Wall clock time and date at job start Tue Mar 31 2020 23:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47465 * 2 1 4 4 C 1.53003 * 109.47434 * 239.99874 * 2 1 3 5 5 N 1.46499 * 109.47360 * 185.00214 * 4 2 1 6 6 C 1.36941 * 119.99923 * 179.97438 * 5 4 2 7 7 H 1.07991 * 119.99972 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99682 * 179.97438 * 6 5 4 9 9 N 1.31616 * 120.00325 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99595 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47191 * 60.00445 * 10 8 6 12 12 H 1.48507 * 109.47149 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47440 * 300.00176 * 10 8 6 14 14 N 1.46505 * 109.47275 * 119.99908 * 2 1 3 15 15 C 1.46494 * 119.99868 * 59.99944 * 14 2 1 16 16 C 1.34775 * 119.99947 * 240.00027 * 14 2 1 17 17 O 1.21567 * 119.99971 * 4.83641 * 16 14 2 18 18 C 1.47701 * 119.99927 * 184.82847 * 16 14 2 19 19 C 1.40194 * 120.46088 * 321.65477 * 18 16 14 20 20 C 1.38047 * 118.38212 * 179.72270 * 19 18 16 21 21 C 1.39511 * 119.21733 * 0.25492 * 20 19 18 22 22 C 1.48222 * 119.56933 * 179.97438 * 21 20 19 23 23 C 1.39429 * 120.13025 * 359.72113 * 22 21 20 24 24 C 1.38000 * 119.86386 * 179.70037 * 23 22 21 25 25 C 1.38338 * 120.13075 * 0.60203 * 24 23 22 26 26 C 1.38339 * 120.26306 * 359.67530 * 25 24 23 27 27 C 1.37991 * 120.12738 * 0.02562 * 26 25 24 28 28 N 1.32766 * 120.85506 * 359.97235 * 21 20 19 29 29 C 1.31517 * 121.77006 * 0.02562 * 28 21 20 30 30 H 1.08995 * 109.47005 * 300.00105 * 1 2 3 31 31 H 1.09006 * 109.46748 * 60.00324 * 1 2 3 32 32 H 1.08996 * 109.46769 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46941 * 305.00177 * 4 2 1 34 34 H 1.09000 * 109.46943 * 64.99931 * 4 2 1 35 35 H 0.96997 * 120.00165 * 359.97438 * 5 4 2 36 36 H 0.96997 * 120.00375 * 179.97438 * 9 8 6 37 37 H 1.09002 * 109.47215 * 264.92073 * 15 14 2 38 38 H 1.09003 * 109.47220 * 24.91908 * 15 14 2 39 39 H 1.08994 * 109.47672 * 144.91935 * 15 14 2 40 40 H 1.07999 * 120.80926 * 359.97438 * 19 18 16 41 41 H 1.08001 * 120.39231 * 180.27086 * 20 19 18 42 42 H 1.07997 * 120.06949 * 359.97438 * 23 22 21 43 43 H 1.08005 * 119.93292 * 180.31912 * 24 23 22 44 44 H 1.08001 * 119.86829 * 179.69783 * 25 24 23 45 45 H 1.07996 * 119.93797 * 180.02562 * 26 25 24 46 46 H 1.08005 * 120.06323 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.65304 * 180.02562 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1839 -1.4389 -2.2067 7 1 3.6468 -1.8441 -3.0515 8 6 5.5674 -1.5381 -2.1512 9 7 6.2219 -1.0439 -1.1219 10 14 6.5000 -2.3742 -3.5370 11 1 6.2426 -1.6558 -4.8109 12 1 7.9548 -2.3500 -3.2398 13 1 6.0441 -3.7820 -3.6617 14 7 2.0184 -0.6906 1.1962 15 6 1.6645 -2.0931 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0146 1.1508 1.9374 18 6 3.3733 -0.7592 3.2329 19 6 2.6315 -1.7437 3.9007 20 6 3.2177 -2.3972 4.9660 21 6 4.5165 -2.0554 5.3434 22 6 5.1533 -2.7518 6.4865 23 6 4.4549 -3.7377 7.1825 24 6 5.0553 -4.3868 8.2420 25 6 6.3428 -4.0524 8.6217 26 6 7.0385 -3.0711 7.9386 27 6 6.4508 -2.4194 6.8737 28 7 5.1896 -1.1146 4.6919 29 6 4.6665 -0.4692 3.6723 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.9825 -0.4622 -0.4319 36 1 7.1886 -1.1135 -1.0829 37 1 0.7886 -2.1447 2.0748 38 1 1.4415 -2.5738 0.4755 39 1 2.4998 -2.6045 1.9062 40 1 1.6274 -1.9878 3.5867 41 1 2.6773 -3.1643 5.5008 42 1 3.4478 -3.9958 6.8902 43 1 4.5172 -5.1543 8.7786 44 1 6.8068 -4.5598 9.4546 45 1 8.0435 -2.8145 8.2393 46 1 6.9951 -1.6537 6.3408 47 1 5.2450 0.2898 3.1667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482346149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:53 Heat of formation + Delta-G solvation = 31.863104 kcal Electronic energy + Delta-G solvation = -28748.959968 eV Core-core repulsion = 24896.573885 eV Total energy + Delta-G solvation = -3852.386084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.94416 -40.68864 -39.45658 -37.89053 -35.97428 -34.56505 -33.67393 -33.06699 -31.87184 -31.64550 -30.34726 -28.05225 -27.40686 -25.93176 -25.03250 -24.50045 -23.23271 -22.66112 -22.09775 -20.50797 -19.14167 -18.61979 -18.53254 -17.69196 -17.31297 -17.03972 -16.72510 -16.38264 -15.72867 -15.49729 -15.41028 -15.31221 -15.25158 -15.05672 -14.78253 -14.49706 -14.21456 -14.03482 -13.80808 -13.67716 -13.57339 -13.33916 -13.30592 -13.14125 -12.82432 -12.74325 -12.53430 -12.20006 -12.18280 -11.98418 -11.82512 -11.76319 -11.23515 -10.96190 -10.94361 -10.74576 -10.51612 -9.85571 -9.66788 -9.25179 -9.01732 -7.94915 -5.25107 -0.71218 0.16420 0.50573 0.60880 1.43263 1.47002 1.53320 1.61343 2.01038 2.53717 2.61867 2.99694 3.07757 3.38060 3.41243 3.52872 3.73887 3.84024 3.94755 4.05034 4.08082 4.13705 4.20732 4.23087 4.29352 4.34737 4.44445 4.55637 4.60113 4.63406 4.67866 4.77021 4.81445 4.85542 4.93453 4.96325 4.98761 5.02857 5.14275 5.17697 5.30877 5.41111 5.46278 5.56757 5.60402 5.61058 5.64904 6.06104 6.23738 6.31994 6.79626 7.05931 7.30588 8.07218 8.29751 9.27650 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010398 B = 0.003118 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.288268 B = 8976.754146 C =10714.343785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.067 0.933 4 C 0.140 3.860 5 N -0.743 5.743 6 C -0.244 4.244 7 H 0.080 0.920 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.278 1.278 12 H -0.300 1.300 13 H -0.273 1.273 14 N -0.586 5.586 15 C 0.069 3.931 16 C 0.560 3.440 17 O -0.583 6.583 18 C -0.192 4.192 19 C -0.034 4.034 20 C -0.160 4.160 21 C 0.169 3.831 22 C -0.078 4.078 23 C -0.096 4.096 24 C -0.124 4.124 25 C -0.107 4.107 26 C -0.135 4.135 27 C -0.103 4.103 28 N -0.505 5.505 29 C 0.145 3.855 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.032 0.968 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.185 0.815 41 H 0.188 0.812 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.139 0.861 46 H 0.113 0.887 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 -9.856 20.203 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.085 0.915 4 C 0.013 3.987 5 N -0.386 5.386 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.269 4.269 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.226 1.226 13 H -0.199 1.199 14 N -0.317 5.317 15 C -0.073 4.073 16 C 0.349 3.651 17 O -0.464 6.464 18 C -0.197 4.197 19 C -0.059 4.059 20 C -0.179 4.179 21 C 0.033 3.967 22 C -0.079 4.079 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.125 4.125 26 C -0.153 4.153 27 C -0.122 4.122 28 N -0.213 5.213 29 C -0.014 4.014 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.201 0.799 36 H 0.056 0.944 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.202 0.798 41 H 0.205 0.795 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.169 0.831 45 H 0.157 0.843 46 H 0.131 0.869 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.310 -9.128 20.172 24.862 hybrid contribution 0.881 0.338 -1.293 1.601 sum -10.429 -8.790 18.879 23.290 Atomic orbital electron populations 1.21964 0.90673 1.03966 1.03270 1.21370 0.96495 0.96305 0.83325 0.91494 1.21251 0.84026 0.98083 0.95297 1.42527 1.02087 1.69837 1.24120 1.19607 0.89884 1.28438 0.99631 0.90204 1.25611 0.97619 1.03145 1.00555 1.69864 1.06825 1.52764 1.32470 0.85202 0.76957 0.78691 0.78834 1.20400 1.22644 1.19928 1.47672 1.49214 1.13402 1.21396 1.22322 1.01283 0.79885 1.03790 1.18393 0.77840 0.86171 0.82719 1.90738 1.61695 1.17170 1.76797 1.20882 0.97634 1.01799 0.99398 1.22376 1.01215 0.90068 0.92285 1.22409 0.95000 1.02354 0.98110 1.20505 0.91699 0.91256 0.93242 1.18707 0.95215 0.98685 0.95251 1.21574 1.00826 0.93988 0.95061 1.21500 0.95527 1.00282 0.96868 1.21704 0.94982 0.96209 0.99571 1.21400 1.01106 0.97153 0.95650 1.21441 0.94644 0.99220 0.96891 1.67631 1.37303 1.08460 1.07946 1.22610 0.92055 0.95618 0.91117 0.91680 0.90084 0.89980 0.94089 0.94968 0.79939 0.94363 0.88022 0.90188 0.91643 0.79773 0.79461 0.82664 0.82300 0.83056 0.84347 0.86873 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.19 71.98 0.66 -2.43 16 2 C 0.13 4.30 2.79 44.99 0.13 4.43 16 3 H 0.07 2.72 6.91 -2.38 -0.02 2.71 16 4 C 0.14 5.51 5.52 86.38 0.48 5.99 16 5 N -0.74 -39.10 5.43 -343.45 -1.87 -40.97 16 6 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 7 H 0.08 4.27 7.83 -2.92 -0.02 4.25 16 8 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 9 N -0.97 -62.47 13.06 21.65 0.28 -62.19 16 10 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 14 N -0.59 -19.15 2.24 -826.16 -1.85 -21.01 16 15 C 0.07 1.61 7.90 127.77 1.01 2.62 16 16 C 0.56 21.70 7.08 86.74 0.61 22.31 16 17 O -0.58 -27.54 16.24 -3.93 -0.06 -27.60 16 18 C -0.19 -6.49 5.27 -19.97 -0.11 -6.60 16 19 C -0.03 -0.79 7.67 22.70 0.17 -0.61 16 20 C -0.16 -3.29 9.44 22.53 0.21 -3.07 16 21 C 0.17 4.69 6.73 41.97 0.28 4.97 16 22 C -0.08 -1.84 5.88 -20.05 -0.12 -1.96 16 23 C -0.10 -1.51 9.42 22.50 0.21 -1.30 16 24 C -0.12 -1.56 10.03 22.24 0.22 -1.33 16 25 C -0.11 -1.46 10.04 22.32 0.22 -1.24 16 26 C -0.14 -2.49 10.03 22.24 0.22 -2.27 16 27 C -0.10 -2.55 9.57 22.50 0.22 -2.33 16 28 N -0.50 -17.75 9.40 -183.83 -1.73 -19.48 16 29 C 0.14 5.52 10.79 85.08 0.92 6.44 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.44 7.67 -2.39 -0.02 1.42 16 33 H 0.04 1.47 6.86 -2.39 -0.02 1.46 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.37 21.69 7.06 -92.71 -0.65 21.04 16 36 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.10 1.39 6.86 -2.39 -0.02 1.37 16 38 H 0.08 1.91 6.53 -2.39 -0.02 1.90 16 39 H 0.06 1.66 5.83 -2.39 -0.01 1.65 16 40 H 0.19 2.72 5.29 -2.91 -0.02 2.70 16 41 H 0.19 1.98 6.17 -2.91 -0.02 1.96 16 42 H 0.16 1.43 6.17 -2.91 -0.02 1.41 16 43 H 0.16 0.93 8.06 -2.91 -0.02 0.90 16 44 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 45 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 46 H 0.11 3.21 7.53 -2.91 -0.02 3.19 16 47 H 0.14 5.89 8.04 -2.91 -0.02 5.86 16 Total: -1.00 -83.49 385.79 3.80 -79.68 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.35 Total: 35.59 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 6.66 Total: 6.46 kcal Atomic # 7 Polarization: -138.48 SS G_CDS: -5.17 Total: -143.64 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.06 Total: -27.60 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -83.49 3.80 -79.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482346149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.548 kcal (2) G-P(sol) polarization free energy of solvation -83.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds