Wall clock time and date at job start Tue Mar 31 2020 23:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35344 * 117.00188 * 2 1 4 4 C 1.38993 * 126.40909 * 95.31401 * 3 2 1 5 5 C 1.46927 * 126.49450 * 359.97438 * 4 3 2 6 6 O 1.21662 * 119.99753 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00007 * 180.02562 * 5 4 3 8 8 C 1.46502 * 120.00216 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47151 * 179.97438 * 8 7 5 10 10 H 1.09002 * 109.47058 * 295.00354 * 9 8 7 11 11 C 1.53001 * 109.47061 * 175.00580 * 9 8 7 12 12 N 1.46893 * 109.47125 * 55.00657 * 9 8 7 13 13 C 1.46901 * 111.00208 * 204.99808 * 12 9 8 14 14 C 1.50700 * 109.47171 * 179.97438 * 13 12 9 15 15 O 1.21289 * 120.00293 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99563 * 179.97438 * 14 13 12 17 17 C 1.37098 * 119.99644 * 180.02562 * 16 14 13 18 18 H 1.08001 * 120.00315 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99818 * 179.97438 * 17 16 14 20 20 N 1.31414 * 120.00153 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99995 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47309 * 120.00000 * 21 19 17 24 24 H 1.48499 * 109.47324 * 240.00280 * 21 19 17 25 25 C 1.41463 * 107.00735 * 180.26384 * 4 3 2 26 26 N 1.30312 * 108.13686 * 359.55630 * 25 4 3 27 27 N 1.34669 * 126.40369 * 275.31516 * 3 2 1 28 28 C 1.46497 * 125.73907 * 359.96267 * 27 3 2 29 29 H 1.09004 * 109.46780 * 64.90230 * 1 2 3 30 30 H 1.08999 * 109.47091 * 184.89531 * 1 2 3 31 31 H 1.08998 * 109.47105 * 304.90014 * 1 2 3 32 32 H 0.97003 * 120.00101 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.46446 * 60.00207 * 8 7 5 34 34 H 1.08994 * 109.47426 * 300.00535 * 8 7 5 35 35 H 1.09000 * 109.47334 * 59.99540 * 11 9 8 36 36 H 1.08996 * 109.47225 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.46559 * 300.00109 * 11 9 8 38 38 H 1.00905 * 110.99933 * 328.94711 * 12 9 8 39 39 H 1.08997 * 109.46968 * 299.99809 * 13 12 9 40 40 H 1.09001 * 109.47285 * 59.99794 * 13 12 9 41 41 H 0.96999 * 120.00242 * 0.02562 * 16 14 13 42 42 H 0.96999 * 119.99980 * 179.97438 * 20 19 17 43 43 H 1.08001 * 125.93040 * 179.73297 * 25 4 3 44 44 H 1.09000 * 109.47187 * 94.34324 * 28 27 3 45 45 H 1.09000 * 109.46937 * 214.34103 * 28 27 3 46 46 H 1.08999 * 109.47311 * 334.33515 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2059 0.0000 4 6 2.5104 1.8939 1.1138 5 6 2.4297 1.4503 2.5122 6 8 1.9137 0.3822 2.7826 7 7 2.9274 2.2264 3.4952 8 6 2.8464 1.7843 4.8895 9 6 3.4798 2.8408 5.7971 10 1 4.5453 2.9151 5.5795 11 6 3.2851 2.4390 7.2605 12 7 2.8391 4.1406 5.5567 13 6 3.7390 5.2453 5.9142 14 6 3.0490 6.5595 5.6541 15 8 1.9190 6.5745 5.2138 16 7 3.6878 7.7183 5.9107 17 6 3.0598 8.9139 5.6746 18 1 2.0536 8.9273 5.2826 19 6 3.7181 10.1086 5.9397 20 7 4.9423 10.0923 6.4172 21 14 2.8629 11.7377 5.6173 22 1 1.5005 11.4844 5.0834 23 1 2.7635 12.5041 6.8854 24 1 3.6448 12.5197 4.6263 25 6 3.0719 3.1053 0.6465 26 7 2.9568 3.1318 -0.6513 27 7 2.3170 1.9636 -1.0792 28 6 1.9986 1.6216 -2.4677 29 1 -0.3633 0.4359 -0.9307 30 1 -0.3633 -1.0239 0.0877 31 1 -0.3633 0.5880 0.8428 32 1 3.3385 3.0782 3.2795 33 1 3.3805 0.8409 5.0031 34 1 1.8015 1.6459 5.1668 35 1 3.7604 1.4745 7.4389 36 1 3.7359 3.1918 7.9071 37 1 2.2196 2.3647 7.4780 38 1 2.5313 4.2204 4.5991 39 1 3.9999 5.1742 6.9701 40 1 4.6451 5.1854 5.3112 41 1 4.5916 7.7063 6.2625 42 1 5.4019 10.9263 6.6019 43 1 3.5209 3.8735 1.2587 44 1 1.0419 2.0666 -2.7413 45 1 2.7791 2.0057 -3.1246 46 1 1.9381 0.5382 -2.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480581154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:11 Heat of formation + Delta-G solvation = -49.668507 kcal Electronic energy + Delta-G solvation = -29194.142044 eV Core-core repulsion = 24927.371221 eV Total energy + Delta-G solvation = -4266.770823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.68830 -40.54408 -40.01506 -39.25383 -38.07848 -35.94315 -34.98321 -34.34227 -33.24111 -32.08164 -31.06096 -28.82518 -28.09359 -27.79269 -26.88702 -25.62509 -23.72556 -22.18716 -21.58761 -21.31104 -21.05979 -19.90716 -19.48608 -18.18031 -17.72239 -17.53370 -17.18491 -16.86291 -16.67380 -16.42236 -16.28001 -15.84735 -15.74224 -15.68608 -15.37192 -15.14277 -14.73465 -14.68221 -14.24438 -13.76242 -13.66471 -13.63184 -13.47712 -13.40066 -13.23022 -12.96930 -12.90199 -12.75895 -12.54042 -12.45839 -12.36609 -12.10204 -11.83114 -11.48478 -11.37790 -10.99747 -10.57145 -10.30158 -10.21005 -9.97973 -9.74047 -9.32101 -8.44337 -5.92237 0.07704 0.99396 1.04267 1.37993 1.43617 1.57225 2.08995 2.18739 2.24349 2.31136 2.54817 2.91744 3.23707 3.32216 3.53492 3.75078 3.85617 3.95999 4.15946 4.22114 4.27033 4.28785 4.30617 4.32036 4.44405 4.50194 4.52821 4.58683 4.64020 4.65238 4.69662 4.89071 4.98260 5.00566 5.10051 5.25480 5.35744 5.44184 5.51164 5.92320 6.13295 6.20654 6.31533 6.40322 6.49452 6.63556 7.16232 7.22058 7.60458 8.15891 8.73205 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011465 B = 0.002506 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.544982 B =11169.449338 C =12987.154111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.311 6.311 3 C 0.318 3.682 4 C -0.323 4.323 5 C 0.597 3.403 6 O -0.576 6.576 7 N -0.719 5.719 8 C 0.127 3.873 9 C 0.078 3.922 10 H 0.070 0.930 11 C -0.137 4.137 12 N -0.680 5.680 13 C 0.064 3.936 14 C 0.438 3.562 15 O -0.623 6.623 16 N -0.573 5.573 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.271 1.271 25 C 0.096 3.904 26 N -0.295 5.295 27 N -0.366 5.366 28 C 0.081 3.919 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.042 0.958 32 H 0.405 0.595 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.343 0.657 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.215 0.785 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -20.015 -12.821 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.220 6.220 3 C 0.142 3.858 4 C -0.339 4.339 5 C 0.386 3.614 6 O -0.457 6.457 7 N -0.371 5.371 8 C 0.003 3.997 9 C -0.031 4.031 10 H 0.088 0.912 11 C -0.195 4.195 12 N -0.316 5.316 13 C -0.069 4.069 14 C 0.226 3.774 15 O -0.509 6.509 16 N -0.211 5.211 17 C -0.459 4.459 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.198 1.198 24 H -0.196 1.196 25 C -0.090 4.090 26 N -0.117 5.117 27 N -0.155 5.155 28 C -0.058 4.058 29 H 0.091 0.909 30 H 0.146 0.854 31 H 0.061 0.939 32 H 0.241 0.759 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.164 0.836 39 H 0.123 0.877 40 H 0.092 0.908 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.232 0.768 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.015 -20.243 -13.446 24.385 hybrid contribution 0.518 1.067 0.025 1.187 sum -1.497 -19.175 -13.421 23.453 Atomic orbital electron populations 1.23362 0.74945 1.05948 1.01686 1.85986 1.23015 1.20032 1.92981 1.19447 0.94796 0.84654 0.86876 1.20064 1.20774 0.99913 0.93109 1.17091 0.77068 0.83222 0.84020 1.90762 1.46635 1.23862 1.84434 1.45709 1.61395 1.23345 1.06687 1.21549 1.01726 0.97596 0.78812 1.21861 0.97234 0.87220 0.96787 0.91179 1.21745 1.02468 1.01834 0.93458 1.60119 1.40347 1.00648 1.30448 1.21629 0.94001 0.87789 1.03446 1.20902 0.87324 0.86286 0.82899 1.90507 1.21118 1.87978 1.51305 1.41931 1.16651 1.04693 1.57787 1.19668 1.00198 0.83967 1.42116 0.90436 1.25985 0.96430 1.02384 0.96422 1.69671 1.12250 1.29546 1.44649 0.84917 0.78113 0.77379 0.78228 1.19876 1.19782 1.19620 1.24292 0.96535 0.96169 0.92033 1.77233 1.18823 1.01883 1.13789 1.49313 1.44320 1.13639 1.08247 1.22412 1.04202 1.03760 0.75429 0.90936 0.85443 0.93925 0.75904 0.89677 0.91926 0.90048 0.92221 0.92782 0.83626 0.87725 0.90768 0.76930 0.91372 0.76834 0.88440 0.87406 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.13 113.37 1.26 1.79 16 2 O -0.31 -6.95 9.74 -79.40 -0.77 -7.72 16 3 C 0.32 7.55 6.98 84.44 0.59 8.14 16 4 C -0.32 -8.24 6.15 -20.03 -0.12 -8.36 16 5 C 0.60 16.67 7.80 86.52 0.67 17.34 16 6 O -0.58 -19.51 16.38 2.71 0.04 -19.46 16 7 N -0.72 -16.56 4.98 -466.86 -2.33 -18.89 16 8 C 0.13 2.80 5.31 86.38 0.46 3.26 16 9 C 0.08 1.65 2.81 44.92 0.13 1.78 16 10 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 11 C -0.14 -2.66 9.41 71.98 0.68 -1.98 16 12 N -0.68 -19.79 5.93 -495.59 -2.94 -22.73 16 13 C 0.06 2.00 5.97 85.56 0.51 2.51 16 14 C 0.44 20.00 7.82 87.66 0.69 20.68 16 15 O -0.62 -33.62 15.78 -3.06 -0.05 -33.67 16 16 N -0.57 -28.52 5.29 -306.98 -1.62 -30.14 16 17 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 20 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 21 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 C 0.10 2.17 11.50 85.71 0.99 3.15 16 26 N -0.29 -6.94 12.47 -56.23 -0.70 -7.64 16 27 N -0.37 -7.40 3.99 -479.81 -1.91 -9.31 16 28 C 0.08 0.82 11.41 127.77 1.46 2.27 16 29 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.40 8.07 6.32 -92.71 -0.59 7.48 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.34 10.48 6.41 -89.69 -0.57 9.90 16 39 H 0.10 3.00 7.43 -2.39 -0.02 2.98 16 40 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 41 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 42 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.22 3.61 7.50 -2.91 -0.02 3.58 16 44 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 45 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 0.74 8.03 -2.39 -0.02 0.72 16 Total: -1.00 -78.37 395.58 -0.24 -78.60 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.85 Total: 42.21 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 8.58 Total: 32.76 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -9.22 Total: -137.36 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -0.78 Total: -60.85 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -78.37 -0.24 -78.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480581154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.936 kcal (2) G-P(sol) polarization free energy of solvation -78.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds