Wall clock time and date at job start Tue Mar 31 2020 23:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08993 * 109.47152 * 2 1 4 4 C 1.52995 * 109.47139 * 239.99272 * 2 1 3 5 5 N 1.46505 * 109.47273 * 184.99742 * 4 2 1 6 6 C 1.36936 * 119.99900 * 180.02562 * 5 4 2 7 7 H 1.07995 * 120.00039 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99762 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99951 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 119.99857 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47474 * 90.00196 * 10 8 6 12 12 H 1.48504 * 109.47249 * 210.00416 * 10 8 6 13 13 H 1.48506 * 109.47244 * 330.00050 * 10 8 6 14 14 N 1.46509 * 109.47068 * 119.99600 * 2 1 3 15 15 C 1.46497 * 119.99801 * 59.99868 * 14 2 1 16 16 C 1.34775 * 120.00009 * 239.99928 * 14 2 1 17 17 O 1.21519 * 119.99894 * 2.09088 * 16 14 2 18 18 C 1.48176 * 119.99917 * 182.08872 * 16 14 2 19 19 C 1.39097 * 119.66801 * 172.79255 * 18 16 14 20 20 C 1.39719 * 118.91617 * 180.02562 * 19 18 16 21 21 C 1.48376 * 120.87269 * 180.02562 * 20 19 18 22 22 C 1.39358 * 120.11866 * 359.70473 * 21 20 19 23 23 C 1.38019 * 119.86957 * 179.69924 * 22 21 20 24 24 C 1.38322 * 120.12663 * 0.60114 * 23 22 21 25 25 C 1.38331 * 120.24251 * 359.66806 * 24 23 22 26 26 C 1.38011 * 120.12339 * 0.02907 * 25 24 23 27 27 C 1.39733 * 118.25780 * 359.97438 * 20 19 18 28 28 C 1.38312 * 119.21429 * 0.02562 * 27 20 19 29 29 N 1.31580 * 121.02529 * 359.97438 * 28 27 20 30 30 H 1.08999 * 109.47485 * 60.00174 * 1 2 3 31 31 H 1.09006 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47059 * 300.00230 * 1 2 3 33 33 H 1.08998 * 109.47696 * 305.00220 * 4 2 1 34 34 H 1.09011 * 109.46971 * 65.00367 * 4 2 1 35 35 H 0.96999 * 119.99685 * 0.02562 * 5 4 2 36 36 H 0.97002 * 120.00032 * 180.02562 * 9 8 6 37 37 H 1.08995 * 109.47610 * 263.76758 * 15 14 2 38 38 H 1.09002 * 109.47391 * 23.77121 * 15 14 2 39 39 H 1.09000 * 109.46759 * 143.76183 * 15 14 2 40 40 H 1.08001 * 120.54052 * 0.04462 * 19 18 16 41 41 H 1.07998 * 120.06412 * 359.97438 * 22 21 20 42 42 H 1.08004 * 119.93400 * 180.29227 * 23 22 21 43 43 H 1.07992 * 119.87616 * 179.70225 * 24 23 22 44 44 H 1.07999 * 119.93137 * 180.02562 * 25 24 23 45 45 H 1.08004 * 120.05961 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.38969 * 179.97438 * 27 20 19 47 47 H 1.07997 * 119.48916 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1905 6 6 4.1838 -1.4381 -2.2071 7 1 3.6468 -1.8427 -3.0522 8 6 5.5673 -1.5382 -2.1512 9 7 6.2216 -1.0456 -1.1210 10 14 6.5001 -2.3719 -3.5383 11 1 6.8629 -1.3641 -4.5668 12 1 7.7352 -2.9958 -2.9993 13 1 5.6438 -3.4188 -4.1515 14 7 2.0183 -0.6906 1.1963 15 6 1.6643 -2.0931 1.4282 16 6 2.7931 -0.0355 2.0834 17 8 3.0554 1.1384 1.9106 18 6 3.3252 -0.7468 3.2694 19 6 4.2433 -0.1112 4.0989 20 6 4.7351 -0.7967 5.2126 21 6 5.7154 -0.1601 6.1266 22 6 6.1637 1.1358 5.8784 23 6 7.0709 1.7253 6.7355 24 6 7.5444 1.0278 7.8320 25 6 7.1070 -0.2609 8.0800 26 6 6.1953 -0.8579 7.2332 27 6 4.2789 -2.0970 5.4437 28 6 3.3645 -2.6569 4.5699 29 7 2.9208 -1.9843 3.5298 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6053 -1.7199 -1.2950 34 1 1.7516 -0.1585 -2.1370 35 1 3.9823 -0.4628 -0.4315 36 1 7.1883 -1.1151 -1.0821 37 1 0.8010 -2.1451 2.0914 38 1 1.4216 -2.5685 0.4778 39 1 2.5072 -2.6093 1.8877 40 1 4.5703 0.8957 3.8856 41 1 5.7987 1.6794 5.0196 42 1 7.4154 2.7314 6.5467 43 1 8.2578 1.4912 8.4973 44 1 7.4797 -0.8008 8.9380 45 1 5.8542 -1.8640 7.4280 46 1 4.6366 -2.6585 6.2941 47 1 3.0086 -3.6615 4.7446 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482349798.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:46 Heat of formation + Delta-G solvation = 40.152127 kcal Electronic energy + Delta-G solvation = -28921.711612 eV Core-core repulsion = 25069.684968 eV Total energy + Delta-G solvation = -3852.026644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93292 -40.60078 -39.57138 -37.91701 -35.92556 -34.85841 -33.54367 -32.66601 -31.91285 -31.46356 -30.56506 -27.81483 -27.43004 -26.03367 -25.18962 -24.51313 -23.50686 -22.67302 -21.90119 -20.44654 -19.14519 -18.77642 -18.35465 -17.54171 -17.02647 -16.77000 -16.72602 -16.64736 -16.21438 -15.52938 -15.49418 -15.30736 -15.17949 -14.94445 -14.76901 -14.39629 -14.22967 -14.04433 -13.86081 -13.79014 -13.68392 -13.25280 -13.21201 -13.05948 -12.86876 -12.80040 -12.51124 -12.18734 -12.16609 -11.87674 -11.82441 -11.76257 -11.41751 -11.32858 -10.97050 -10.29911 -10.19974 -9.91560 -9.55225 -9.36418 -9.02488 -7.95008 -5.25613 -0.56230 -0.24850 0.44345 0.82304 1.43227 1.46503 1.54757 1.70265 1.96621 2.53840 2.70646 3.02563 3.06577 3.34828 3.37852 3.58573 3.78569 3.88506 3.94605 3.99658 4.04452 4.08212 4.24128 4.27844 4.39211 4.40573 4.44407 4.52128 4.55420 4.66124 4.71634 4.81499 4.84049 4.90060 4.94121 4.99658 5.03306 5.08525 5.10702 5.22459 5.31914 5.45169 5.48049 5.54900 5.56394 5.61171 5.73940 6.01775 6.23765 6.34460 6.70417 7.09416 7.29971 8.05750 8.29775 9.28297 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009995 B = 0.003294 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.621368 B = 8498.936566 C = 9956.776924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.124 3.876 3 H 0.069 0.931 4 C 0.142 3.858 5 N -0.743 5.743 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.079 4.079 9 N -0.971 5.971 10 Si 0.978 3.022 11 H -0.288 1.288 12 H -0.297 1.297 13 H -0.264 1.264 14 N -0.574 5.574 15 C 0.087 3.913 16 C 0.556 3.444 17 O -0.582 6.582 18 C 0.069 3.931 19 C -0.124 4.124 20 C -0.011 4.011 21 C -0.075 4.075 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.102 4.102 27 C -0.133 4.133 28 C 0.096 3.904 29 N -0.459 5.459 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.036 0.964 35 H 0.369 0.631 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.155 0.845 46 H 0.184 0.816 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -3.378 22.139 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.021 3.979 3 H 0.087 0.913 4 C 0.015 3.985 5 N -0.385 5.385 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.270 4.270 9 N -0.622 5.622 10 Si 0.806 3.194 11 H -0.216 1.216 12 H -0.223 1.223 13 H -0.189 1.189 14 N -0.304 5.304 15 C -0.055 4.055 16 C 0.344 3.656 17 O -0.463 6.463 18 C -0.067 4.067 19 C -0.145 4.145 20 C -0.019 4.019 21 C -0.075 4.075 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.120 4.120 27 C -0.152 4.152 28 C -0.063 4.063 29 N -0.172 5.172 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.200 0.800 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.129 0.871 42 H 0.156 0.844 43 H 0.169 0.831 44 H 0.176 0.824 45 H 0.172 0.828 46 H 0.201 0.799 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.311 -3.245 21.243 22.397 hybrid contribution 1.610 0.712 -0.488 1.827 sum -4.700 -2.533 20.755 21.431 Atomic orbital electron populations 1.21950 0.90949 1.03698 1.03183 1.21420 0.96396 0.96441 0.83643 0.91251 1.21220 0.84141 0.97934 0.95172 1.42534 1.01999 1.69898 1.24100 1.19674 0.89982 1.28374 0.99446 0.90170 1.25644 0.97548 1.03180 1.00672 1.69897 1.06800 1.53030 1.32505 0.85079 0.77850 0.78139 0.78313 1.21554 1.22335 1.18873 1.47691 1.47964 1.13843 1.20872 1.22307 1.02754 0.79404 1.01032 1.18375 0.78321 0.85818 0.83110 1.90704 1.60886 1.17501 1.77227 1.20800 0.97846 0.92323 0.95716 1.22114 0.96426 1.01409 0.94543 1.19335 0.94951 0.94644 0.92985 1.18778 0.97814 0.94736 0.96171 1.21472 0.98149 0.95038 0.99804 1.21378 0.97062 1.01111 0.95171 1.21671 0.99308 0.95075 0.96978 1.21525 0.96805 0.95436 1.00099 1.21551 0.96803 1.00765 0.92904 1.22825 0.96744 0.93858 1.01795 1.23634 0.93178 1.01217 0.88268 1.68040 1.25429 1.05398 1.18313 0.89623 0.90498 0.92066 0.94444 0.94663 0.79987 0.94323 0.90797 0.92004 0.88680 0.85411 0.87070 0.84398 0.83126 0.82430 0.82788 0.79919 0.77575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.19 71.98 0.66 -3.03 16 2 C 0.12 4.67 2.79 44.99 0.13 4.80 16 3 H 0.07 3.03 6.90 -2.39 -0.02 3.01 16 4 C 0.14 6.05 5.52 86.38 0.48 6.53 16 5 N -0.74 -41.01 5.43 -343.44 -1.87 -42.87 16 6 C -0.24 -14.26 9.99 84.04 0.84 -13.42 16 7 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 8 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 9 N -0.97 -63.64 13.06 21.65 0.28 -63.36 16 10 Si 0.98 48.07 29.55 68.60 2.03 50.10 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 14 N -0.57 -22.05 2.24 -825.64 -1.85 -23.90 16 15 C 0.09 2.76 8.32 127.77 1.06 3.82 16 16 C 0.56 23.96 7.36 86.88 0.64 24.60 16 17 O -0.58 -28.88 15.67 -3.77 -0.06 -28.94 16 18 C 0.07 2.55 6.62 41.85 0.28 2.83 16 19 C -0.12 -4.28 9.01 22.83 0.21 -4.08 16 20 C -0.01 -0.30 5.91 -19.86 -0.12 -0.42 16 21 C -0.07 -1.77 5.88 -20.04 -0.12 -1.89 16 22 C -0.13 -3.17 9.45 22.49 0.21 -2.96 16 23 C -0.13 -2.56 10.03 22.24 0.22 -2.33 16 24 C -0.11 -1.70 10.04 22.31 0.22 -1.48 16 25 C -0.12 -1.67 10.03 22.24 0.22 -1.45 16 26 C -0.10 -1.70 9.45 22.48 0.21 -1.49 16 27 C -0.13 -2.59 9.51 22.65 0.22 -2.37 16 28 C 0.10 2.01 11.17 84.75 0.95 2.96 16 29 N -0.46 -13.78 6.02 -185.19 -1.11 -14.90 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 1.77 7.67 -2.38 -0.02 1.75 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.50 6.87 -2.39 -0.02 1.48 16 34 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.37 22.68 7.06 -92.71 -0.65 22.02 16 36 H 0.25 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.93 6.54 -2.39 -0.02 1.92 16 39 H 0.10 3.26 5.26 -2.73 -0.01 3.25 16 40 H 0.13 4.76 5.94 -2.91 -0.02 4.75 16 41 H 0.11 3.08 6.30 -2.91 -0.02 3.06 16 42 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 44 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.15 1.57 6.29 -2.91 -0.02 1.55 16 46 H 0.18 1.84 6.33 -2.91 -0.02 1.82 16 47 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -82.75 385.19 4.54 -78.21 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: 0.35 Total: 39.34 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 6.78 Total: 6.33 kcal Atomic # 7 Polarization: -140.48 SS G_CDS: -4.55 Total: -145.03 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.06 Total: -28.94 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -82.75 4.54 -78.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482349798.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.359 kcal (2) G-P(sol) polarization free energy of solvation -82.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds