Wall clock time and date at job start Tue Mar 31 2020 23:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.46824 * 2 1 4 4 C 1.53004 * 109.47104 * 119.99413 * 2 1 3 5 5 N 1.46501 * 109.46886 * 175.00088 * 4 2 1 6 6 C 1.36939 * 119.99401 * 180.02562 * 5 4 2 7 7 H 1.07996 * 120.00388 * 0.02562 * 6 5 4 8 8 C 1.38815 * 119.99453 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00131 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99864 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46887 * 60.00366 * 10 8 6 12 12 H 1.48499 * 109.47241 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47353 * 300.00405 * 10 8 6 14 14 N 1.46499 * 109.47190 * 239.99815 * 2 1 3 15 15 C 1.46492 * 120.00070 * 299.99610 * 14 2 1 16 16 C 1.34781 * 119.99801 * 120.00077 * 14 2 1 17 17 O 1.21512 * 120.00064 * 1.44134 * 16 14 2 18 18 C 1.48169 * 119.99716 * 181.43952 * 16 14 2 19 19 C 1.39102 * 119.66905 * 172.67109 * 18 16 14 20 20 C 1.39726 * 118.91974 * 179.97438 * 19 18 16 21 21 C 1.48369 * 120.87335 * 179.97438 * 20 19 18 22 22 C 1.39353 * 120.12230 * 359.72320 * 21 20 19 23 23 C 1.38016 * 119.87747 * 179.79044 * 22 21 20 24 24 C 1.38323 * 120.11874 * 0.48506 * 23 22 21 25 25 C 1.38319 * 120.24922 * 359.74448 * 24 23 22 26 26 C 1.38014 * 120.12290 * 0.02562 * 25 24 23 27 27 C 1.39735 * 118.25543 * 359.97438 * 20 19 18 28 28 C 1.38319 * 119.21403 * 0.02562 * 27 20 19 29 29 N 1.31581 * 121.02529 * 359.73728 * 28 27 20 30 30 H 1.09002 * 109.47710 * 300.00001 * 1 2 3 31 31 H 1.09006 * 109.47431 * 60.00267 * 1 2 3 32 32 H 1.09007 * 109.47407 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47154 * 295.00444 * 4 2 1 34 34 H 1.09002 * 109.46744 * 55.00606 * 4 2 1 35 35 H 0.96995 * 120.00286 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99983 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47621 * 263.91209 * 15 14 2 38 38 H 1.09001 * 109.47329 * 143.91066 * 15 14 2 39 39 H 1.09008 * 109.47051 * 23.91554 * 15 14 2 40 40 H 1.07999 * 120.54166 * 0.02562 * 19 18 16 41 41 H 1.08002 * 120.05848 * 359.97438 * 22 21 20 42 42 H 1.08001 * 119.93596 * 180.25086 * 23 22 21 43 43 H 1.07998 * 119.87305 * 179.76917 * 24 23 22 44 44 H 1.08001 * 119.94001 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.06335 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.39021 * 179.97438 * 27 20 19 47 47 H 1.07995 * 119.48603 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1837 -1.4386 2.2069 7 1 3.6466 -1.8444 3.0514 8 6 5.5671 -1.5387 2.1510 9 7 6.2216 -1.0445 1.1216 10 14 6.4999 -2.3734 3.5376 11 1 6.0432 -3.7807 3.6644 12 1 7.9546 -2.3494 3.2404 13 1 6.2434 -1.6532 4.8107 14 7 2.0183 -0.6906 -1.1961 15 6 1.6645 -2.0932 -1.4279 16 6 2.7932 -0.0356 -2.0833 17 8 3.1084 1.1198 -1.8780 18 6 3.2607 -0.7245 -3.3090 19 6 3.9294 -0.0025 -4.2921 20 6 4.3639 -0.6679 -5.4413 21 6 5.0808 0.0598 -6.5173 22 6 5.3250 1.4263 -6.3947 23 6 5.9961 2.0974 -7.3968 24 6 6.4171 1.4181 -8.5257 25 6 6.1732 0.0627 -8.6549 26 6 5.5072 -0.6194 -7.6569 27 6 4.1057 -2.0368 -5.5506 28 6 3.4343 -2.6810 -4.5271 29 7 3.0423 -2.0259 -3.4554 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6054 -1.7197 1.2952 35 1 3.9824 -0.4621 0.4320 36 1 7.1883 -1.1141 1.0828 37 1 2.4682 -2.7351 -1.0673 38 1 1.5179 -2.2594 -2.4951 39 1 0.7439 -2.3287 -0.8937 40 1 4.1105 1.0551 -4.1688 41 1 4.9923 1.9586 -5.5158 42 1 6.1894 3.1557 -7.3009 43 1 6.9386 1.9480 -9.3091 44 1 6.5038 -0.4626 -9.5387 45 1 5.3176 -1.6777 -7.7586 46 1 4.4258 -2.5852 -6.4242 47 1 3.2320 -3.7388 -4.6072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482349796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:42 Heat of formation + Delta-G solvation = 40.053157 kcal Electronic energy + Delta-G solvation = -28849.888465 eV Core-core repulsion = 24997.857529 eV Total energy + Delta-G solvation = -3852.030936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.93700 -40.60107 -39.57251 -37.90893 -35.93186 -34.86107 -33.54779 -32.66757 -31.90960 -31.46354 -30.56353 -27.84449 -27.40690 -26.03939 -25.18901 -24.50115 -23.50610 -22.67277 -21.90034 -20.44264 -19.14760 -18.77250 -18.35462 -17.54136 -17.02560 -16.81645 -16.70761 -16.62426 -16.19597 -15.52293 -15.47943 -15.32915 -15.18024 -14.93157 -14.77478 -14.38467 -14.22846 -14.10209 -13.85651 -13.80100 -13.72588 -13.25790 -13.20044 -13.00055 -12.86674 -12.75522 -12.54409 -12.20355 -12.18101 -11.86280 -11.81518 -11.74978 -11.41388 -11.34121 -10.96213 -10.30824 -10.19223 -9.91083 -9.56513 -9.36896 -9.02416 -7.94706 -5.25515 -0.56307 -0.25529 0.44841 0.82302 1.42499 1.47505 1.53516 1.70399 1.96937 2.53885 2.68828 3.00173 3.10993 3.34257 3.37636 3.58010 3.78565 3.88108 3.94264 3.99641 4.04720 4.07604 4.24407 4.28425 4.37707 4.41345 4.46336 4.52451 4.55519 4.66046 4.70821 4.79015 4.86394 4.89086 4.94544 5.00456 5.04251 5.10443 5.12301 5.19276 5.32042 5.44631 5.47926 5.55207 5.56741 5.61179 5.72291 6.02061 6.23819 6.34579 6.71175 7.09761 7.29848 8.06457 8.30184 9.28405 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011093 B = 0.003049 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.591236 B = 9181.342220 C =10313.776874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.124 3.876 3 H 0.070 0.930 4 C 0.143 3.857 5 N -0.743 5.743 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.080 4.080 9 N -0.972 5.972 10 Si 0.979 3.021 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.277 1.277 14 N -0.575 5.575 15 C 0.088 3.912 16 C 0.555 3.445 17 O -0.581 6.581 18 C 0.069 3.931 19 C -0.122 4.122 20 C -0.010 4.010 21 C -0.075 4.075 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.103 4.103 27 C -0.132 4.132 28 C 0.096 3.904 29 N -0.463 5.463 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.033 0.967 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.139 0.861 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.153 0.847 46 H 0.183 0.817 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 -2.395 -23.479 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.088 0.912 4 C 0.016 3.984 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.098 0.902 8 C -0.272 4.272 9 N -0.623 5.623 10 Si 0.808 3.192 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.203 1.203 14 N -0.304 5.304 15 C -0.053 4.053 16 C 0.343 3.657 17 O -0.462 6.462 18 C -0.067 4.067 19 C -0.144 4.144 20 C -0.018 4.018 21 C -0.075 4.075 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.121 4.121 27 C -0.152 4.152 28 C -0.063 4.063 29 N -0.176 5.176 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.200 0.800 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.150 0.850 41 H 0.132 0.868 42 H 0.157 0.843 43 H 0.168 0.832 44 H 0.175 0.825 45 H 0.171 0.829 46 H 0.201 0.799 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.196 -2.320 -22.461 24.022 hybrid contribution 1.541 0.649 0.432 1.727 sum -6.655 -1.671 -22.030 23.073 Atomic orbital electron populations 1.21977 0.90824 1.03777 1.03340 1.21432 0.96430 0.96445 0.83659 0.91219 1.21210 0.84131 0.97824 0.95223 1.42530 1.02041 1.69831 1.24141 1.19646 0.90012 1.28449 0.99546 0.90205 1.25676 0.97567 1.03177 1.00759 1.69902 1.06809 1.52916 1.32650 0.85127 0.76898 0.78610 0.78592 1.19919 1.22367 1.20287 1.47689 1.48214 1.13756 1.20749 1.22301 0.99689 0.78699 1.04643 1.18395 0.78358 0.85470 0.83471 1.90709 1.58835 1.18895 1.77735 1.20808 0.99913 0.91309 0.94661 1.22122 0.97020 1.01751 0.93466 1.19331 0.95392 0.94464 0.92622 1.18762 1.00585 0.93618 0.94507 1.21474 0.99077 0.94126 0.99665 1.21381 0.98157 1.01148 0.93971 1.21670 0.98517 0.95140 0.97722 1.21515 0.98125 0.94690 0.99575 1.21549 0.97173 1.01252 0.92095 1.22822 0.97566 0.93138 1.01641 1.23606 0.93028 1.01959 0.87702 1.68017 1.18330 1.06969 1.24240 0.89573 0.91832 0.90353 0.94754 0.94676 0.79969 0.94333 0.94873 0.86737 0.90226 0.85004 0.86815 0.84306 0.83180 0.82547 0.82910 0.79938 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.18 71.98 0.66 -3.00 16 2 C 0.12 4.65 2.79 44.99 0.13 4.78 16 3 H 0.07 3.04 6.90 -2.39 -0.02 3.02 16 4 C 0.14 6.16 5.56 86.38 0.48 6.64 16 5 N -0.74 -41.67 5.43 -343.44 -1.87 -43.53 16 6 C -0.24 -14.57 9.99 84.03 0.84 -13.73 16 7 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 8 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 9 N -0.97 -64.53 13.06 21.65 0.28 -64.24 16 10 Si 0.98 48.58 29.55 68.60 2.03 50.60 16 11 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 N -0.57 -22.13 2.24 -825.66 -1.85 -23.98 16 15 C 0.09 2.84 8.40 127.77 1.07 3.91 16 16 C 0.56 23.92 7.36 86.88 0.64 24.56 16 17 O -0.58 -28.90 15.67 -3.75 -0.06 -28.96 16 18 C 0.07 2.53 6.61 41.85 0.28 2.80 16 19 C -0.12 -4.07 9.02 22.84 0.21 -3.86 16 20 C -0.01 -0.26 5.91 -19.86 -0.12 -0.38 16 21 C -0.07 -1.67 5.88 -20.04 -0.12 -1.79 16 22 C -0.13 -2.92 9.45 22.49 0.21 -2.71 16 23 C -0.13 -2.35 10.03 22.24 0.22 -2.13 16 24 C -0.11 -1.58 10.04 22.31 0.22 -1.36 16 25 C -0.12 -1.57 10.03 22.24 0.22 -1.35 16 26 C -0.10 -1.62 9.45 22.48 0.21 -1.41 16 27 C -0.13 -2.53 9.51 22.65 0.22 -2.31 16 28 C 0.10 2.05 11.17 84.75 0.95 3.00 16 29 N -0.46 -14.21 6.04 -185.19 -1.12 -15.32 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 1.75 6.67 -2.38 -0.02 1.73 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.43 7.84 -2.39 -0.02 1.41 16 35 H 0.37 23.07 7.06 -92.71 -0.65 22.41 16 36 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 3.28 5.32 -2.42 -0.01 3.26 16 39 H 0.08 2.09 6.44 -2.38 -0.02 2.07 16 40 H 0.13 4.62 5.94 -2.91 -0.02 4.61 16 41 H 0.11 2.90 6.30 -2.91 -0.02 2.88 16 42 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 45 H 0.15 1.47 6.29 -2.91 -0.02 1.45 16 46 H 0.18 1.79 6.33 -2.91 -0.02 1.77 16 47 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -84.34 385.22 4.55 -79.79 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.35 Total: 38.41 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.79 Total: 7.23 kcal Atomic # 7 Polarization: -142.52 SS G_CDS: -4.56 Total: -147.08 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.06 Total: -28.96 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.60 kcal Total: -84.34 4.55 -79.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482349796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.845 kcal (2) G-P(sol) polarization free energy of solvation -84.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds