Wall clock time and date at job start Tue Mar 31 2020 22:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47560 * 2 1 4 4 C 1.50707 * 109.47056 * 120.00188 * 2 1 3 5 5 O 1.21283 * 119.99770 * 120.00010 * 4 2 1 6 6 N 1.34771 * 119.99736 * 299.99610 * 4 2 1 7 7 C 1.46503 * 119.99650 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46767 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.47837 * 294.99926 * 8 7 6 10 10 N 1.46502 * 109.47333 * 55.00285 * 8 7 6 11 11 C 1.36941 * 119.99946 * 204.99926 * 10 8 7 12 12 H 1.07999 * 120.00069 * 359.97438 * 11 10 8 13 13 C 1.38813 * 119.99955 * 179.97438 * 11 10 8 14 14 N 1.31616 * 119.99914 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99950 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47194 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47266 * 120.00396 * 15 13 11 18 18 H 1.48502 * 109.47408 * 239.99939 * 15 13 11 19 19 C 1.50703 * 109.47277 * 174.99849 * 8 7 6 20 20 C 1.38232 * 120.00243 * 279.73108 * 19 8 7 21 21 C 1.38237 * 120.00129 * 179.78311 * 20 19 8 22 22 C 1.38234 * 119.99939 * 0.44034 * 21 20 19 23 23 C 1.38231 * 119.99790 * 359.81015 * 22 21 20 24 24 C 1.38234 * 120.00224 * 359.97438 * 23 22 21 25 25 C 1.50705 * 109.46856 * 239.99715 * 2 1 3 26 26 C 1.38675 * 120.41661 * 120.00166 * 25 2 1 27 27 C 1.38628 * 118.42013 * 179.97438 * 26 25 2 28 28 C 1.38220 * 119.16326 * 359.97438 * 27 26 25 29 29 N 1.31857 * 120.76198 * 0.02562 * 28 27 26 30 30 C 1.31883 * 121.72627 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.46939 * 300.00359 * 1 2 3 32 32 H 1.09000 * 109.46999 * 59.99800 * 1 2 3 33 33 H 1.08995 * 109.47560 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00126 * 0.02562 * 6 4 2 35 35 H 1.08995 * 109.47129 * 299.99884 * 7 6 4 36 36 H 1.08994 * 109.47242 * 60.00016 * 7 6 4 37 37 H 0.96994 * 120.00206 * 24.99377 * 10 8 7 38 38 H 0.97003 * 120.00036 * 179.97438 * 14 13 11 39 39 H 1.08003 * 119.99725 * 359.97438 * 20 19 8 40 40 H 1.08002 * 119.99814 * 180.27201 * 21 20 19 41 41 H 1.08002 * 119.99909 * 179.83546 * 22 21 20 42 42 H 1.08001 * 119.99999 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.99996 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.78542 * 359.70640 * 26 25 2 45 45 H 1.07996 * 120.41751 * 179.97438 * 27 26 25 46 46 H 1.07997 * 119.62169 * 180.02562 * 28 27 26 47 47 H 1.08007 * 119.61759 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.7295 -1.6966 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6507 8 6 1.6849 -0.2195 4.8999 9 1 2.1188 0.7794 4.9460 10 7 0.2248 -0.1154 4.8412 11 6 -0.4184 0.8831 5.5228 12 1 0.1507 1.5936 6.1040 13 6 -1.8019 0.9820 5.4668 14 7 -2.4954 0.1164 4.7581 15 14 -2.6793 2.3436 6.3971 16 1 -1.6802 3.1787 7.1110 17 1 -3.4368 3.1889 5.4395 18 1 -3.6185 1.7459 7.3800 19 6 2.0840 -0.9975 6.1273 20 6 1.3499 -2.1032 6.5138 21 6 1.7187 -2.8195 7.6372 22 6 2.8162 -2.4247 8.3791 23 6 3.5473 -1.3160 7.9955 24 6 3.1811 -0.6024 6.8697 25 6 2.0322 -0.7105 -1.2305 26 6 2.8300 -0.0450 -2.1490 27 6 3.2694 -0.7385 -3.2660 28 6 2.9009 -2.0611 -3.4257 29 7 2.1408 -2.6621 -2.5314 30 6 1.7046 -2.0336 -1.4572 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1488 0.5385 2.5435 35 1 1.8325 -1.9681 3.6509 36 1 3.2855 -0.9400 3.6505 37 1 -0.2863 -0.7537 4.3195 38 1 -3.4622 0.1853 4.7193 39 1 0.4900 -2.4092 5.9364 40 1 1.1477 -3.6859 7.9366 41 1 3.1027 -2.9828 9.2583 42 1 4.4045 -1.0074 8.5754 43 1 3.7526 0.2636 6.5698 44 1 3.0989 0.9903 -1.9999 45 1 3.8919 -0.2516 -4.0021 46 1 3.2394 -2.6086 -4.2929 47 1 1.0840 -2.5591 -0.7464 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481372056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:13 Heat of formation + Delta-G solvation = 12.756907 kcal Electronic energy + Delta-G solvation = -28621.576666 eV Core-core repulsion = 24768.362076 eV Total energy + Delta-G solvation = -3853.214590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61422 -40.52728 -39.96021 -37.41749 -35.60851 -35.18971 -33.62727 -33.00928 -31.70189 -31.17358 -30.74692 -28.83229 -26.10691 -25.50916 -24.49227 -24.31247 -23.29612 -22.94772 -21.45025 -20.85653 -19.30768 -18.26060 -18.07023 -17.69144 -17.23894 -16.99710 -16.77255 -16.22544 -15.91717 -15.73990 -15.62379 -15.29107 -15.00850 -14.71866 -14.60514 -14.49837 -14.15328 -14.05475 -13.93407 -13.81333 -13.55721 -13.38728 -13.24233 -12.90999 -12.81203 -12.47070 -12.43041 -12.25862 -12.14124 -11.97615 -11.82425 -11.62400 -11.03966 -10.89323 -10.61271 -10.36587 -10.03355 -9.88747 -9.68011 -9.52281 -9.01457 -7.90276 -5.19453 0.18887 0.39456 0.58766 0.64677 1.48489 1.51877 1.58879 1.63766 2.26206 2.57678 2.93142 3.02577 3.42909 3.44123 3.67770 3.75193 3.83392 4.00380 4.06992 4.07970 4.14801 4.16609 4.22659 4.24162 4.35629 4.37689 4.40920 4.42260 4.66364 4.71376 4.78765 4.79799 4.85170 4.88678 4.91686 5.04320 5.20922 5.21405 5.23385 5.30645 5.36999 5.47640 5.57876 5.69346 5.73338 5.81853 5.94045 6.25882 6.29835 6.60143 7.06858 7.25618 7.38275 8.05288 8.32453 9.31620 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.003196 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.635547 B = 8757.988323 C =10809.386313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.056 4.056 3 H 0.137 0.863 4 C 0.514 3.486 5 O -0.581 6.581 6 N -0.706 5.706 7 C 0.133 3.867 8 C 0.205 3.795 9 H 0.073 0.927 10 N -0.717 5.717 11 C -0.228 4.228 12 H 0.074 0.926 13 C -0.060 4.060 14 N -0.960 5.960 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.293 1.293 18 H -0.304 1.304 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.132 4.132 23 C -0.127 4.127 24 C -0.127 4.127 25 C -0.124 4.124 26 C -0.071 4.071 27 C -0.168 4.168 28 C 0.079 3.921 29 N -0.520 5.520 30 C 0.108 3.892 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.047 0.953 34 H 0.413 0.587 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.375 0.625 38 H 0.248 0.752 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.143 0.857 42 H 0.147 0.853 43 H 0.135 0.865 44 H 0.165 0.835 45 H 0.172 0.828 46 H 0.179 0.821 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.351 2.120 -8.849 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.078 4.078 3 H 0.154 0.846 4 C 0.301 3.699 5 O -0.462 6.462 6 N -0.357 5.357 7 C 0.008 3.992 8 C 0.096 3.904 9 H 0.091 0.909 10 N -0.357 5.357 11 C -0.360 4.360 12 H 0.091 0.909 13 C -0.253 4.253 14 N -0.610 5.610 15 Si 0.790 3.210 16 H -0.194 1.194 17 H -0.220 1.220 18 H -0.232 1.232 19 C -0.105 4.105 20 C -0.129 4.129 21 C -0.156 4.156 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.126 4.126 26 C -0.097 4.097 27 C -0.187 4.187 28 C -0.078 4.078 29 N -0.229 5.229 30 C -0.048 4.048 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.250 0.750 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.208 0.792 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.183 0.817 45 H 0.189 0.811 46 H 0.196 0.804 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.569 0.723 -8.943 16.267 hybrid contribution -1.424 1.108 0.840 1.990 sum 12.145 1.830 -8.103 14.715 Atomic orbital electron populations 1.21770 0.91113 1.02594 1.04050 1.20218 0.98120 1.01014 0.88408 0.84578 1.20936 0.79528 0.84207 0.85270 1.90688 1.40117 1.28005 1.87343 1.45911 1.52750 1.32292 1.04784 1.21381 0.98642 0.95394 0.83786 1.19537 0.84886 0.96457 0.89562 0.90937 1.42480 1.00482 1.34422 1.58289 1.19470 0.89660 1.05031 1.21824 0.90851 1.25300 0.97164 1.00972 1.01867 1.69795 1.05702 1.39257 1.46288 0.85296 0.78561 0.79362 0.77824 1.19386 1.22048 1.23194 1.20900 0.95160 0.95642 0.98776 1.20953 0.98619 0.95804 0.97532 1.21345 0.98228 1.00428 0.95602 1.21385 0.95490 0.97773 1.00301 1.21416 1.00554 0.95601 0.96877 1.21289 0.96701 1.00629 0.95891 1.20441 0.99933 0.95423 0.96806 1.21893 0.93522 1.01575 0.92721 1.22483 1.01389 0.95593 0.99221 1.23319 0.93307 0.93580 0.97553 1.67651 1.11913 1.39827 1.03535 1.22383 0.96788 0.92073 0.93597 0.91293 0.89446 0.93409 0.74961 0.93696 0.90614 0.79190 0.94253 0.88670 0.85557 0.83887 0.83556 0.84698 0.81703 0.81102 0.80422 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.91 71.98 0.64 -2.60 16 2 C -0.06 -1.30 2.92 -12.28 -0.04 -1.34 16 3 H 0.14 2.30 7.93 -2.39 -0.02 2.28 16 4 C 0.51 15.88 7.03 87.66 0.62 16.50 16 5 O -0.58 -22.28 15.12 -3.04 -0.05 -22.32 16 6 N -0.71 -21.75 5.28 -463.07 -2.45 -24.19 16 7 C 0.13 4.41 5.21 86.38 0.45 4.87 16 8 C 0.21 7.29 2.65 44.24 0.12 7.41 16 9 H 0.07 2.47 7.94 -2.39 -0.02 2.45 16 10 N -0.72 -31.66 3.79 -326.49 -1.24 -32.90 16 11 C -0.23 -11.35 9.92 84.03 0.83 -10.51 16 12 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 13 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 14 N -0.96 -54.42 13.06 21.65 0.28 -54.14 16 15 Si 0.96 43.64 29.55 68.60 2.03 45.67 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 19 C -0.10 -3.56 4.92 -19.87 -0.10 -3.66 16 20 C -0.11 -4.12 9.33 22.27 0.21 -3.91 16 21 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 22 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 23 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 24 C -0.13 -3.72 9.67 22.27 0.22 -3.51 16 25 C -0.12 -3.05 4.40 -19.77 -0.09 -3.14 16 26 C -0.07 -1.32 9.81 22.47 0.22 -1.10 16 27 C -0.17 -2.76 10.11 22.36 0.23 -2.54 16 28 C 0.08 1.66 11.18 84.68 0.95 2.61 16 29 N -0.52 -15.14 10.36 -195.85 -2.03 -17.17 16 30 C 0.11 3.23 9.12 84.67 0.77 4.00 16 31 H 0.07 1.76 7.56 -2.39 -0.02 1.74 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.27 7.42 -2.39 -0.02 1.25 16 34 H 0.41 12.47 7.56 -92.71 -0.70 11.77 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.38 18.34 7.80 -92.71 -0.72 17.62 16 38 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.10 3.98 7.71 -2.91 -0.02 3.96 16 40 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 41 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 43 H 0.14 3.33 8.04 -2.91 -0.02 3.30 16 44 H 0.17 1.90 8.00 -2.91 -0.02 1.87 16 45 H 0.17 1.46 8.06 -2.91 -0.02 1.43 16 46 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 47 H 0.13 4.21 7.53 -2.91 -0.02 4.19 16 Total: -1.00 -68.65 397.64 2.28 -66.37 By element: Atomic # 1 Polarization: 49.18 SS G_CDS: -0.44 Total: 48.74 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 6.16 Total: -10.07 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.43 Total: -128.39 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.65 2.28 -66.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481372056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.131 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds