Wall clock time and date at job start Tue Mar 31 2020 22:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47683 * 2 1 4 4 C 1.50704 * 109.47148 * 239.99447 * 2 1 3 5 5 O 1.21274 * 120.00039 * 240.00590 * 4 2 1 6 6 N 1.34776 * 119.99562 * 60.00054 * 4 2 1 7 7 C 1.46503 * 119.99569 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.46814 * 180.02562 * 7 6 4 9 9 H 1.09001 * 109.47321 * 294.99860 * 8 7 6 10 10 N 1.46499 * 109.47475 * 54.99622 * 8 7 6 11 11 C 1.36932 * 119.99995 * 204.99860 * 10 8 7 12 12 H 1.08001 * 120.00526 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99659 * 180.02562 * 11 10 8 14 14 N 1.31618 * 120.00077 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99753 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47206 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47139 * 119.99879 * 15 13 11 18 18 H 1.48501 * 109.46770 * 239.99492 * 15 13 11 19 19 C 1.50702 * 109.47221 * 175.00227 * 8 7 6 20 20 C 1.38234 * 120.00272 * 99.99373 * 19 8 7 21 21 C 1.38230 * 119.99880 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99464 * 280.02088 * 19 8 7 25 25 C 1.50705 * 109.47075 * 119.99900 * 2 1 3 26 26 C 1.38676 * 120.41402 * 239.71894 * 25 2 1 27 27 C 1.38631 * 118.41489 * 179.78204 * 26 25 2 28 28 C 1.38226 * 119.16321 * 0.51350 * 27 26 25 29 29 N 1.31856 * 120.76164 * 359.72390 * 28 27 26 30 30 C 1.31889 * 121.72634 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.46820 * 60.00183 * 1 2 3 32 32 H 1.08994 * 109.47761 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.47015 * 300.00751 * 1 2 3 34 34 H 0.96999 * 120.00521 * 0.02562 * 6 4 2 35 35 H 1.08994 * 109.46994 * 60.00502 * 7 6 4 36 36 H 1.09000 * 109.46867 * 299.99782 * 7 6 4 37 37 H 0.97004 * 119.99571 * 25.00541 * 10 8 7 38 38 H 0.97008 * 119.99977 * 180.02562 * 14 13 11 39 39 H 1.08001 * 119.99769 * 0.02562 * 20 19 8 40 40 H 1.08000 * 120.00376 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 42 42 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.00481 * 359.97438 * 24 19 8 44 44 H 1.07993 * 120.79468 * 0.02562 * 26 25 2 45 45 H 1.08004 * 120.41968 * 180.22418 * 27 26 25 46 46 H 1.08002 * 119.62089 * 179.74941 * 28 27 26 47 47 H 1.07999 * 119.61278 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.1946 -0.9412 -3.6507 8 6 1.6852 -0.2195 -4.8999 9 1 0.5988 -0.2956 -4.9459 10 7 2.0737 1.1918 -4.8413 11 6 1.3468 2.1309 -5.5229 12 1 0.4868 1.8313 -6.1035 13 6 1.7154 3.4681 -5.4677 14 7 2.7637 3.8332 -4.7607 15 14 0.7233 4.7494 -6.3971 16 1 -0.3977 4.0860 -7.1102 17 1 0.1805 5.7457 -5.4390 18 1 1.5988 5.4351 -7.3812 19 6 2.2856 -0.8554 -6.1273 20 6 1.5472 -1.7579 -6.8696 21 6 2.0978 -2.3407 -7.9957 22 6 3.3866 -2.0205 -8.3798 23 6 4.1246 -1.1172 -7.6380 24 6 3.5749 -0.5364 -6.5103 25 6 2.0323 -0.7104 1.2305 26 6 2.8349 -0.0464 2.1460 27 6 3.2699 -0.7384 3.2657 28 6 2.9008 -2.0608 3.4259 29 7 2.1403 -2.6617 2.5319 30 6 1.7041 -2.0332 1.4576 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 1.1494 0.5387 -2.5436 35 1 1.8308 -1.9686 -3.6504 36 1 3.2846 -0.9416 -3.6508 37 1 2.8460 1.4609 -4.3196 38 1 3.0210 4.7677 -4.7218 39 1 0.5399 -2.0071 -6.5703 40 1 1.5209 -3.0455 -8.5760 41 1 3.8184 -2.4791 -9.2570 42 1 5.1316 -0.8673 -7.9378 43 1 4.1518 0.1687 -5.9304 44 1 3.1111 0.9862 1.9924 45 1 3.8933 -0.2518 4.0013 46 1 3.2390 -2.6081 4.2934 47 1 1.0825 -2.5585 0.7476 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481372058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:17 Heat of formation + Delta-G solvation = 12.474124 kcal Electronic energy + Delta-G solvation = -28560.630971 eV Core-core repulsion = 24707.404118 eV Total energy + Delta-G solvation = -3853.226853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.61719 -40.52905 -39.96177 -37.42151 -35.60391 -35.19328 -33.63045 -33.01930 -31.70253 -31.17937 -30.74711 -28.83230 -26.10831 -25.50089 -24.49778 -24.31917 -23.29986 -22.94958 -21.44828 -20.87062 -19.30225 -18.28489 -18.07478 -17.69529 -17.22211 -16.97286 -16.80652 -16.23748 -15.93280 -15.72641 -15.63708 -15.28579 -14.99821 -14.80476 -14.62502 -14.33004 -14.15638 -14.06719 -13.95665 -13.91879 -13.50062 -13.40414 -13.23463 -12.91030 -12.80976 -12.47082 -12.39403 -12.27896 -12.14522 -11.98046 -11.82443 -11.62705 -11.04526 -10.90237 -10.61912 -10.38239 -10.03365 -9.88877 -9.68027 -9.52273 -9.02293 -7.91259 -5.20335 0.18267 0.37522 0.58789 0.64619 1.48392 1.51773 1.58839 1.64471 2.25254 2.57304 2.92506 3.02500 3.42841 3.43302 3.67438 3.76397 3.80496 4.02097 4.06340 4.06827 4.15046 4.16688 4.22228 4.24072 4.35518 4.37533 4.41216 4.42219 4.65277 4.71474 4.78820 4.79931 4.84821 4.89784 4.92434 5.04091 5.19614 5.20757 5.23118 5.30607 5.36708 5.47400 5.57313 5.69423 5.73249 5.80274 5.93882 6.25705 6.29351 6.59920 7.05282 7.25302 7.37499 8.04496 8.31609 9.30896 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009758 B = 0.003170 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.751201 B = 8832.072735 C =10850.970687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.061 4.061 3 H 0.120 0.880 4 C 0.515 3.485 5 O -0.581 6.581 6 N -0.706 5.706 7 C 0.133 3.867 8 C 0.205 3.795 9 H 0.073 0.927 10 N -0.717 5.717 11 C -0.228 4.228 12 H 0.074 0.926 13 C -0.061 4.061 14 N -0.962 5.962 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.293 1.293 18 H -0.304 1.304 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.111 4.111 25 C -0.124 4.124 26 C -0.078 4.078 27 C -0.169 4.169 28 C 0.081 3.919 29 N -0.517 5.517 30 C 0.113 3.887 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.413 0.587 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.375 0.625 38 H 0.249 0.751 39 H 0.135 0.865 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.155 0.845 45 H 0.167 0.833 46 H 0.180 0.820 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -9.690 8.683 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 H 0.138 0.862 4 C 0.302 3.698 5 O -0.461 6.461 6 N -0.357 5.357 7 C 0.008 3.992 8 C 0.096 3.904 9 H 0.091 0.909 10 N -0.357 5.357 11 C -0.360 4.360 12 H 0.092 0.908 13 C -0.254 4.254 14 N -0.612 5.612 15 Si 0.790 3.210 16 H -0.194 1.194 17 H -0.220 1.220 18 H -0.231 1.231 19 C -0.105 4.105 20 C -0.145 4.145 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.104 4.104 27 C -0.189 4.189 28 C -0.075 4.075 29 N -0.226 5.226 30 C -0.043 4.043 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.250 0.750 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.208 0.792 38 H 0.058 0.942 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.114 0.886 44 H 0.172 0.828 45 H 0.185 0.815 46 H 0.197 0.803 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.988 -11.174 8.778 14.521 hybrid contribution 0.307 2.385 -0.787 2.530 sum -2.681 -8.789 7.991 12.178 Atomic orbital electron populations 1.21798 0.90013 1.03251 1.04327 1.20234 0.99269 1.00359 0.88465 0.86178 1.20899 0.79571 0.84133 0.85225 1.90684 1.39785 1.28319 1.87334 1.45910 1.52984 1.32057 1.04777 1.21385 0.98215 0.95837 0.83757 1.19539 0.97626 0.83703 0.89578 0.90939 1.42482 1.34179 1.00744 1.58287 1.19482 1.07056 0.87618 1.21811 0.90823 1.25313 0.99281 0.98891 1.01896 1.69797 1.28979 1.16007 1.46437 0.85282 0.78101 0.79775 0.77813 1.19384 1.22005 1.23150 1.20895 0.94449 0.96331 0.98794 1.21287 1.00351 0.96973 0.95906 1.21416 0.95814 1.00363 0.96850 1.21386 0.95019 0.98206 1.00341 1.21346 1.00684 0.98030 0.95519 1.20952 0.95821 0.98631 0.97513 1.20449 0.99876 0.95739 0.96585 1.21874 0.93900 1.01416 0.93185 1.22457 1.01475 0.95852 0.99094 1.23295 0.93311 0.93237 0.97698 1.67674 1.11824 1.39538 1.03519 1.22451 0.96742 0.91562 0.93594 0.90580 0.92006 0.89674 0.74974 0.90569 0.93684 0.79221 0.94223 0.84721 0.83574 0.83880 0.85526 0.88650 0.82763 0.81511 0.80302 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.91 71.98 0.64 -1.92 16 2 C -0.06 -1.45 2.92 -12.28 -0.04 -1.49 16 3 H 0.12 2.56 7.93 -2.39 -0.02 2.54 16 4 C 0.51 15.91 7.03 87.66 0.62 16.53 16 5 O -0.58 -22.17 15.12 -3.01 -0.05 -22.21 16 6 N -0.71 -21.72 5.28 -463.06 -2.45 -24.16 16 7 C 0.13 4.41 5.21 86.38 0.45 4.86 16 8 C 0.20 7.28 2.64 44.25 0.12 7.40 16 9 H 0.07 2.47 7.94 -2.39 -0.02 2.46 16 10 N -0.72 -31.65 3.80 -326.50 -1.24 -32.89 16 11 C -0.23 -11.34 9.92 84.04 0.83 -10.51 16 12 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 13 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 14 N -0.96 -54.46 13.06 21.65 0.28 -54.17 16 15 Si 0.96 43.56 29.55 68.60 2.03 45.58 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 19 C -0.10 -3.55 4.92 -19.87 -0.10 -3.65 16 20 C -0.13 -3.73 9.67 22.27 0.22 -3.51 16 21 C -0.13 -3.27 10.05 22.27 0.22 -3.05 16 22 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 23 C -0.14 -4.33 10.05 22.27 0.22 -4.10 16 24 C -0.11 -4.10 9.32 22.27 0.21 -3.89 16 25 C -0.12 -3.09 4.40 -19.77 -0.09 -3.18 16 26 C -0.08 -1.62 9.81 22.47 0.22 -1.40 16 27 C -0.17 -3.06 10.11 22.36 0.23 -2.83 16 28 C 0.08 1.71 11.18 84.69 0.95 2.65 16 29 N -0.52 -14.29 10.36 -195.85 -2.03 -16.32 16 30 C 0.11 3.15 9.12 84.67 0.77 3.92 16 31 H 0.08 1.37 7.56 -2.39 -0.02 1.35 16 32 H 0.06 1.17 7.41 -2.39 -0.02 1.15 16 33 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.41 12.47 7.56 -92.71 -0.70 11.77 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.38 18.30 7.80 -92.71 -0.72 17.58 16 38 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 39 H 0.13 3.34 8.04 -2.91 -0.02 3.31 16 40 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.10 3.96 7.72 -2.91 -0.02 3.94 16 44 H 0.15 2.49 8.00 -2.91 -0.02 2.46 16 45 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 46 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 47 H 0.14 3.95 7.53 -2.91 -0.02 3.93 16 Total: -1.00 -67.72 397.66 2.28 -65.45 By element: Atomic # 1 Polarization: 49.35 SS G_CDS: -0.44 Total: 48.92 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 6.16 Total: -10.18 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -5.43 Total: -127.55 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.21 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.72 2.28 -65.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481372058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.920 kcal (2) G-P(sol) polarization free energy of solvation -67.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds