436 4.5404 6.8411 41 1 6.8209 6.5698 6.0326 42 1 8.9951 9.0944 6.2309 43 1 3.5205 3.8737 1.2588 44 1 1.0418 2.0665 -2.7414 45 1 2.7789 2.0059 -3.1245 46 1 1.9380 0.5383 -2.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480581146.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:07 Heat of formation + Delta-G solvation = -49.698752 kcal Electronic energy + Delta-G solvation = -29165.297669 eV Core-core repulsion = 24898.525535 eV Total energy + Delta-G solvation = -4266.772134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.68637 -40.54182 -40.01452 -39.25292 -38.07674 -35.94447 -34.98170 -34.34041 -33.24279 -32.08033 -31.05643 -28.81984 -28.09321 -27.78555 -26.88528 -25.62456 -23.72360 -22.18593 -21.58629 -21.30934 -21.05986 -19.90794 -19.48467 -18.17882 -17.70486 -17.55858 -17.16062 -16.87713 -16.67492 -16.39487 -16.28810 -15.85168 -15.73965 -15.68256 -15.37978 -15.13082 -14.72987 -14.67625 -14.24335 -13.76406 -13.65800 -13.63515 -13.47814 -13.40755 -13.22754 -12.94915 -12.90337 -12.75963 -12.54284 -12.44811 -12.36724 -12.10464 -11.82952 -11.48571 -11.36987 -10.99529 -10.56758 -10.30234 -10.20769 -9.98006 -9.73698 -9.31681 -8.44408 -5.92249 0.09271 0.99641 1.03789 1.37830 1.43456 1.57108 2.08885 2.14377 2.30260 2.31430 2.53401 2.91858 3.23569 3.32575 3.53443 3.75242 3.86126 3.96472 4.17088 4.22475 4.27684 4.29141 4.30859 4.32160 4.44496 4.50329 4.53086 4.58881 4.64717 4.65280 4.69534 4.89407 4.98285 5.01510 5.10221 5.25896 5.36028 5.44199 5.51426 5.92579 6.13693 6.21572 6.31952 6.40254 6.49730 6.63627 7.16288 7.22315 7.60436 8.16101 8.73134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.002470 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.218992 B =11331.429948 C =13240.929371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.313 6.313 3 C 0.319 3.681 4 C -0.323 4.323 5 C 0.597 3.403 6 O -0.576 6.576 7 N -0.719 5.719 8 C 0.127 3.873 9 C 0.079 3.921 10 H 0.072 0.928 11 C -0.137 4.137 12 N -0.681 5.681 13 C 0.064 3.936 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.330 4.330 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.272 1.272 25 C 0.097 3.903 26 N -0.295 5.295 27 N -0.367 5.367 28 C 0.081 3.919 29 H 0.125 0.875 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.343 0.657 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.215 0.785 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.515 -9.508 -10.678 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.223 6.223 3 C 0.143 3.857 4 C -0.339 4.339 5 C 0.386 3.614 6 O -0.457 6.457 7 N -0.371 5.371 8 C 0.003 3.997 9 C -0.031 4.031 10 H 0.090 0.910 11 C -0.195 4.195 12 N -0.317 5.317 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.211 5.211 17 C -0.460 4.460 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.200 1.200 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.090 4.090 26 N -0.118 5.118 27 N -0.155 5.155 28 C -0.058 4.058 29 H 0.143 0.857 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.241 0.759 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.164 0.836 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.232 0.768 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.914 -10.590 -11.476 26.100 hybrid contribution 0.362 1.132 0.031 1.189 sum -20.552 -9.458 -11.444 25.354 Atomic orbital electron populations 1.23368 0.74783 1.05935 1.01840 1.86005 1.23239 1.20033 1.92988 1.19445 0.94822 0.84544 0.86865 1.20061 1.20729 0.99992 0.93144 1.17094 0.77136 0.83154 0.84012 1.90761 1.46964 1.23569 1.84407 1.45708 1.61281 1.23399 1.06751 1.21554 1.01531 0.97647 0.78962 1.21864 0.87380 0.97767 0.96065 0.91043 1.21747 1.02617 1.01558 0.93601 1.60115 1.23667 1.26999 1.20910 1.21627 0.91796 0.90873 1.02517 1.20922 0.90097 0.82403 0.84045 1.90513 1.68236 1.45789 1.46419 1.41928 1.14006 1.14713 1.50406 1.19662 0.91322 1.00810 1.34164 0.90502 1.25978 1.03613 0.94783 0.96821 1.69661 1.39482 1.06694 1.40234 0.84924 0.77412 0.78148 0.78183 1.19965 1.19562 1.19761 1.24298 0.96261 0.96426 0.92043 1.77234 1.18703 1.02091 1.13729 1.49310 1.44270 1.13737 1.08230 1.22409 1.04269 1.03698 0.75417 0.85683 0.93476 0.90854 0.75906 0.89471 0.92146 0.92219 0.89964 0.92887 0.83648 0.90685 0.87711 0.76908 0.91358 0.76832 0.87984 0.87672 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.13 113.37 1.26 1.74 16 2 O -0.31 -7.00 9.74 -79.56 -0.78 -7.78 16 3 C 0.32 7.57 6.98 84.44 0.59 8.16 16 4 C -0.32 -8.25 6.15 -20.03 -0.12 -8.38 16 5 C 0.60 16.66 7.80 86.52 0.67 17.33 16 6 O -0.58 -19.50 16.38 2.71 0.04 -19.46 16 7 N -0.72 -16.55 4.98 -466.83 -2.32 -18.87 16 8 C 0.13 2.80 5.31 86.38 0.46 3.26 16 9 C 0.08 1.65 2.81 44.92 0.13 1.78 16 10 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 11 C -0.14 -2.67 9.41 71.98 0.68 -1.99 16 12 N -0.68 -20.05 5.93 -495.57 -2.94 -22.98 16 13 C 0.06 2.02 5.96 85.56 0.51 2.53 16 14 C 0.44 20.12 7.82 87.66 0.69 20.80 16 15 O -0.62 -34.01 15.78 -3.07 -0.05 -34.06 16 16 N -0.57 -28.64 5.29 -306.98 -1.62 -30.26 16 17 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 21 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 C 0.10 2.17 11.50 85.71 0.99 3.15 16 26 N -0.29 -6.95 12.48 -56.22 -0.70 -7.65 16 27 N -0.37 -7.40 3.99 -479.81 -1.91 -9.32 16 28 C 0.08 0.82 11.41 127.77 1.46 2.28 16 29 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.40 8.06 6.32 -92.72 -0.59 7.47 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.34 10.65 6.41 -89.70 -0.58 10.08 16 39 H 0.08 1.94 8.05 -2.39 -0.02 1.92 16 40 H 0.10 3.01 7.44 -2.38 -0.02 2.99 16 41 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 42 H 0.28 13.80 8.31 -92.72 -0.77 13.03 16 43 H 0.22 3.59 7.50 -2.91 -0.02 3.57 16 44 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 0.77 8.03 -2.39 -0.02 0.76 16 Total: -1.00 -79.36 395.58 -0.24 -79.60 By element: Atomic # 1 Polarization: 42.72 SS G_CDS: -0.85 Total: 41.87 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 8.58 Total: 32.76 kcal Atomic # 7 Polarization: -128.58 SS G_CDS: -9.22 Total: -137.80 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -0.78 Total: -61.30 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -79.36 -0.24 -79.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480581146.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.899 kcal (2) G-P(sol) polarization free energy of solvation -79.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds