Wall clock time and date at job start Tue Mar 31 2020 23:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47221 * 2 1 4 4 C 1.52997 * 109.46820 * 120.00454 * 2 1 3 5 5 N 1.46501 * 109.46837 * 174.99973 * 4 2 1 6 6 C 1.36940 * 119.99772 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00052 * 359.97438 * 6 5 4 8 8 C 1.38818 * 119.99757 * 180.02562 * 6 5 4 9 9 N 1.31614 * 120.00042 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99757 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47190 * 89.99606 * 10 8 6 12 12 H 1.48497 * 109.47220 * 210.00005 * 10 8 6 13 13 H 1.48502 * 109.47182 * 329.99895 * 10 8 6 14 14 N 1.46507 * 109.46974 * 239.99921 * 2 1 3 15 15 C 1.46499 * 119.99936 * 300.00045 * 14 2 1 16 16 C 1.34773 * 120.00078 * 120.00092 * 14 2 1 17 17 O 1.21570 * 119.99826 * 4.83237 * 16 14 2 18 18 C 1.47701 * 120.00351 * 184.82761 * 16 14 2 19 19 C 1.40197 * 120.45659 * 321.63659 * 18 16 14 20 20 C 1.38054 * 118.37969 * 179.74603 * 19 18 16 21 21 C 1.39508 * 119.21474 * 0.53144 * 20 19 18 22 22 C 1.48222 * 119.57218 * 179.72381 * 21 20 19 23 23 C 1.39427 * 120.13166 * 179.72557 * 22 21 20 24 24 C 1.37997 * 119.86920 * 179.97438 * 23 22 21 25 25 C 1.38343 * 120.12903 * 0.02562 * 24 23 22 26 26 C 1.38340 * 120.26298 * 359.97438 * 25 24 23 27 27 C 1.37998 * 120.12632 * 0.02562 * 26 25 24 28 28 N 1.32774 * 120.85873 * 359.45385 * 21 20 19 29 29 C 1.31521 * 121.76759 * 0.27693 * 28 21 20 30 30 H 1.09001 * 109.47108 * 299.99963 * 1 2 3 31 31 H 1.09004 * 109.46986 * 59.99947 * 1 2 3 32 32 H 1.09003 * 109.47749 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47169 * 294.99328 * 4 2 1 34 34 H 1.08993 * 109.47789 * 54.99994 * 4 2 1 35 35 H 0.96998 * 120.00542 * 359.97438 * 5 4 2 36 36 H 0.97004 * 119.99709 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47083 * 264.90644 * 15 14 2 38 38 H 1.09002 * 109.47334 * 24.91088 * 15 14 2 39 39 H 1.08999 * 109.47218 * 144.90650 * 15 14 2 40 40 H 1.07993 * 120.81079 * 0.03997 * 19 18 16 41 41 H 1.07999 * 120.39117 * 180.27830 * 20 19 18 42 42 H 1.08000 * 120.06302 * 0.02562 * 23 22 21 43 43 H 1.07994 * 119.93522 * 179.72515 * 24 23 22 44 44 H 1.07994 * 119.86583 * 179.97438 * 25 24 23 45 45 H 1.07997 * 119.93697 * 180.02562 * 26 25 24 46 46 H 1.08007 * 120.06238 * 180.02562 * 27 26 25 47 47 H 1.07996 * 119.65154 * 179.97438 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1838 -1.4381 2.2072 7 1 3.6467 -1.8426 3.0524 8 6 5.5673 -1.5373 2.1518 9 7 6.2217 -1.0439 1.1220 10 14 6.5001 -2.3710 3.5389 11 1 6.6327 -3.8206 3.2451 12 1 7.8503 -1.7652 3.6616 13 1 5.7588 -2.1900 4.8129 14 7 2.0183 -0.6907 -1.1962 15 6 1.6644 -2.0932 -1.4280 16 6 2.7931 -0.0357 -2.0834 17 8 3.1595 1.0995 -1.8488 18 6 3.1973 -0.6971 -3.3407 19 6 3.5261 -2.0600 -3.3529 20 6 3.8929 -2.6358 -4.5528 21 6 3.9350 -1.8463 -5.7022 22 6 4.3337 -2.4549 -6.9935 23 6 4.3742 -1.6780 -8.1506 24 6 4.7467 -2.2502 -9.3498 25 6 5.0791 -3.5919 -9.4055 26 6 5.0408 -4.3678 -8.2608 27 6 4.6698 -3.8067 -7.0559 28 7 3.6173 -0.5579 -5.6555 29 6 3.2577 0.0263 -4.5334 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 1.7516 -0.1584 2.1369 34 1 1.6053 -1.7198 1.2951 35 1 3.9824 -0.4629 0.4316 36 1 7.1885 -1.1135 1.0832 37 1 2.4602 -2.7358 -1.0514 38 1 0.7344 -2.3240 -0.9083 39 1 1.5351 -2.2635 -2.4968 40 1 3.4886 -2.6462 -2.4467 41 1 4.1483 -3.6841 -4.6003 42 1 4.1153 -0.6304 -8.1081 43 1 4.7742 -1.6504 -10.2475 44 1 5.3696 -4.0353 -10.3464 45 1 5.3017 -5.4146 -8.3103 46 1 4.6406 -4.4133 -6.1627 47 1 3.0068 1.0767 -4.5345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482346143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:51 Heat of formation + Delta-G solvation = 53.457309 kcal Electronic energy + Delta-G solvation = -28655.766027 eV Core-core repulsion = 24804.316339 eV Total energy + Delta-G solvation = -3851.449689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81316 -39.58656 -38.56176 -36.38196 -34.24356 -33.23942 -32.71731 -31.59570 -31.03311 -30.11003 -29.40246 -26.92170 -25.68276 -24.85085 -24.04994 -22.74719 -22.21179 -21.77769 -20.95072 -19.15527 -17.76184 -17.30562 -17.08850 -16.47261 -16.27757 -16.05088 -15.10392 -14.91540 -14.68731 -14.55680 -14.41674 -14.17351 -13.70322 -13.66920 -13.57550 -13.38648 -13.21836 -12.80645 -12.66932 -12.43770 -12.30992 -12.28382 -12.01734 -11.81016 -11.50902 -11.45126 -11.29686 -10.85217 -10.79737 -10.48410 -10.06794 -10.02043 -9.85154 -9.79343 -9.70049 -9.34984 -9.17141 -8.87813 -8.42289 -8.28014 -6.90605 -5.73244 -3.03198 0.24540 1.18754 1.20558 1.47351 2.98764 3.19718 3.42609 3.48080 3.50423 3.51251 3.91651 3.99316 4.43670 4.57206 4.64532 4.72826 4.78269 4.81739 4.87885 4.96641 5.10379 5.20108 5.26989 5.32214 5.36011 5.38994 5.52202 5.53625 5.59382 5.64905 5.70788 5.78107 5.85864 5.95060 6.01724 6.05114 6.07273 6.16268 6.20141 6.26358 6.34804 6.35892 6.44645 6.54353 6.70272 6.72715 6.94082 7.61672 7.69891 7.81923 8.42908 8.44140 9.55399 10.14051 10.49387 11.48484 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011794 B = 0.002856 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.513766 B = 9801.989710 C =11277.440226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.126 3.874 3 H 0.102 0.898 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.242 4.242 7 H 0.069 0.931 8 C -0.012 4.012 9 N -0.927 5.927 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.590 5.590 15 C 0.074 3.926 16 C 0.566 3.434 17 O -0.527 6.527 18 C -0.171 4.171 19 C -0.039 4.039 20 C -0.169 4.169 21 C 0.178 3.822 22 C -0.049 4.049 23 C -0.078 4.078 24 C -0.128 4.128 25 C -0.111 4.111 26 C -0.125 4.125 27 C -0.099 4.099 28 N -0.482 5.482 29 C 0.157 3.843 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.387 0.613 36 H 0.255 0.745 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.864 -6.108 -19.088 22.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.016 3.984 5 N -0.373 5.373 6 C -0.373 4.373 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.322 5.322 15 C -0.069 4.069 16 C 0.353 3.647 17 O -0.404 6.404 18 C -0.176 4.176 19 C -0.064 4.064 20 C -0.189 4.189 21 C 0.042 3.958 22 C -0.050 4.050 23 C -0.097 4.097 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.118 4.118 28 N -0.191 5.191 29 C -0.002 4.002 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.038 0.962 35 H 0.221 0.779 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.172 0.828 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.610 -5.074 -19.538 22.357 hybrid contribution 0.848 -1.003 1.463 1.966 sum -8.761 -6.077 -18.075 20.986 Atomic orbital electron populations 1.22075 0.95040 1.02100 1.02202 1.21444 0.93257 0.98604 0.84440 0.88012 1.21004 0.87186 0.96717 0.93538 1.42317 0.99656 1.70156 1.25179 1.19199 0.89414 1.29518 0.99182 0.91299 1.24754 0.96451 1.01641 0.98019 1.69692 1.07158 1.50553 1.30162 0.86222 0.79517 0.78922 0.81692 1.21820 1.21794 1.20815 1.47542 1.50270 1.12133 1.22246 1.22066 1.01546 0.82302 1.00983 1.17958 0.78215 0.85693 0.82852 1.90807 1.53928 1.18542 1.77093 1.21035 1.05514 0.95216 0.95873 1.22191 0.91617 0.93653 0.98989 1.22012 1.02672 1.01661 0.92531 1.19897 0.93918 0.89508 0.92474 1.18549 1.01581 0.93386 0.91498 1.21384 0.96430 1.00567 0.91308 1.21167 1.00206 0.95291 0.97911 1.21289 0.98992 0.94210 0.98448 1.21067 1.00639 1.00099 0.92491 1.21297 0.98152 0.93868 0.98436 1.67650 1.12205 1.10436 1.28775 1.22791 0.91686 0.99791 0.85922 0.91223 0.92566 0.92325 0.95379 0.96193 0.77893 0.93552 0.91429 0.90836 0.91551 0.82785 0.84053 0.84618 0.85745 0.85985 0.85648 0.85348 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.18 37.16 0.34 -1.58 16 2 C 0.13 2.11 2.79 -67.93 -0.19 1.92 16 3 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 4 C 0.14 2.86 5.55 -4.04 -0.02 2.84 16 5 N -0.73 -18.67 5.43 -59.91 -0.33 -19.00 16 6 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 8 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 9 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 N -0.59 -9.64 2.24 -175.10 -0.39 -10.03 16 15 C 0.07 0.96 8.00 59.85 0.48 1.43 16 16 C 0.57 10.36 7.08 -12.40 -0.09 10.27 16 17 O -0.53 -11.58 16.25 5.30 0.09 -11.50 16 18 C -0.17 -2.69 5.27 -104.78 -0.55 -3.25 16 19 C -0.04 -0.54 7.68 -38.91 -0.30 -0.84 16 20 C -0.17 -2.07 9.44 -39.18 -0.37 -2.44 16 21 C 0.18 2.35 6.73 -82.88 -0.56 1.79 16 22 C -0.05 -0.57 5.88 -104.91 -0.62 -1.19 16 23 C -0.08 -0.84 9.57 -39.23 -0.38 -1.22 16 24 C -0.13 -1.12 10.03 -39.63 -0.40 -1.52 16 25 C -0.11 -0.88 10.04 -39.51 -0.40 -1.28 16 26 C -0.12 -1.03 10.03 -39.63 -0.40 -1.43 16 27 C -0.10 -0.94 9.42 -39.23 -0.37 -1.31 16 28 N -0.48 -6.93 9.40 -9.46 -0.09 -7.02 16 29 C 0.16 2.33 10.79 -17.17 -0.19 2.15 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.64 6.67 -51.93 -0.35 0.30 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 35 H 0.39 10.84 7.06 -40.82 -0.29 10.55 16 36 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.07 0.97 6.86 -51.93 -0.36 0.61 16 38 H 0.07 0.81 6.44 -51.93 -0.33 0.48 16 39 H 0.07 0.73 5.83 -51.93 -0.30 0.42 16 40 H 0.15 2.08 5.29 -52.49 -0.28 1.80 16 41 H 0.14 1.32 6.17 -52.49 -0.32 1.00 16 42 H 0.14 1.47 7.53 -52.49 -0.40 1.08 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.13 1.00 6.17 -52.48 -0.32 0.68 16 47 H 0.17 2.26 8.05 -52.49 -0.42 1.84 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -34.91 385.79 -9.67 -44.58 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -6.22 Total: 10.61 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -4.24 Total: -3.05 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.08 Total: -64.01 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.91 -9.67 -44.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482346143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.037 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds