Wall clock time and date at job start Tue Mar 31 2020 23:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47465 * 2 1 4 4 C 1.53003 * 109.47434 * 239.99874 * 2 1 3 5 5 N 1.46499 * 109.47360 * 185.00214 * 4 2 1 6 6 C 1.36941 * 119.99923 * 179.97438 * 5 4 2 7 7 H 1.07991 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99682 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00325 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99595 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47191 * 60.00445 * 10 8 6 12 12 H 1.48507 * 109.47149 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47440 * 300.00176 * 10 8 6 14 14 N 1.46505 * 109.47275 * 119.99908 * 2 1 3 15 15 C 1.46494 * 119.99868 * 59.99944 * 14 2 1 16 16 C 1.34775 * 119.99947 * 240.00027 * 14 2 1 17 17 O 1.21567 * 119.99971 * 4.83641 * 16 14 2 18 18 C 1.47701 * 119.99927 * 184.82847 * 16 14 2 19 19 C 1.40194 * 120.46088 * 321.65477 * 18 16 14 20 20 C 1.38047 * 118.38212 * 179.72270 * 19 18 16 21 21 C 1.39511 * 119.21733 * 0.25492 * 20 19 18 22 22 C 1.48222 * 119.56933 * 179.97438 * 21 20 19 23 23 C 1.39429 * 120.13025 * 359.72113 * 22 21 20 24 24 C 1.38000 * 119.86386 * 179.70037 * 23 22 21 25 25 C 1.38338 * 120.13075 * 0.60203 * 24 23 22 26 26 C 1.38339 * 120.26306 * 359.67530 * 25 24 23 27 27 C 1.37991 * 120.12738 * 0.02562 * 26 25 24 28 28 N 1.32766 * 120.85506 * 359.97235 * 21 20 19 29 29 C 1.31517 * 121.77006 * 0.02562 * 28 21 20 30 30 H 1.08995 * 109.47005 * 300.00105 * 1 2 3 31 31 H 1.09006 * 109.46748 * 60.00324 * 1 2 3 32 32 H 1.08996 * 109.46769 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46941 * 305.00177 * 4 2 1 34 34 H 1.09000 * 109.46943 * 64.99931 * 4 2 1 35 35 H 0.96997 * 120.00165 * 359.97438 * 5 4 2 36 36 H 0.96997 * 120.00375 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47215 * 264.92073 * 15 14 2 38 38 H 1.09003 * 109.47220 * 24.91908 * 15 14 2 39 39 H 1.08994 * 109.47672 * 144.91935 * 15 14 2 40 40 H 1.07999 * 120.80926 * 359.97438 * 19 18 16 41 41 H 1.08001 * 120.39231 * 180.27086 * 20 19 18 42 42 H 1.07997 * 120.06949 * 359.97438 * 23 22 21 43 43 H 1.08005 * 119.93292 * 180.31912 * 24 23 22 44 44 H 1.08001 * 119.86829 * 179.69783 * 25 24 23 45 45 H 1.07996 * 119.93797 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.06323 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.65304 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4389 -2.2067 7 1 3.6468 -1.8441 -3.0515 8 6 5.5674 -1.5381 -2.1512 9 7 6.2219 -1.0439 -1.1219 10 14 6.5000 -2.3742 -3.5370 11 1 6.2426 -1.6558 -4.8109 12 1 7.9548 -2.3500 -3.2398 13 1 6.0441 -3.7820 -3.6617 14 7 2.0184 -0.6906 1.1962 15 6 1.6645 -2.0931 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0146 1.1508 1.9374 18 6 3.3733 -0.7592 3.2329 19 6 2.6315 -1.7437 3.9007 20 6 3.2177 -2.3972 4.9660 21 6 4.5165 -2.0554 5.3434 22 6 5.1533 -2.7518 6.4865 23 6 4.4549 -3.7377 7.1825 24 6 5.0553 -4.3868 8.2420 25 6 6.3428 -4.0524 8.6217 26 6 7.0385 -3.0711 7.9386 27 6 6.4508 -2.4194 6.8737 28 7 5.1896 -1.1146 4.6919 29 6 4.6665 -0.4692 3.6723 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.9825 -0.4622 -0.4319 36 1 7.1886 -1.1135 -1.0829 37 1 0.7886 -2.1447 2.0748 38 1 1.4415 -2.5738 0.4755 39 1 2.4998 -2.6045 1.9062 40 1 1.6274 -1.9878 3.5867 41 1 2.6773 -3.1643 5.5008 42 1 3.4478 -3.9958 6.8902 43 1 4.5172 -5.1543 8.7786 44 1 6.8068 -4.5598 9.4546 45 1 8.0435 -2.8145 8.2393 46 1 6.9951 -1.6537 6.3408 47 1 5.2450 0.2898 3.1667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482346149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:54 Heat of formation + Delta-G solvation = 53.658945 kcal Electronic energy + Delta-G solvation = -28748.014830 eV Core-core repulsion = 24896.573885 eV Total energy + Delta-G solvation = -3851.440945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.78718 -39.57230 -38.53175 -36.39664 -34.24507 -33.22230 -32.67397 -31.58695 -31.00201 -30.11371 -29.35920 -26.91150 -25.68540 -24.83172 -24.01915 -22.74488 -22.18525 -21.76336 -20.92901 -19.15867 -17.73783 -17.30501 -17.08291 -16.47091 -16.24299 -16.02390 -15.12979 -14.87599 -14.67478 -14.53938 -14.39050 -14.12134 -13.71586 -13.61032 -13.55465 -13.37222 -13.21694 -12.80196 -12.69195 -12.42005 -12.30367 -12.19339 -12.15181 -11.72246 -11.50160 -11.44314 -11.25977 -10.83979 -10.76860 -10.50572 -10.08027 -10.01291 -9.82686 -9.74544 -9.69462 -9.32000 -9.13594 -8.86401 -8.41163 -8.27812 -6.90272 -5.72793 -3.02448 0.28498 1.21929 1.23602 1.50883 2.94743 3.21651 3.44608 3.48941 3.50607 3.57921 3.99768 4.03470 4.41821 4.58424 4.65018 4.74109 4.76848 4.83757 4.89484 4.98520 5.14462 5.22001 5.31263 5.34117 5.36349 5.42401 5.52272 5.57478 5.58887 5.62309 5.74805 5.79837 5.87020 5.93774 6.01630 6.01886 6.07777 6.15911 6.22085 6.30409 6.34117 6.39994 6.47332 6.60263 6.68853 6.76467 6.93373 7.61601 7.70122 7.91035 8.41644 8.44568 9.56001 10.13702 10.48888 11.49220 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.003118 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.288268 B = 8976.754146 C =10714.343785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.244 4.244 7 H 0.068 0.932 8 C -0.011 4.011 9 N -0.928 5.928 10 Si 0.906 3.094 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 N -0.588 5.588 15 C 0.076 3.924 16 C 0.568 3.432 17 O -0.532 6.532 18 C -0.172 4.172 19 C -0.049 4.049 20 C -0.174 4.174 21 C 0.179 3.821 22 C -0.049 4.049 23 C -0.100 4.100 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.127 4.127 27 C -0.076 4.076 28 N -0.479 5.479 29 C 0.172 3.828 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.030 0.970 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.148 0.852 41 H 0.140 0.860 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 -6.075 18.792 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.120 0.880 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.375 4.375 7 H 0.086 0.914 8 C -0.207 4.207 9 N -0.576 5.576 10 Si 0.737 3.263 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 N -0.320 5.320 15 C -0.067 4.067 16 C 0.355 3.645 17 O -0.409 6.409 18 C -0.177 4.177 19 C -0.075 4.075 20 C -0.194 4.194 21 C 0.043 3.957 22 C -0.050 4.050 23 C -0.119 4.119 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.145 4.145 27 C -0.095 4.095 28 N -0.187 5.187 29 C 0.013 3.987 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.166 0.834 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.155 0.845 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.098 -5.312 18.794 21.143 hybrid contribution -0.087 -0.770 -0.957 1.231 sum -8.185 -6.081 17.838 20.546 Atomic orbital electron populations 1.22053 0.94979 1.02073 1.02166 1.21456 0.93415 0.98571 0.84317 0.87997 1.21016 0.87190 0.96754 0.93582 1.42278 0.99618 1.70154 1.25175 1.19141 0.89416 1.29730 0.99180 0.91354 1.24740 0.96435 1.01556 0.98000 1.69658 1.07253 1.50522 1.30140 0.86296 0.79084 0.79206 0.81721 1.21297 1.21682 1.21377 1.47550 1.50043 1.12107 1.22339 1.22028 0.99647 0.82282 1.02747 1.17967 0.78102 0.86514 0.81867 1.90785 1.59906 1.14887 1.75320 1.21005 0.97638 0.99949 0.99096 1.22020 1.00316 0.92023 0.93102 1.21936 0.96113 1.02417 0.98917 1.19932 0.90505 0.92077 0.93141 1.18558 0.94717 0.97023 0.94727 1.21247 0.99826 0.95347 0.95438 1.21044 0.95580 1.00285 0.97529 1.21285 0.94822 0.97318 0.99524 1.21183 1.00236 0.96863 0.96188 1.21435 0.93971 0.98566 0.95541 1.67699 1.36153 1.07128 1.07693 1.22933 0.91056 0.94843 0.89850 0.92591 0.91289 0.92397 0.96174 0.95258 0.78062 0.93463 0.93058 0.90109 0.90913 0.83440 0.84219 0.85504 0.85731 0.85996 0.85680 0.84456 0.81194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.19 37.16 0.34 -1.57 16 2 C 0.13 2.11 2.79 -67.93 -0.19 1.92 16 3 H 0.10 1.96 6.91 -51.92 -0.36 1.61 16 4 C 0.14 2.84 5.52 -4.04 -0.02 2.82 16 5 N -0.73 -18.71 5.43 -59.91 -0.33 -19.04 16 6 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 10 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 N -0.59 -9.68 2.24 -175.10 -0.39 -10.07 16 15 C 0.08 1.00 7.90 59.84 0.47 1.47 16 16 C 0.57 10.44 7.08 -12.40 -0.09 10.35 16 17 O -0.53 -11.50 16.24 5.31 0.09 -11.41 16 18 C -0.17 -2.77 5.27 -104.78 -0.55 -3.32 16 19 C -0.05 -0.61 7.67 -38.92 -0.30 -0.90 16 20 C -0.17 -2.01 9.44 -39.18 -0.37 -2.38 16 21 C 0.18 2.47 6.73 -82.89 -0.56 1.92 16 22 C -0.05 -0.60 5.88 -104.91 -0.62 -1.22 16 23 C -0.10 -0.95 9.42 -39.23 -0.37 -1.32 16 24 C -0.13 -1.05 10.03 -39.63 -0.40 -1.45 16 25 C -0.11 -0.93 10.04 -39.51 -0.40 -1.33 16 26 C -0.13 -1.21 10.03 -39.63 -0.40 -1.61 16 27 C -0.08 -0.90 9.57 -39.23 -0.38 -1.28 16 28 N -0.48 -7.70 9.40 -9.46 -0.09 -7.79 16 29 C 0.17 2.94 10.79 -17.17 -0.19 2.75 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 33 H 0.02 0.39 6.86 -51.93 -0.36 0.03 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.39 10.75 7.06 -40.82 -0.29 10.46 16 36 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.05 0.49 6.86 -51.93 -0.36 0.13 16 38 H 0.08 1.09 6.53 -51.93 -0.34 0.75 16 39 H 0.07 1.00 5.83 -51.93 -0.30 0.69 16 40 H 0.15 1.41 5.29 -52.49 -0.28 1.14 16 41 H 0.14 1.12 6.17 -52.49 -0.32 0.80 16 42 H 0.13 0.92 6.17 -52.49 -0.32 0.60 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 45 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.14 1.70 7.53 -52.48 -0.40 1.31 16 47 H 0.17 3.01 8.04 -52.48 -0.42 2.59 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -34.87 385.79 -9.68 -44.55 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.23 Total: 10.72 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.25 Total: -2.58 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.08 Total: -64.78 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.87 -9.68 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482346149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.212 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds