Wall clock time and date at job start Tue Mar 31 2020 23:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47152 * 2 1 4 4 C 1.52995 * 109.47139 * 239.99272 * 2 1 3 5 5 N 1.46505 * 109.47273 * 184.99742 * 4 2 1 6 6 C 1.36936 * 119.99900 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99762 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99951 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 119.99857 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47474 * 90.00196 * 10 8 6 12 12 H 1.48504 * 109.47249 * 210.00416 * 10 8 6 13 13 H 1.48506 * 109.47244 * 330.00050 * 10 8 6 14 14 N 1.46509 * 109.47068 * 119.99600 * 2 1 3 15 15 C 1.46497 * 119.99801 * 59.99868 * 14 2 1 16 16 C 1.34775 * 120.00009 * 239.99928 * 14 2 1 17 17 O 1.21519 * 119.99894 * 2.09088 * 16 14 2 18 18 C 1.48176 * 119.99917 * 182.08872 * 16 14 2 19 19 C 1.39097 * 119.66801 * 172.79255 * 18 16 14 20 20 C 1.39719 * 118.91617 * 180.02562 * 19 18 16 21 21 C 1.48376 * 120.87269 * 180.02562 * 20 19 18 22 22 C 1.39358 * 120.11866 * 359.70473 * 21 20 19 23 23 C 1.38019 * 119.86957 * 179.69924 * 22 21 20 24 24 C 1.38322 * 120.12663 * 0.60114 * 23 22 21 25 25 C 1.38331 * 120.24251 * 359.66806 * 24 23 22 26 26 C 1.38011 * 120.12339 * 0.02907 * 25 24 23 27 27 C 1.39733 * 118.25780 * 359.97438 * 20 19 18 28 28 C 1.38312 * 119.21429 * 0.02562 * 27 20 19 29 29 N 1.31580 * 121.02529 * 359.97438 * 28 27 20 30 30 H 1.08999 * 109.47485 * 60.00174 * 1 2 3 31 31 H 1.09006 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47059 * 300.00230 * 1 2 3 33 33 H 1.08998 * 109.47696 * 305.00220 * 4 2 1 34 34 H 1.09011 * 109.46971 * 65.00367 * 4 2 1 35 35 H 0.96999 * 119.99685 * 0.02562 * 5 4 2 36 36 H 0.97002 * 120.00032 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.47610 * 263.76758 * 15 14 2 38 38 H 1.09002 * 109.47391 * 23.77121 * 15 14 2 39 39 H 1.09000 * 109.46759 * 143.76183 * 15 14 2 40 40 H 1.08001 * 120.54052 * 0.04462 * 19 18 16 41 41 H 1.07998 * 120.06412 * 359.97438 * 22 21 20 42 42 H 1.08004 * 119.93400 * 180.29227 * 23 22 21 43 43 H 1.07992 * 119.87616 * 179.70225 * 24 23 22 44 44 H 1.07999 * 119.93137 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.05961 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.38969 * 179.97438 * 27 20 19 47 47 H 1.07997 * 119.48916 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1838 -1.4381 -2.2071 7 1 3.6468 -1.8427 -3.0522 8 6 5.5673 -1.5382 -2.1512 9 7 6.2216 -1.0456 -1.1210 10 14 6.5001 -2.3719 -3.5383 11 1 6.8629 -1.3641 -4.5668 12 1 7.7352 -2.9958 -2.9993 13 1 5.6438 -3.4188 -4.1515 14 7 2.0183 -0.6906 1.1963 15 6 1.6643 -2.0931 1.4282 16 6 2.7931 -0.0355 2.0834 17 8 3.0554 1.1384 1.9106 18 6 3.3252 -0.7468 3.2694 19 6 4.2433 -0.1112 4.0989 20 6 4.7351 -0.7967 5.2126 21 6 5.7154 -0.1601 6.1266 22 6 6.1637 1.1358 5.8784 23 6 7.0709 1.7253 6.7355 24 6 7.5444 1.0278 7.8320 25 6 7.1070 -0.2609 8.0800 26 6 6.1953 -0.8579 7.2332 27 6 4.2789 -2.0970 5.4437 28 6 3.3645 -2.6569 4.5699 29 7 2.9208 -1.9843 3.5298 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7199 -1.2950 34 1 1.7516 -0.1585 -2.1370 35 1 3.9823 -0.4628 -0.4315 36 1 7.1883 -1.1151 -1.0821 37 1 0.8010 -2.1451 2.0914 38 1 1.4216 -2.5685 0.4778 39 1 2.5072 -2.6093 1.8877 40 1 4.5703 0.8957 3.8856 41 1 5.7987 1.6794 5.0196 42 1 7.4154 2.7314 6.5467 43 1 8.2578 1.4912 8.4973 44 1 7.4797 -0.8008 8.9380 45 1 5.8542 -1.8640 7.4280 46 1 4.6366 -2.6585 6.2941 47 1 3.0086 -3.6615 4.7446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482349798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:47 Heat of formation + Delta-G solvation = 61.344716 kcal Electronic energy + Delta-G solvation = -28920.792633 eV Core-core repulsion = 25069.684968 eV Total energy + Delta-G solvation = -3851.107665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78019 -39.46523 -38.57265 -36.31590 -34.22562 -33.61522 -32.07503 -31.47829 -30.76333 -29.98970 -29.64567 -26.46676 -25.63216 -24.84196 -24.24657 -22.81411 -22.29003 -21.79765 -20.67433 -19.04332 -17.73575 -17.16643 -17.00030 -16.46048 -15.92750 -15.64792 -15.34170 -15.23229 -14.68906 -14.65762 -14.29275 -13.90954 -13.75131 -13.50662 -13.47232 -13.34593 -13.20617 -12.90948 -12.58383 -12.30390 -12.21552 -12.10751 -11.92174 -11.71580 -11.42808 -11.38585 -11.06448 -10.81604 -10.70978 -10.48174 -10.41680 -10.00883 -9.86659 -9.64486 -9.19174 -9.16940 -9.01907 -8.81643 -8.53595 -8.10020 -6.84045 -5.68069 -2.97052 0.37983 0.84866 1.18127 1.70663 3.01440 3.29767 3.47136 3.51609 3.53579 3.62825 4.06184 4.19775 4.28440 4.48244 4.64275 4.72284 4.78470 4.85942 4.94861 5.00931 5.15677 5.25194 5.34559 5.39953 5.52117 5.53677 5.61292 5.66286 5.68222 5.81210 5.84272 5.85329 5.92113 6.05008 6.10152 6.17848 6.22133 6.25779 6.28603 6.38548 6.43467 6.45830 6.59667 6.69877 6.73004 6.82551 7.11003 7.71179 7.74984 7.86294 8.49288 8.54539 9.60704 10.19951 10.55275 11.54198 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.003294 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.621368 B = 8498.936566 C = 9956.776924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.239 4.239 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.929 5.929 10 Si 0.905 3.095 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.573 5.573 15 C 0.083 3.917 16 C 0.570 3.430 17 O -0.538 6.538 18 C 0.100 3.900 19 C -0.101 4.101 20 C -0.008 4.008 21 C -0.050 4.050 22 C -0.099 4.099 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.150 4.150 28 C 0.095 3.905 29 N -0.447 5.447 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.029 0.971 35 H 0.385 0.615 36 H 0.254 0.746 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.138 0.862 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -0.505 20.290 20.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.020 3.980 3 H 0.118 0.882 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.303 5.303 15 C -0.060 4.060 16 C 0.356 3.644 17 O -0.415 6.415 18 C -0.038 4.038 19 C -0.122 4.122 20 C -0.016 4.016 21 C -0.051 4.051 22 C -0.117 4.117 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.170 4.170 28 C -0.063 4.063 29 N -0.160 5.160 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.047 0.953 35 H 0.220 0.780 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.122 0.878 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.156 0.844 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.838 -0.351 19.428 20.289 hybrid contribution 1.474 -0.180 -0.030 1.485 sum -4.364 -0.531 19.397 19.889 Atomic orbital electron populations 1.22039 0.94980 1.02171 1.01966 1.21470 0.93460 0.98500 0.84617 0.88201 1.21015 0.87108 0.96845 0.93511 1.42295 0.99692 1.70132 1.25085 1.19208 0.89423 1.29346 0.99003 0.91279 1.24737 0.96443 1.01763 0.97995 1.69690 1.07038 1.50951 1.30109 0.86214 0.79528 0.79007 0.81581 1.21776 1.21883 1.20826 1.47534 1.48475 1.12967 1.21371 1.22235 1.02125 0.80993 1.00647 1.17792 0.78603 0.85943 0.82024 1.90759 1.59264 1.15578 1.75872 1.21124 0.96014 0.90916 0.95733 1.22145 0.95449 1.01675 0.92925 1.19077 0.94958 0.93714 0.93871 1.18666 0.96998 0.94392 0.94996 1.21403 0.96674 0.94267 0.99403 1.21149 0.97315 1.00274 0.94832 1.21271 0.99604 0.94852 0.97561 1.21083 0.97783 0.95502 0.99630 1.21216 0.97143 0.99768 0.94048 1.22330 0.98425 0.95051 1.01218 1.22830 0.93877 0.99994 0.89628 1.68124 1.24690 1.06451 1.16723 0.91399 0.92291 0.92685 0.96020 0.95336 0.78047 0.93657 0.93480 0.91957 0.87774 0.83310 0.85088 0.85525 0.85910 0.85749 0.85571 0.84386 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 37.15 0.34 -1.77 16 2 C 0.12 2.24 2.79 -67.93 -0.19 2.05 16 3 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16 4 C 0.14 3.03 5.52 -4.04 -0.02 3.01 16 5 N -0.73 -19.49 5.43 -59.90 -0.33 -19.82 16 6 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 9 N -0.93 -29.35 13.06 55.49 0.72 -28.63 16 10 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 N -0.57 -10.59 2.24 -174.93 -0.39 -10.99 16 15 C 0.08 1.33 8.32 59.85 0.50 1.83 16 16 C 0.57 11.37 7.36 -12.18 -0.09 11.28 16 17 O -0.54 -12.02 15.67 5.35 0.08 -11.93 16 18 C 0.10 1.73 6.62 -83.06 -0.55 1.18 16 19 C -0.10 -1.60 9.01 -38.71 -0.35 -1.94 16 20 C -0.01 -0.11 5.91 -104.61 -0.62 -0.73 16 21 C -0.05 -0.60 5.88 -104.89 -0.62 -1.21 16 22 C -0.10 -1.15 9.45 -39.24 -0.37 -1.52 16 23 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 24 C -0.11 -0.99 10.04 -39.52 -0.40 -1.39 16 25 C -0.12 -1.04 10.03 -39.63 -0.40 -1.44 16 26 C -0.10 -1.00 9.45 -39.25 -0.37 -1.37 16 27 C -0.15 -1.65 9.51 -39.00 -0.37 -2.02 16 28 C 0.09 1.11 11.17 -17.63 -0.20 0.91 16 29 N -0.45 -6.73 6.02 -9.89 -0.06 -6.79 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 34 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.39 11.23 7.06 -40.82 -0.29 10.94 16 36 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.00 6.54 -51.93 -0.34 0.66 16 39 H 0.10 1.78 5.26 -52.10 -0.27 1.51 16 40 H 0.15 2.34 5.94 -52.49 -0.31 2.03 16 41 H 0.13 1.51 6.30 -52.49 -0.33 1.18 16 42 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.13 0.93 6.29 -52.48 -0.33 0.60 16 46 H 0.14 1.04 6.33 -52.49 -0.33 0.71 16 47 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -35.48 385.19 -9.78 -45.26 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.25 Total: 11.29 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.34 Total: -2.26 kcal Atomic # 7 Polarization: -66.17 SS G_CDS: -0.05 Total: -66.23 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.48 -9.78 -45.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482349798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.606 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds