Wall clock time and date at job start Tue Mar 31 2020 23:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35344 * 117.00188 * 2 1 4 4 C 1.38993 * 126.40909 * 95.31401 * 3 2 1 5 5 C 1.46927 * 126.49450 * 359.97438 * 4 3 2 6 6 O 1.21662 * 119.99753 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00007 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00216 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.47058 * 295.00354 * 9 8 7 11 11 C 1.53001 * 109.47061 * 175.00580 * 9 8 7 12 12 N 1.46893 * 109.47125 * 55.00657 * 9 8 7 13 13 C 1.46901 * 111.00208 * 204.99808 * 12 9 8 14 14 C 1.50700 * 109.47171 * 179.97438 * 13 12 9 15 15 O 1.21289 * 120.00293 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99563 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99644 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00315 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99818 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00153 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47309 * 120.00000 * 21 19 17 24 24 H 1.48499 * 109.47324 * 240.00280 * 21 19 17 25 25 C 1.41463 * 107.00735 * 180.26384 * 4 3 2 26 26 N 1.30312 * 108.13686 * 359.55630 * 25 4 3 27 27 N 1.34669 * 126.40369 * 275.31516 * 3 2 1 28 28 C 1.46497 * 125.73907 * 359.96267 * 27 3 2 29 29 H 1.09004 * 109.46780 * 64.90230 * 1 2 3 30 30 H 1.08999 * 109.47091 * 184.89531 * 1 2 3 31 31 H 1.08998 * 109.47105 * 304.90014 * 1 2 3 32 32 H 0.97003 * 120.00101 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.46446 * 60.00207 * 8 7 5 34 34 H 1.08994 * 109.47426 * 300.00535 * 8 7 5 35 35 H 1.09000 * 109.47334 * 59.99540 * 11 9 8 36 36 H 1.08996 * 109.47225 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46559 * 300.00109 * 11 9 8 38 38 H 1.00905 * 110.99933 * 328.94711 * 12 9 8 39 39 H 1.08997 * 109.46968 * 299.99809 * 13 12 9 40 40 H 1.09001 * 109.47285 * 59.99794 * 13 12 9 41 41 H 0.96999 * 120.00242 * 0.02562 * 16 14 13 42 42 H 0.96999 * 119.99980 * 179.97438 * 20 19 17 43 43 H 1.08001 * 125.93040 * 179.73297 * 25 4 3 44 44 H 1.09000 * 109.47187 * 94.34324 * 28 27 3 45 45 H 1.09000 * 109.46937 * 214.34103 * 28 27 3 46 46 H 1.08999 * 109.47311 * 334.33515 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 6 2.5104 1.8939 1.1138 5 6 2.4297 1.4503 2.5122 6 8 1.9137 0.3822 2.7826 7 7 2.9274 2.2264 3.4952 8 6 2.8464 1.7843 4.8895 9 6 3.4798 2.8408 5.7971 10 1 4.5453 2.9151 5.5795 11 6 3.2851 2.4390 7.2605 12 7 2.8391 4.1406 5.5567 13 6 3.7390 5.2453 5.9142 14 6 3.0490 6.5595 5.6541 15 8 1.9190 6.5745 5.2138 16 7 3.6878 7.7183 5.9107 17 6 3.0598 8.9139 5.6746 18 1 2.0536 8.9273 5.2826 19 6 3.7181 10.1086 5.9397 20 7 4.9423 10.0923 6.4172 21 14 2.8629 11.7377 5.6173 22 1 1.5005 11.4844 5.0834 23 1 2.7635 12.5041 6.8854 24 1 3.6448 12.5197 4.6263 25 6 3.0719 3.1053 0.6465 26 7 2.9568 3.1318 -0.6513 27 7 2.3170 1.9636 -1.0792 28 6 1.9986 1.6216 -2.4677 29 1 -0.3633 0.4359 -0.9307 30 1 -0.3633 -1.0239 0.0877 31 1 -0.3633 0.5880 0.8428 32 1 3.3385 3.0782 3.2795 33 1 3.3805 0.8409 5.0031 34 1 1.8015 1.6459 5.1668 35 1 3.7604 1.4745 7.4389 36 1 3.7359 3.1918 7.9071 37 1 2.2196 2.3647 7.4780 38 1 2.5313 4.2204 4.5991 39 1 3.9999 5.1742 6.9701 40 1 4.6451 5.1854 5.3112 41 1 4.5916 7.7063 6.2625 42 1 5.4019 10.9263 6.6019 43 1 3.5209 3.8735 1.2587 44 1 1.0419 2.0666 -2.7413 45 1 2.7791 2.0057 -3.1246 46 1 1.9381 0.5382 -2.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480581154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:12 Heat of formation + Delta-G solvation = -19.877833 kcal Electronic energy + Delta-G solvation = -29192.850223 eV Core-core repulsion = 24927.371221 eV Total energy + Delta-G solvation = -4265.479002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.84259 -39.44300 -38.45460 -38.33880 -36.85371 -34.11909 -33.85592 -33.46216 -31.32255 -30.88674 -30.18736 -28.09353 -27.13401 -26.61790 -25.81233 -23.95664 -22.80553 -21.37796 -20.58570 -20.35732 -19.33348 -18.62862 -17.90144 -17.17925 -16.79148 -16.43512 -16.06833 -15.67446 -15.43805 -15.29586 -15.03584 -14.83439 -14.57667 -14.40878 -13.97973 -13.88914 -13.84917 -13.38964 -13.13559 -13.07774 -12.75829 -12.52595 -12.41453 -12.29616 -11.87974 -11.71738 -11.66235 -11.61676 -11.40220 -11.09515 -10.83352 -10.59079 -10.34685 -10.22966 -9.92541 -9.78293 -9.52682 -9.18993 -8.84931 -8.47076 -8.11499 -7.96858 -6.42561 -3.83244 0.93616 1.78599 1.89774 3.07936 3.15863 3.16791 3.26881 3.34046 3.42744 3.89317 4.03317 4.08838 4.29745 4.61295 4.67329 4.68911 4.72831 4.79128 4.91000 4.95515 5.00837 5.03086 5.20453 5.22768 5.25553 5.33222 5.37558 5.59895 5.70839 5.72554 5.80256 5.81308 5.97449 6.01920 6.06593 6.21885 6.30358 6.42931 6.99923 7.16348 7.17620 7.44714 7.54919 7.59755 8.05773 8.23788 8.60306 9.17389 9.53500 10.04721 10.75194 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002506 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.544982 B =11169.449338 C =12987.154111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.297 6.297 3 C 0.321 3.679 4 C -0.297 4.297 5 C 0.599 3.401 6 O -0.541 6.541 7 N -0.728 5.728 8 C 0.122 3.878 9 C 0.071 3.929 10 H 0.049 0.951 11 C -0.138 4.138 12 N -0.664 5.664 13 C 0.049 3.951 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.095 3.905 26 N -0.274 5.274 27 N -0.371 5.371 28 C 0.093 3.907 29 H 0.047 0.953 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.348 0.652 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.197 0.803 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 -19.660 -12.263 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.206 6.206 3 C 0.147 3.853 4 C -0.313 4.313 5 C 0.387 3.613 6 O -0.419 6.419 7 N -0.380 5.380 8 C -0.001 4.001 9 C -0.039 4.039 10 H 0.067 0.933 11 C -0.196 4.196 12 N -0.299 5.299 13 C -0.084 4.084 14 C 0.225 3.775 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.092 4.092 26 N -0.096 5.096 27 N -0.160 5.160 28 C -0.048 4.048 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.213 0.787 44 H 0.098 0.902 45 H 0.115 0.885 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.826 -19.893 -12.888 23.871 hybrid contribution 0.812 1.047 -0.099 1.328 sum -2.014 -18.847 -12.987 22.976 Atomic orbital electron populations 1.23150 0.76601 1.04669 1.01173 1.86017 1.21420 1.20256 1.92874 1.19308 0.95007 0.84517 0.86435 1.19995 1.19138 0.98820 0.93317 1.16885 0.77578 0.83578 0.83297 1.90794 1.44866 1.22350 1.83863 1.45771 1.62070 1.23361 1.06837 1.21577 1.02466 0.97065 0.79032 1.21818 0.96500 0.89295 0.96322 0.93277 1.21732 1.02991 1.00579 0.94307 1.60119 1.39672 0.99578 1.30561 1.21763 0.93714 0.91030 1.01879 1.19804 0.87811 0.84773 0.85108 1.90534 1.19062 1.87037 1.49971 1.41874 1.16409 1.04656 1.57078 1.19748 1.00581 0.82100 1.40339 0.87870 1.25259 0.95822 0.99778 0.97093 1.69618 1.11576 1.28453 1.44648 0.85811 0.79432 0.81212 0.77965 1.19209 1.20751 1.20778 1.24002 0.96974 0.96239 0.92011 1.77287 1.18009 1.00843 1.13485 1.49007 1.45410 1.14531 1.07096 1.22008 1.02937 1.02342 0.77542 0.93460 0.87482 0.92028 0.76782 0.90789 0.90322 0.92490 0.92016 0.91530 0.83120 0.89398 0.93802 0.77470 0.91924 0.78665 0.90179 0.88517 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 11.13 101.05 1.12 1.43 16 2 O -0.30 -3.39 9.74 -24.98 -0.24 -3.63 16 3 C 0.32 3.87 6.98 -16.03 -0.11 3.76 16 4 C -0.30 -3.79 6.15 -104.87 -0.64 -4.43 16 5 C 0.60 8.31 7.80 -12.74 -0.10 8.21 16 6 O -0.54 -9.01 16.38 -2.03 -0.03 -9.04 16 7 N -0.73 -8.59 4.98 -61.54 -0.31 -8.90 16 8 C 0.12 1.41 5.31 -4.04 -0.02 1.39 16 9 C 0.07 0.82 2.81 -67.72 -0.19 0.63 16 10 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 11 C -0.14 -1.48 9.41 37.16 0.35 -1.14 16 12 N -0.66 -10.09 5.93 -108.00 -0.64 -10.73 16 13 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 14 C 0.44 10.04 7.82 -10.98 -0.09 9.96 16 15 O -0.58 -15.44 15.78 5.55 0.09 -15.35 16 16 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 17 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 21 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.10 1.09 11.50 -16.97 -0.20 0.89 16 26 N -0.27 -3.32 12.47 30.88 0.39 -2.93 16 27 N -0.37 -3.93 3.99 -67.67 -0.27 -4.20 16 28 C 0.09 0.55 11.41 59.85 0.68 1.23 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.15 6.32 -40.82 -0.26 3.89 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.35 5.43 6.41 -39.29 -0.25 5.18 16 39 H 0.09 1.37 7.43 -51.93 -0.39 0.98 16 40 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 41 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.20 1.71 7.50 -52.49 -0.39 1.32 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.41 8.03 -51.93 -0.42 -0.01 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -35.80 395.58 -5.43 -41.24 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.55 Total: 14.38 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 0.54 Total: 14.87 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.17 Total: -64.29 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.19 Total: -28.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.80 -5.43 -41.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480581154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.358 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds