Wall clock time and date at job start Tue Mar 31 2020 22:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.52257 * 2 1 4 4 C 1.53042 * 109.49817 * 120.07359 * 2 1 3 5 5 C 1.53044 * 109.53252 * 58.58782 * 4 2 1 6 6 C 1.53182 * 109.31736 * 61.36718 * 5 4 2 7 7 N 1.46937 * 108.77329 * 305.36286 * 6 5 4 8 8 C 1.34776 * 120.63026 * 233.58064 * 7 6 5 9 9 O 1.21279 * 119.99587 * 174.90605 * 8 7 6 10 10 C 1.50697 * 119.99817 * 354.91174 * 8 7 6 11 11 N 1.46502 * 109.46768 * 185.64183 * 10 8 7 12 12 C 1.36376 * 125.96265 * 272.64062 * 11 10 8 13 13 O 1.35634 * 125.98600 * 0.03784 * 12 11 10 14 14 N 1.30902 * 108.02732 * 180.02562 * 12 11 10 15 15 N 1.40116 * 107.93731 * 0.02562 * 14 12 11 16 16 C 1.30907 * 107.93861 * 359.97438 * 15 14 12 17 17 O 1.35636 * 125.98507 * 180.02562 * 16 15 14 18 18 C 1.46924 * 118.73536 * 53.86125 * 7 6 5 19 19 H 1.08994 * 109.59268 * 65.92910 * 18 7 6 20 20 C 1.53000 * 109.58558 * 186.35374 * 18 7 6 21 21 N 1.46496 * 109.47461 * 180.87997 * 20 18 7 22 22 C 1.36930 * 120.00148 * 186.33367 * 21 20 18 23 23 H 1.08001 * 120.00184 * 4.87978 * 22 21 20 24 24 C 1.38817 * 119.99971 * 184.88414 * 22 21 20 25 25 N 1.31619 * 119.99882 * 182.71252 * 24 22 21 26 26 Si 1.86796 * 119.99941 * 2.70968 * 24 22 21 27 27 H 1.48504 * 109.46862 * 89.25774 * 26 24 22 28 28 H 1.48510 * 109.47031 * 209.25429 * 26 24 22 29 29 H 1.48491 * 109.47234 * 329.25415 * 26 24 22 30 30 H 1.09004 * 109.47019 * 299.92484 * 1 2 3 31 31 H 1.08996 * 109.46906 * 59.92269 * 1 2 3 32 32 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46381 * 298.57020 * 4 2 1 34 34 H 1.08993 * 109.46392 * 178.60609 * 4 2 1 35 35 H 1.08999 * 109.49863 * 301.40714 * 5 4 2 36 36 H 1.09005 * 109.52337 * 181.33367 * 5 4 2 37 37 H 1.08998 * 109.59349 * 185.57674 * 6 5 4 38 38 H 1.09001 * 109.70841 * 65.21345 * 6 5 4 39 39 H 1.09001 * 109.47909 * 65.64153 * 10 8 7 40 40 H 1.08997 * 109.47199 * 305.63449 * 10 8 7 41 41 H 0.96702 * 113.99737 * 269.97897 * 13 12 11 42 42 H 0.96699 * 113.99768 * 84.96038 * 17 16 15 43 43 H 1.08997 * 109.47066 * 300.88450 * 20 18 7 44 44 H 1.08998 * 109.47147 * 60.88068 * 20 18 7 45 45 H 0.97003 * 119.99898 * 6.33974 * 21 20 18 46 46 H 0.97004 * 120.00237 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7229 1.2484 5 6 1.5030 -2.1556 1.2661 6 6 2.0140 -2.9040 0.0311 7 7 1.6515 -2.1382 -1.1694 8 6 0.9748 -2.7222 -2.1781 9 8 0.6009 -2.0584 -3.1217 10 6 0.6829 -4.2000 -2.1334 11 7 0.0622 -4.6134 -3.3944 12 6 -1.2712 -4.5819 -3.6789 13 8 -2.2544 -4.1616 -2.8444 14 7 -1.4358 -5.0279 -4.8985 15 7 -0.1741 -5.3558 -5.4121 16 6 0.7167 -5.0979 -4.4882 17 8 2.0562 -5.2804 -4.5995 18 6 2.0463 -0.7254 -1.2519 19 1 3.1327 -0.6516 -1.2984 20 6 1.4324 -0.0936 -2.5029 21 7 1.8446 1.3093 -2.5939 22 6 1.3133 2.1174 -3.5633 23 1 0.5334 1.7438 -4.2101 24 6 1.7773 3.4170 -3.7145 25 7 1.2302 4.2110 -4.6104 26 14 3.1781 4.0388 -2.6467 27 1 4.4740 3.7464 -3.3105 28 1 3.0404 5.5049 -2.4538 29 1 3.1336 3.3597 -1.3269 30 1 -0.3633 0.5127 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6988 -0.1956 2.1390 34 1 3.1305 -0.7443 1.2354 35 1 0.4133 -2.1353 1.2543 36 1 1.8476 -2.6630 2.1673 37 1 1.5554 -3.8918 -0.0134 38 1 3.0978 -3.0064 0.0856 39 1 0.0035 -4.4114 -1.3076 40 1 1.6128 -4.7498 -1.9887 41 1 -2.6258 -4.8617 -2.2903 42 1 2.5206 -4.5411 -5.0152 43 1 1.7751 -0.6311 -3.3869 44 1 0.3456 -0.1497 -2.4422 45 1 2.4940 1.6656 -1.9676 46 1 1.5541 5.1192 -4.7159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482497276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:04 Heat of formation + Delta-G solvation = 24.689266 kcal Electronic energy + Delta-G solvation = -31608.996669 eV Core-core repulsion = 27345.450242 eV Total energy + Delta-G solvation = -4263.546428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.49439 -40.82291 -38.37132 -37.97504 -37.27350 -35.33299 -34.36511 -33.61934 -32.24372 -30.57586 -29.72839 -28.92868 -26.97216 -26.27802 -24.42579 -22.98364 -22.97471 -22.21660 -21.22423 -20.73198 -19.08199 -18.89648 -18.53043 -17.88938 -17.21811 -16.99503 -16.35309 -16.13397 -15.61642 -15.30619 -15.11793 -14.56505 -14.42628 -14.22814 -13.98607 -13.76575 -13.58106 -13.41177 -13.06934 -12.82215 -12.69374 -12.58848 -12.41734 -12.17753 -11.76242 -11.63576 -11.52952 -11.30258 -11.08039 -10.96055 -10.77838 -10.71755 -10.59731 -10.49723 -10.31983 -10.11371 -9.57266 -9.53806 -9.08485 -8.93521 -8.57957 -7.12518 -5.70041 -3.04979 1.23253 1.56375 2.07433 2.31813 2.67841 3.06183 3.34874 3.40141 3.45698 3.53646 4.00491 4.08772 4.38423 4.47394 4.60076 4.62405 4.70951 4.88340 4.98563 5.01464 5.06105 5.07935 5.23604 5.46873 5.47448 5.54080 5.60455 5.65721 5.70124 5.72321 5.77826 5.83482 5.86973 6.06940 6.13924 6.17378 6.48825 6.55543 6.82198 6.89199 7.05650 7.08924 7.21020 7.72426 7.92974 8.12382 8.49062 9.28402 9.99826 10.19720 11.48819 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.004076 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.644234 B = 6867.818850 C = 8225.815079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.086 0.914 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.106 3.894 7 N -0.598 5.598 8 C 0.488 3.512 9 O -0.491 6.491 10 C 0.083 3.917 11 N -0.496 5.496 12 C 0.421 3.579 13 O -0.429 6.429 14 N -0.295 5.295 15 N -0.295 5.295 16 C 0.414 3.586 17 O -0.441 6.441 18 C 0.141 3.859 19 H 0.072 0.928 20 C 0.166 3.834 21 N -0.759 5.759 22 C -0.232 4.232 23 H 0.089 0.911 24 C 0.002 3.998 25 N -0.936 5.936 26 Si 0.885 3.115 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.407 0.593 42 H 0.417 0.583 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.355 0.645 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -22.451 16.075 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.017 4.017 7 N -0.334 5.334 8 C 0.273 3.727 9 O -0.363 6.363 10 C -0.045 4.045 11 N -0.216 5.216 12 C 0.111 3.889 13 O -0.228 6.228 14 N -0.139 5.139 15 N -0.138 5.138 16 C 0.104 3.896 17 O -0.242 6.242 18 C 0.038 3.962 19 H 0.090 0.910 20 C 0.040 3.960 21 N -0.407 5.407 22 C -0.363 4.363 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.584 5.584 26 Si 0.716 3.284 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.265 0.735 42 H 0.277 0.723 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.188 0.812 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.779 -22.461 14.009 26.483 hybrid contribution 1.836 1.170 2.364 3.214 sum 2.615 -21.291 16.373 26.985 Atomic orbital electron populations 1.21823 0.94475 1.01111 1.02522 1.21549 0.97199 0.99946 0.93281 0.89544 1.21588 1.00376 0.95097 0.98361 1.21951 1.01933 0.96605 0.96951 1.21782 1.00719 0.94434 0.84750 1.48041 1.56066 1.11802 1.17477 1.20550 0.79578 0.89029 0.83570 1.90973 1.48969 1.62585 1.33818 1.21812 1.01748 0.95366 0.85561 1.46561 1.07675 1.52303 1.15044 1.21228 0.79109 0.97688 0.90890 1.85076 1.47029 1.36842 1.53870 1.78359 1.12607 1.18331 1.04613 1.78363 0.94217 1.22356 1.18896 1.21221 0.86490 0.97208 0.84680 1.84838 1.10795 1.45875 1.82695 1.21804 0.98620 0.78205 0.97539 0.91040 1.21311 0.98227 0.84099 0.92335 1.42919 1.52481 1.07282 1.38009 1.19031 1.15624 0.93053 1.08544 0.89311 1.24684 0.99454 0.96513 0.98686 1.69709 1.44285 1.07376 1.37048 0.86550 0.83612 0.77929 0.80273 1.21242 1.21855 1.20724 0.93316 0.90867 0.93340 0.91584 0.91923 0.90875 0.90822 0.90335 0.90862 0.86062 0.85638 0.73528 0.72324 0.93789 0.93149 0.81232 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.21 37.16 0.31 -1.68 16 2 C -0.10 -1.33 2.58 -90.27 -0.23 -1.57 16 3 H 0.09 1.35 7.30 -51.93 -0.38 0.97 16 4 C -0.12 -1.07 5.43 -26.69 -0.14 -1.21 16 5 C -0.14 -0.90 5.74 -26.61 -0.15 -1.05 16 6 C 0.11 0.66 6.29 -3.71 -0.02 0.64 16 7 N -0.60 -6.40 2.40 -164.97 -0.40 -6.80 16 8 C 0.49 5.91 7.67 -10.99 -0.08 5.83 16 9 O -0.49 -8.72 11.84 5.56 0.07 -8.65 16 10 C 0.08 0.64 4.86 -5.19 -0.03 0.61 16 11 N -0.50 -5.49 2.26 -121.35 -0.27 -5.76 16 12 C 0.42 5.33 9.15 -88.81 -0.81 4.52 16 13 O -0.43 -4.20 13.58 -18.60 -0.25 -4.46 16 14 N -0.30 -4.62 12.72 29.66 0.38 -4.24 16 15 N -0.29 -4.56 12.72 29.65 0.38 -4.18 16 16 C 0.41 5.14 9.15 -88.82 -0.81 4.33 16 17 O -0.44 -4.09 13.54 -18.61 -0.25 -4.34 16 18 C 0.14 2.04 2.75 -67.38 -0.18 1.85 16 19 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 20 C 0.17 3.38 3.66 -4.04 -0.01 3.36 16 21 N -0.76 -18.30 5.06 -59.91 -0.30 -18.60 16 22 C -0.23 -6.82 10.47 -15.06 -0.16 -6.98 16 23 H 0.09 2.88 8.06 -52.49 -0.42 2.46 16 24 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 25 N -0.94 -30.23 13.97 55.49 0.78 -29.45 16 26 Si 0.89 22.32 27.83 -169.99 -4.73 17.59 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.49 6.40 56.52 0.36 -6.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.31 6.36 -51.93 -0.33 0.98 16 32 H 0.05 0.61 5.97 -51.93 -0.31 0.30 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.53 6.33 -51.93 -0.33 0.20 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.25 6.01 -51.93 -0.31 -0.06 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.12 0.53 7.76 -51.93 -0.40 0.13 16 40 H 0.13 0.62 7.83 -51.93 -0.41 0.21 16 41 H 0.41 1.24 9.06 45.56 0.41 1.65 16 42 H 0.42 2.48 9.06 45.56 0.41 2.89 16 43 H 0.04 1.00 6.37 -51.93 -0.33 0.67 16 44 H 0.05 1.14 5.24 -51.93 -0.27 0.86 16 45 H 0.35 8.17 4.75 -40.82 -0.19 7.97 16 46 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 LS Contribution 365.25 15.07 5.50 5.50 Total: -1.00 -40.86 365.25 -6.12 -46.98 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.58 Total: 7.79 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -2.44 Total: 8.61 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: 0.56 Total: -69.04 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.44 Total: -17.45 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.73 Total: 17.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -40.86 -6.12 -46.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482497276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.674 kcal (2) G-P(sol) polarization free energy of solvation -40.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds