Wall clock time and date at job start Tue Mar 31 2020 23:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46824 * 2 1 4 4 C 1.53004 * 109.47104 * 119.99413 * 2 1 3 5 5 N 1.46501 * 109.46886 * 175.00088 * 4 2 1 6 6 C 1.36939 * 119.99401 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99453 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99864 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46887 * 60.00366 * 10 8 6 12 12 H 1.48499 * 109.47241 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47353 * 300.00405 * 10 8 6 14 14 N 1.46499 * 109.47190 * 239.99815 * 2 1 3 15 15 C 1.46492 * 120.00070 * 299.99610 * 14 2 1 16 16 C 1.34781 * 119.99801 * 120.00077 * 14 2 1 17 17 O 1.21512 * 120.00064 * 1.44134 * 16 14 2 18 18 C 1.48169 * 119.99716 * 181.43952 * 16 14 2 19 19 C 1.39102 * 119.66905 * 172.67109 * 18 16 14 20 20 C 1.39726 * 118.91974 * 179.97438 * 19 18 16 21 21 C 1.48369 * 120.87335 * 179.97438 * 20 19 18 22 22 C 1.39353 * 120.12230 * 359.72320 * 21 20 19 23 23 C 1.38016 * 119.87747 * 179.79044 * 22 21 20 24 24 C 1.38323 * 120.11874 * 0.48506 * 23 22 21 25 25 C 1.38319 * 120.24922 * 359.74448 * 24 23 22 26 26 C 1.38014 * 120.12290 * 0.02562 * 25 24 23 27 27 C 1.39735 * 118.25543 * 359.97438 * 20 19 18 28 28 C 1.38319 * 119.21403 * 0.02562 * 27 20 19 29 29 N 1.31581 * 121.02529 * 359.73728 * 28 27 20 30 30 H 1.09002 * 109.47710 * 300.00001 * 1 2 3 31 31 H 1.09006 * 109.47431 * 60.00267 * 1 2 3 32 32 H 1.09007 * 109.47407 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47154 * 295.00444 * 4 2 1 34 34 H 1.09002 * 109.46744 * 55.00606 * 4 2 1 35 35 H 0.96995 * 120.00286 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99983 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47621 * 263.91209 * 15 14 2 38 38 H 1.09001 * 109.47329 * 143.91066 * 15 14 2 39 39 H 1.09008 * 109.47051 * 23.91554 * 15 14 2 40 40 H 1.07999 * 120.54166 * 0.02562 * 19 18 16 41 41 H 1.08002 * 120.05848 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.93596 * 180.25086 * 23 22 21 43 43 H 1.07998 * 119.87305 * 179.76917 * 24 23 22 44 44 H 1.08001 * 119.94001 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.06335 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.39021 * 179.97438 * 27 20 19 47 47 H 1.07995 * 119.48603 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1837 -1.4386 2.2069 7 1 3.6466 -1.8444 3.0514 8 6 5.5671 -1.5387 2.1510 9 7 6.2216 -1.0445 1.1216 10 14 6.4999 -2.3734 3.5376 11 1 6.0432 -3.7807 3.6644 12 1 7.9546 -2.3494 3.2404 13 1 6.2434 -1.6532 4.8107 14 7 2.0183 -0.6906 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.7932 -0.0356 -2.0833 17 8 3.1084 1.1198 -1.8780 18 6 3.2607 -0.7245 -3.3090 19 6 3.9294 -0.0025 -4.2921 20 6 4.3639 -0.6679 -5.4413 21 6 5.0808 0.0598 -6.5173 22 6 5.3250 1.4263 -6.3947 23 6 5.9961 2.0974 -7.3968 24 6 6.4171 1.4181 -8.5257 25 6 6.1732 0.0627 -8.6549 26 6 5.5072 -0.6194 -7.6569 27 6 4.1057 -2.0368 -5.5506 28 6 3.4343 -2.6810 -4.5271 29 7 3.0423 -2.0259 -3.4554 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.9824 -0.4621 0.4320 36 1 7.1883 -1.1141 1.0828 37 1 2.4682 -2.7351 -1.0673 38 1 1.5179 -2.2594 -2.4951 39 1 0.7439 -2.3287 -0.8937 40 1 4.1105 1.0551 -4.1688 41 1 4.9923 1.9586 -5.5158 42 1 6.1894 3.1557 -7.3009 43 1 6.9386 1.9480 -9.3091 44 1 6.5038 -0.4626 -9.5387 45 1 5.3176 -1.6777 -7.7586 46 1 4.4258 -2.5852 -6.4242 47 1 3.2320 -3.7388 -4.6072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482349796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:44 Heat of formation + Delta-G solvation = 61.933314 kcal Electronic energy + Delta-G solvation = -28848.939670 eV Core-core repulsion = 24997.857529 eV Total energy + Delta-G solvation = -3851.082141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.79418 -39.48351 -38.58751 -36.30310 -34.23111 -33.61884 -32.08030 -31.49553 -30.77958 -29.98857 -29.66085 -26.48598 -25.61029 -24.84615 -24.26981 -22.81790 -22.28291 -21.82036 -20.68383 -19.04203 -17.75674 -17.17534 -16.98044 -16.47555 -15.94882 -15.66358 -15.37620 -15.20111 -14.70878 -14.64154 -14.31507 -13.90941 -13.76692 -13.52781 -13.48760 -13.36373 -13.19671 -12.91801 -12.57269 -12.30372 -12.25944 -12.15788 -11.81676 -11.76764 -11.45013 -11.37347 -11.09804 -10.77893 -10.71400 -10.50271 -10.38597 -10.00645 -9.87125 -9.61826 -9.22115 -9.19781 -9.03420 -8.79120 -8.56837 -8.08287 -6.81437 -5.65163 -2.94303 0.35624 0.82491 1.14366 1.68355 3.00674 3.30633 3.49034 3.52744 3.54434 3.59265 4.01792 4.20038 4.28333 4.45631 4.66091 4.68984 4.75917 4.83546 4.92010 4.98305 5.12531 5.23169 5.31517 5.37746 5.50439 5.51138 5.61367 5.64756 5.68334 5.73693 5.80654 5.82437 5.88773 6.09453 6.14876 6.15721 6.21523 6.24852 6.28045 6.38744 6.46029 6.50376 6.56336 6.65789 6.69404 6.83141 7.10907 7.71368 7.76581 7.86690 8.52062 8.55196 9.63306 10.23105 10.58387 11.56916 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.003049 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.591236 B = 9181.342220 C =10313.776874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.123 3.877 3 H 0.100 0.900 4 C 0.145 3.855 5 N -0.727 5.727 6 C -0.239 4.239 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 N -0.574 5.574 15 C 0.082 3.918 16 C 0.569 3.431 17 O -0.536 6.536 18 C 0.100 3.900 19 C -0.104 4.104 20 C -0.009 4.009 21 C -0.050 4.050 22 C -0.100 4.100 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.104 4.104 27 C -0.151 4.151 28 C 0.096 3.904 29 N -0.445 5.445 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.386 0.614 36 H 0.254 0.746 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.139 0.861 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 0.143 -21.533 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.019 3.981 3 H 0.118 0.882 4 C 0.017 3.983 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.213 1.213 14 N -0.304 5.304 15 C -0.061 4.061 16 C 0.355 3.645 17 O -0.413 6.413 18 C -0.038 4.038 19 C -0.125 4.125 20 C -0.017 4.017 21 C -0.050 4.050 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.139 4.139 26 C -0.122 4.122 27 C -0.170 4.170 28 C -0.062 4.062 29 N -0.157 5.157 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.220 0.780 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.166 0.834 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.156 0.844 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -7.582 0.238 -20.548 21.903 hybrid contribution 1.364 -0.148 -0.041 1.373 sum -6.218 0.090 -20.589 21.508 Atomic orbital electron populations 1.22063 0.95058 1.02170 1.02017 1.21467 0.93344 0.98522 0.84727 0.88204 1.20995 0.87153 0.96781 0.93416 1.42288 0.99677 1.70064 1.25145 1.19161 0.89413 1.29393 0.99081 0.91362 1.24743 0.96451 1.01753 0.97997 1.69686 1.07083 1.50782 1.30195 0.86291 0.79024 0.79241 0.81744 1.21381 1.21773 1.21347 1.47531 1.48736 1.12912 1.21218 1.22257 0.99989 0.80728 1.03112 1.17778 0.78760 0.85619 0.82314 1.90765 1.57162 1.16929 1.76427 1.21147 0.97444 0.90138 0.95032 1.22138 0.96003 1.02156 0.92208 1.19073 0.95937 0.93360 0.93344 1.18667 0.99162 0.93478 0.93707 1.21391 0.97718 0.93491 0.99261 1.21145 0.98293 1.00286 0.93850 1.21271 0.99496 0.94657 0.97885 1.21087 0.99225 0.94655 0.98977 1.21226 0.97931 0.99974 0.93047 1.22342 0.99747 0.94144 1.00807 1.22852 0.94168 1.00391 0.88787 1.68137 1.17114 1.08010 1.22431 0.91331 0.92671 0.92217 0.95459 0.96116 0.77962 0.93621 0.91828 0.88487 0.92758 0.83365 0.85135 0.85539 0.85903 0.85730 0.85545 0.84377 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.18 37.15 0.34 -1.76 16 2 C 0.12 2.24 2.79 -67.93 -0.19 2.05 16 3 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 4 C 0.15 3.09 5.56 -4.04 -0.02 3.07 16 5 N -0.73 -19.72 5.43 -59.90 -0.33 -20.05 16 6 C -0.24 -7.02 9.99 -15.06 -0.15 -7.17 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -29.70 13.06 55.49 0.72 -28.98 16 10 Si 0.91 23.28 29.55 -169.99 -5.02 18.26 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 N -0.57 -10.58 2.24 -174.93 -0.39 -10.97 16 15 C 0.08 1.31 8.40 59.84 0.50 1.81 16 16 C 0.57 11.32 7.36 -12.18 -0.09 11.23 16 17 O -0.54 -12.04 15.67 5.36 0.08 -11.95 16 18 C 0.10 1.72 6.61 -83.06 -0.55 1.17 16 19 C -0.10 -1.59 9.02 -38.71 -0.35 -1.94 16 20 C -0.01 -0.12 5.91 -104.61 -0.62 -0.74 16 21 C -0.05 -0.57 5.88 -104.90 -0.62 -1.18 16 22 C -0.10 -1.10 9.45 -39.25 -0.37 -1.47 16 23 C -0.12 -1.09 10.03 -39.63 -0.40 -1.48 16 24 C -0.11 -0.94 10.04 -39.52 -0.40 -1.34 16 25 C -0.12 -0.99 10.03 -39.63 -0.40 -1.39 16 26 C -0.10 -0.96 9.45 -39.25 -0.37 -1.33 16 27 C -0.15 -1.62 9.51 -38.99 -0.37 -1.99 16 28 C 0.10 1.13 11.17 -17.63 -0.20 0.93 16 29 N -0.44 -6.76 6.04 -9.89 -0.06 -6.82 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.75 6.67 -51.92 -0.35 0.40 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 35 H 0.39 11.41 7.06 -40.82 -0.29 11.12 16 36 H 0.25 7.87 8.31 -40.82 -0.34 7.53 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.10 1.40 5.32 -51.95 -0.28 1.13 16 39 H 0.05 0.75 6.44 -51.92 -0.33 0.42 16 40 H 0.15 2.22 5.94 -52.49 -0.31 1.91 16 41 H 0.13 1.40 6.30 -52.49 -0.33 1.07 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 46 H 0.14 1.02 6.33 -52.49 -0.33 0.68 16 47 H 0.16 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -36.10 385.22 -9.77 -45.87 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.24 Total: 10.86 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.34 Total: -2.03 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: -0.05 Total: -66.82 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.10 -9.77 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482349796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.806 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds