Wall clock time and date at job start Tue Mar 31 2020 22:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47683 * 2 1 4 4 C 1.50704 * 109.47148 * 239.99447 * 2 1 3 5 5 O 1.21274 * 120.00039 * 240.00590 * 4 2 1 6 6 N 1.34776 * 119.99562 * 60.00054 * 4 2 1 7 7 C 1.46503 * 119.99569 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46814 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47321 * 294.99860 * 8 7 6 10 10 N 1.46499 * 109.47475 * 54.99622 * 8 7 6 11 11 C 1.36932 * 119.99995 * 204.99860 * 10 8 7 12 12 H 1.08001 * 120.00526 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99659 * 180.02562 * 11 10 8 14 14 N 1.31618 * 120.00077 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99753 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47206 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47139 * 119.99879 * 15 13 11 18 18 H 1.48501 * 109.46770 * 239.99492 * 15 13 11 19 19 C 1.50702 * 109.47221 * 175.00227 * 8 7 6 20 20 C 1.38234 * 120.00272 * 99.99373 * 19 8 7 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99464 * 280.02088 * 19 8 7 25 25 C 1.50705 * 109.47075 * 119.99900 * 2 1 3 26 26 C 1.38676 * 120.41402 * 239.71894 * 25 2 1 27 27 C 1.38631 * 118.41489 * 179.78204 * 26 25 2 28 28 C 1.38226 * 119.16321 * 0.51350 * 27 26 25 29 29 N 1.31856 * 120.76164 * 359.72390 * 28 27 26 30 30 C 1.31889 * 121.72634 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.46820 * 60.00183 * 1 2 3 32 32 H 1.08994 * 109.47761 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47015 * 300.00751 * 1 2 3 34 34 H 0.96999 * 120.00521 * 0.02562 * 6 4 2 35 35 H 1.08994 * 109.46994 * 60.00502 * 7 6 4 36 36 H 1.09000 * 109.46867 * 299.99782 * 7 6 4 37 37 H 0.97004 * 119.99571 * 25.00541 * 10 8 7 38 38 H 0.97008 * 119.99977 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.99769 * 0.02562 * 20 19 8 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 42 42 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00481 * 359.97438 * 24 19 8 44 44 H 1.07993 * 120.79468 * 0.02562 * 26 25 2 45 45 H 1.08004 * 120.41968 * 180.22418 * 27 26 25 46 46 H 1.08002 * 119.62089 * 179.74941 * 28 27 26 47 47 H 1.07999 * 119.61278 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1946 -0.9412 -3.6507 8 6 1.6852 -0.2195 -4.8999 9 1 0.5988 -0.2956 -4.9459 10 7 2.0737 1.1918 -4.8413 11 6 1.3468 2.1309 -5.5229 12 1 0.4868 1.8313 -6.1035 13 6 1.7154 3.4681 -5.4677 14 7 2.7637 3.8332 -4.7607 15 14 0.7233 4.7494 -6.3971 16 1 -0.3977 4.0860 -7.1102 17 1 0.1805 5.7457 -5.4390 18 1 1.5988 5.4351 -7.3812 19 6 2.2856 -0.8554 -6.1273 20 6 1.5472 -1.7579 -6.8696 21 6 2.0978 -2.3407 -7.9957 22 6 3.3866 -2.0205 -8.3798 23 6 4.1246 -1.1172 -7.6380 24 6 3.5749 -0.5364 -6.5103 25 6 2.0323 -0.7104 1.2305 26 6 2.8349 -0.0464 2.1460 27 6 3.2699 -0.7384 3.2657 28 6 2.9008 -2.0608 3.4259 29 7 2.1403 -2.6617 2.5319 30 6 1.7041 -2.0332 1.4576 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 1.1494 0.5387 -2.5436 35 1 1.8308 -1.9686 -3.6504 36 1 3.2846 -0.9416 -3.6508 37 1 2.8460 1.4609 -4.3196 38 1 3.0210 4.7677 -4.7218 39 1 0.5399 -2.0071 -6.5703 40 1 1.5209 -3.0455 -8.5760 41 1 3.8184 -2.4791 -9.2570 42 1 5.1316 -0.8673 -7.9378 43 1 4.1518 0.1687 -5.9304 44 1 3.1111 0.9862 1.9924 45 1 3.8933 -0.2518 4.0013 46 1 3.2390 -2.6081 4.2934 47 1 1.0825 -2.5585 0.7476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481372058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:18 Heat of formation + Delta-G solvation = 30.062343 kcal Electronic energy + Delta-G solvation = -28559.868289 eV Core-core repulsion = 24707.404118 eV Total energy + Delta-G solvation = -3852.464170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.60023 -39.33657 -38.73667 -35.98506 -34.58110 -33.62454 -32.22027 -31.97917 -30.43714 -29.82790 -29.58505 -27.46303 -25.03768 -23.89010 -23.57268 -23.00685 -22.10019 -21.81398 -20.09015 -19.68470 -17.54077 -17.17388 -17.10018 -16.39743 -16.18187 -15.83314 -15.27897 -14.95825 -14.69042 -14.53638 -14.21538 -14.02019 -13.82239 -13.59796 -13.42625 -13.10221 -12.99422 -12.87894 -12.81024 -12.72077 -12.45155 -12.24207 -11.99314 -11.54422 -11.41639 -11.15687 -11.00709 -10.86785 -10.74897 -10.48997 -10.15554 -9.92011 -9.85493 -9.51954 -9.46651 -9.13480 -8.98125 -8.71016 -8.43055 -8.21434 -7.18415 -5.92074 -3.23379 1.07389 1.25843 1.83908 1.90462 2.86251 3.33489 3.41187 3.42435 3.43248 3.86135 4.28215 4.32105 4.46161 4.60320 4.69012 4.88609 4.92538 5.06370 5.10627 5.21123 5.21805 5.32211 5.39003 5.42039 5.49249 5.53059 5.56344 5.60291 5.71318 5.76020 5.77785 5.84005 5.98032 6.01331 6.04633 6.06984 6.23763 6.24765 6.38780 6.46315 6.60297 6.65945 6.76343 6.91352 6.99738 7.25470 7.50491 7.59573 7.84788 7.95908 8.24029 8.48998 9.37422 9.87074 10.23790 11.29301 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.003170 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.751201 B = 8832.072735 C =10850.970687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.070 4.070 3 H 0.109 0.891 4 C 0.516 3.484 5 O -0.545 6.545 6 N -0.709 5.709 7 C 0.121 3.879 8 C 0.198 3.802 9 H 0.066 0.934 10 N -0.714 5.714 11 C -0.243 4.243 12 H 0.072 0.928 13 C -0.005 4.005 14 N -0.928 5.928 15 Si 0.905 3.095 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.292 1.292 19 C -0.082 4.082 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.128 4.128 24 C -0.084 4.084 25 C -0.112 4.112 26 C -0.069 4.069 27 C -0.177 4.177 28 C 0.091 3.909 29 N -0.488 5.488 30 C 0.133 3.867 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.411 0.589 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.152 0.848 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -9.033 8.929 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.092 4.092 3 H 0.127 0.873 4 C 0.301 3.699 5 O -0.423 6.423 6 N -0.361 5.361 7 C -0.003 4.003 8 C 0.087 3.913 9 H 0.083 0.917 10 N -0.355 5.355 11 C -0.374 4.374 12 H 0.090 0.910 13 C -0.202 4.202 14 N -0.576 5.576 15 Si 0.736 3.264 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.085 4.085 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.146 4.146 24 C -0.102 4.102 25 C -0.114 4.114 26 C -0.095 4.095 27 C -0.197 4.197 28 C -0.065 4.065 29 N -0.196 5.196 30 C -0.024 4.024 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.248 0.752 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.141 0.859 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.169 0.831 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.010 -10.482 9.042 13.988 hybrid contribution -0.034 2.324 -0.855 2.477 sum -2.043 -8.158 8.187 11.737 Atomic orbital electron populations 1.21806 0.91720 1.02990 1.03391 1.20239 0.97925 1.00588 0.90405 0.87262 1.20306 0.80459 0.84618 0.84541 1.90705 1.38144 1.26612 1.86842 1.45931 1.53155 1.32167 1.04871 1.21581 0.99495 0.95451 0.83809 1.19483 0.97419 0.85689 0.88692 0.91661 1.42466 1.34913 0.99350 1.58754 1.19233 1.07677 0.87167 1.23305 0.91028 1.24715 0.98039 0.97145 1.00279 1.69664 1.27181 1.16369 1.44339 0.86164 0.79253 0.81831 0.79187 1.20517 1.21820 1.21865 1.20970 0.94203 0.94821 0.98551 1.21007 0.99586 0.97554 0.95754 1.20985 0.95683 1.00697 0.97439 1.20984 0.95031 0.99294 0.99924 1.21110 0.99713 0.97755 0.96003 1.21004 0.95259 0.97699 0.96229 1.20367 0.99124 0.95905 0.96035 1.21509 0.94494 1.00325 0.93166 1.22072 1.02224 0.96334 0.99042 1.22735 0.94017 0.92312 0.97467 1.67706 1.10595 1.38517 1.02813 1.22492 0.95806 0.90886 0.93212 0.90888 0.91885 0.91331 0.75210 0.91502 0.91649 0.77875 0.93434 0.86745 0.86981 0.87079 0.86862 0.85946 0.84783 0.84914 0.83060 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.91 37.16 0.33 -1.05 16 2 C -0.07 -0.83 2.92 -92.92 -0.27 -1.10 16 3 H 0.11 1.21 7.93 -51.93 -0.41 0.80 16 4 C 0.52 7.82 7.03 -10.98 -0.08 7.75 16 5 O -0.55 -10.09 15.12 5.56 0.08 -10.00 16 6 N -0.71 -10.72 5.28 -60.29 -0.32 -11.04 16 7 C 0.12 1.96 5.21 -4.04 -0.02 1.94 16 8 C 0.20 3.50 2.64 -69.08 -0.18 3.32 16 9 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 10 N -0.71 -15.45 3.80 -54.55 -0.21 -15.66 16 11 C -0.24 -6.03 9.92 -15.06 -0.15 -6.18 16 12 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 13 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 14 N -0.93 -25.69 13.06 55.49 0.72 -24.96 16 15 Si 0.90 21.08 29.55 -169.99 -5.02 16.05 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C -0.08 -1.44 4.92 -104.62 -0.51 -1.95 16 20 C -0.12 -1.89 9.67 -39.59 -0.38 -2.27 16 21 C -0.13 -1.89 10.05 -39.59 -0.40 -2.28 16 22 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 23 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 24 C -0.08 -1.52 9.32 -39.58 -0.37 -1.89 16 25 C -0.11 -1.41 4.40 -104.48 -0.46 -1.87 16 26 C -0.07 -0.77 9.81 -39.27 -0.39 -1.15 16 27 C -0.18 -1.79 10.11 -39.44 -0.40 -2.19 16 28 C 0.09 1.02 11.18 -17.55 -0.20 0.83 16 29 N -0.49 -6.75 10.36 -13.25 -0.14 -6.89 16 30 C 0.13 1.82 9.12 -17.55 -0.16 1.66 16 31 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 32 H 0.06 0.60 7.41 -51.93 -0.38 0.22 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.41 6.16 7.56 -40.82 -0.31 5.85 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.39 9.08 7.80 -40.82 -0.32 8.77 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.11 1.57 8.04 -52.49 -0.42 1.15 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.12 2.38 7.72 -52.49 -0.41 1.97 16 44 H 0.13 1.22 8.00 -52.49 -0.42 0.80 16 45 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.15 1.99 7.53 -52.49 -0.40 1.59 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -30.77 397.66 -10.21 -40.98 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -6.80 Total: 17.02 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -4.53 Total: -11.49 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.06 Total: -58.55 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.77 -10.21 -40.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481372058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.043 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds