Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.52257 * 2 1 4 4 C 1.53042 * 109.49817 * 120.07359 * 2 1 3 5 5 C 1.53044 * 109.53252 * 58.58782 * 4 2 1 6 6 C 1.53182 * 109.31736 * 61.36718 * 5 4 2 7 7 N 1.46937 * 108.77329 * 305.36286 * 6 5 4 8 8 C 1.34776 * 120.63026 * 233.58064 * 7 6 5 9 9 O 1.21279 * 119.99587 * 174.90605 * 8 7 6 10 10 C 1.50697 * 119.99817 * 354.91174 * 8 7 6 11 11 N 1.46502 * 109.46768 * 185.64183 * 10 8 7 12 12 C 1.36376 * 125.96265 * 272.64062 * 11 10 8 13 13 O 1.35634 * 125.98600 * 0.03784 * 12 11 10 14 14 N 1.30902 * 108.02732 * 180.02562 * 12 11 10 15 15 N 1.40116 * 107.93731 * 0.02562 * 14 12 11 16 16 C 1.30907 * 107.93861 * 359.97438 * 15 14 12 17 17 O 1.35636 * 125.98507 * 180.02562 * 16 15 14 18 18 C 1.46924 * 118.73536 * 53.86125 * 7 6 5 19 19 H 1.08994 * 109.59268 * 65.92910 * 18 7 6 20 20 C 1.53000 * 109.58558 * 186.35374 * 18 7 6 21 21 N 1.46496 * 109.47461 * 180.87997 * 20 18 7 22 22 C 1.36930 * 120.00148 * 186.33367 * 21 20 18 23 23 H 1.08001 * 120.00184 * 4.87978 * 22 21 20 24 24 C 1.38817 * 119.99971 * 184.88414 * 22 21 20 25 25 N 1.31619 * 119.99882 * 182.71252 * 24 22 21 26 26 Si 1.86796 * 119.99941 * 2.70968 * 24 22 21 27 27 H 1.48504 * 109.46862 * 89.25774 * 26 24 22 28 28 H 1.48510 * 109.47031 * 209.25429 * 26 24 22 29 29 H 1.48491 * 109.47234 * 329.25415 * 26 24 22 30 30 H 1.09004 * 109.47019 * 299.92484 * 1 2 3 31 31 H 1.08996 * 109.46906 * 59.92269 * 1 2 3 32 32 H 1.08996 * 109.47077 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46381 * 298.57020 * 4 2 1 34 34 H 1.08993 * 109.46392 * 178.60609 * 4 2 1 35 35 H 1.08999 * 109.49863 * 301.40714 * 5 4 2 36 36 H 1.09005 * 109.52337 * 181.33367 * 5 4 2 37 37 H 1.08998 * 109.59349 * 185.57674 * 6 5 4 38 38 H 1.09001 * 109.70841 * 65.21345 * 6 5 4 39 39 H 1.09001 * 109.47909 * 65.64153 * 10 8 7 40 40 H 1.08997 * 109.47199 * 305.63449 * 10 8 7 41 41 H 0.96702 * 113.99737 * 269.97897 * 13 12 11 42 42 H 0.96699 * 113.99768 * 84.96038 * 17 16 15 43 43 H 1.08997 * 109.47066 * 300.88450 * 20 18 7 44 44 H 1.08998 * 109.47147 * 60.88068 * 20 18 7 45 45 H 0.97003 * 119.99898 * 6.33974 * 21 20 18 46 46 H 0.97004 * 120.00237 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7229 1.2484 5 6 1.5030 -2.1556 1.2661 6 6 2.0140 -2.9040 0.0311 7 7 1.6515 -2.1382 -1.1694 8 6 0.9748 -2.7222 -2.1781 9 8 0.6009 -2.0584 -3.1217 10 6 0.6829 -4.2000 -2.1334 11 7 0.0622 -4.6134 -3.3944 12 6 -1.2712 -4.5819 -3.6789 13 8 -2.2544 -4.1616 -2.8444 14 7 -1.4358 -5.0279 -4.8985 15 7 -0.1741 -5.3558 -5.4121 16 6 0.7167 -5.0979 -4.4882 17 8 2.0562 -5.2804 -4.5995 18 6 2.0463 -0.7254 -1.2519 19 1 3.1327 -0.6516 -1.2984 20 6 1.4324 -0.0936 -2.5029 21 7 1.8446 1.3093 -2.5939 22 6 1.3133 2.1174 -3.5633 23 1 0.5334 1.7438 -4.2101 24 6 1.7773 3.4170 -3.7145 25 7 1.2302 4.2110 -4.6104 26 14 3.1781 4.0388 -2.6467 27 1 4.4740 3.7464 -3.3105 28 1 3.0404 5.5049 -2.4538 29 1 3.1336 3.3597 -1.3269 30 1 -0.3633 0.5127 0.8907 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6988 -0.1956 2.1390 34 1 3.1305 -0.7443 1.2354 35 1 0.4133 -2.1353 1.2543 36 1 1.8476 -2.6630 2.1673 37 1 1.5554 -3.8918 -0.0134 38 1 3.0978 -3.0064 0.0856 39 1 0.0035 -4.4114 -1.3076 40 1 1.6128 -4.7498 -1.9887 41 1 -2.6258 -4.8617 -2.2903 42 1 2.5206 -4.5411 -5.0152 43 1 1.7751 -0.6311 -3.3869 44 1 0.3456 -0.1497 -2.4422 45 1 2.4940 1.6656 -1.9676 46 1 1.5541 5.1192 -4.7159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482497276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -14.631128 kcal Electronic energy + Delta-G solvation = -31610.701730 eV Core-core repulsion = 27345.450242 eV Total energy + Delta-G solvation = -4265.251488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.39549 -41.79399 -39.16173 -38.95940 -38.06399 -36.86750 -35.47344 -34.60771 -33.88344 -32.18394 -30.69760 -29.90525 -28.15138 -27.37958 -25.52837 -24.52110 -23.90218 -23.18232 -22.51216 -21.66109 -19.95933 -19.87099 -19.74083 -19.27763 -18.30583 -17.86897 -17.30735 -17.15488 -16.62513 -16.41895 -16.18077 -15.93672 -15.65216 -15.34879 -15.00003 -14.90759 -14.73528 -14.54847 -14.15609 -13.89876 -13.81906 -13.58219 -13.36824 -13.33927 -13.23169 -12.85128 -12.65837 -12.57898 -12.39435 -12.21186 -11.99464 -11.94821 -11.83148 -11.60442 -11.57425 -11.34557 -11.19977 -11.02158 -10.55114 -10.21402 -9.65407 -9.23439 -8.05672 -5.39873 0.35157 0.76495 1.13399 1.30648 1.38816 1.45284 1.45705 1.82531 2.20767 2.45076 2.82605 3.23867 3.25953 3.45331 3.67107 3.78720 3.84947 3.88425 3.99459 4.11946 4.14584 4.21837 4.24164 4.34178 4.49583 4.61644 4.67077 4.68765 4.76967 4.85610 4.92574 5.04014 5.14131 5.19450 5.22079 5.27494 5.33949 5.36698 5.54944 5.64161 5.72023 6.16615 6.18462 6.33520 6.44447 6.77677 7.01323 7.10872 7.79516 8.02738 9.17049 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.004076 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.644234 B = 6867.818850 C = 8225.815079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.097 3.903 7 N -0.591 5.591 8 C 0.482 3.518 9 O -0.562 6.562 10 C 0.088 3.912 11 N -0.492 5.492 12 C 0.430 3.570 13 O -0.435 6.435 14 N -0.345 5.345 15 N -0.341 5.341 16 C 0.422 3.578 17 O -0.432 6.432 18 C 0.151 3.849 19 H 0.081 0.919 20 C 0.177 3.823 21 N -0.756 5.756 22 C -0.232 4.232 23 H 0.034 0.966 24 C -0.067 4.067 25 N -0.988 5.988 26 Si 0.967 3.033 27 H -0.276 1.276 28 H -0.293 1.293 29 H -0.245 1.245 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.094 0.906 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.436 0.564 42 H 0.432 0.568 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.364 0.636 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -24.925 20.981 32.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.170 4.170 6 C -0.023 4.023 7 N -0.325 5.325 8 C 0.269 3.731 9 O -0.439 6.439 10 C -0.037 4.037 11 N -0.212 5.212 12 C 0.119 3.881 13 O -0.239 6.239 14 N -0.189 5.189 15 N -0.185 5.185 16 C 0.110 3.890 17 O -0.235 6.235 18 C 0.047 3.953 19 H 0.099 0.901 20 C 0.052 3.948 21 N -0.404 5.404 22 C -0.363 4.363 23 H 0.052 0.948 24 C -0.258 4.258 25 N -0.639 5.639 26 Si 0.793 3.207 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.170 1.170 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.299 0.701 42 H 0.294 0.706 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.198 0.802 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.373 -25.018 19.010 31.601 hybrid contribution 0.939 1.932 0.833 2.304 sum 4.312 -23.086 19.843 30.745 Atomic orbital electron populations 1.21733 0.95470 1.01541 1.00435 1.21525 0.96271 0.99115 0.95031 0.92248 1.21564 1.01132 0.96468 0.95666 1.21974 1.01593 0.94917 0.98550 1.22275 1.02587 0.95407 0.82048 1.48117 1.55162 1.10270 1.18929 1.21383 0.78303 0.90806 0.82595 1.90973 1.51905 1.64575 1.36493 1.22193 1.04583 0.91779 0.85162 1.46593 1.07014 1.51699 1.15850 1.21274 0.80213 0.96013 0.90639 1.85042 1.46491 1.38465 1.53896 1.78214 1.13372 1.20852 1.06469 1.78215 0.94911 1.24584 1.20761 1.21279 0.87228 0.95917 0.84545 1.84821 1.09166 1.46729 1.82814 1.21425 0.98469 0.80639 0.94804 0.90089 1.21145 0.96779 0.82012 0.94858 1.42819 1.52245 1.08506 1.36800 1.18858 1.14470 0.94082 1.08890 0.94757 1.25650 1.02946 0.96444 1.00764 1.69931 1.46493 1.07858 1.39617 0.85256 0.78948 0.77026 0.79499 1.20216 1.21931 1.16981 0.92011 0.96192 0.91671 0.90873 0.90644 0.91403 0.87291 0.86117 0.88744 0.81607 0.81540 0.70126 0.70633 0.96536 0.96123 0.80185 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.21 71.98 0.59 -3.11 16 2 C -0.10 -2.47 2.58 -10.57 -0.03 -2.50 16 3 H 0.06 1.78 7.30 -2.39 -0.02 1.76 16 4 C -0.11 -1.53 5.43 30.62 0.17 -1.36 16 5 C -0.13 -0.94 5.74 30.67 0.18 -0.76 16 6 C 0.10 0.59 6.29 86.36 0.54 1.14 16 7 N -0.59 -10.79 2.40 -794.23 -1.91 -12.70 16 8 C 0.48 10.76 7.67 87.66 0.67 11.43 16 9 O -0.56 -20.72 11.84 -3.02 -0.04 -20.75 16 10 C 0.09 0.98 4.86 85.63 0.42 1.40 16 11 N -0.49 -10.06 2.26 -759.26 -1.71 -11.77 16 12 C 0.43 10.70 9.15 179.72 1.64 12.34 16 13 O -0.44 -8.01 13.58 -89.47 -1.21 -9.23 16 14 N -0.34 -11.16 12.72 -173.65 -2.21 -13.37 16 15 N -0.34 -10.87 12.72 -173.65 -2.21 -13.08 16 16 C 0.42 10.19 9.15 179.72 1.64 11.83 16 17 O -0.43 -7.31 13.54 -89.49 -1.21 -8.52 16 18 C 0.15 4.16 2.75 45.12 0.12 4.28 16 19 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 20 C 0.18 7.57 3.66 86.38 0.32 7.89 16 21 N -0.76 -37.78 5.06 -343.47 -1.74 -39.52 16 22 C -0.23 -14.45 10.47 84.04 0.88 -13.57 16 23 H 0.03 2.45 8.06 -2.91 -0.02 2.43 16 24 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 25 N -0.99 -66.88 13.97 21.65 0.30 -66.58 16 26 Si 0.97 46.62 27.83 68.60 1.91 48.53 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 29 H -0.25 -10.30 6.40 99.48 0.64 -9.67 16 30 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.02 0.74 6.36 -2.39 -0.02 0.72 16 32 H 0.06 1.53 5.97 -2.39 -0.01 1.51 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.60 6.33 -2.39 -0.02 0.58 16 36 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.12 -0.20 6.01 -2.39 -0.01 -0.22 16 38 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.17 0.41 7.76 -2.39 -0.02 0.39 16 40 H 0.17 0.57 7.83 -2.39 -0.02 0.55 16 41 H 0.44 1.63 9.06 -74.06 -0.67 0.96 16 42 H 0.43 4.67 9.06 -74.06 -0.67 4.00 16 43 H 0.02 0.81 6.37 -2.39 -0.02 0.80 16 44 H 0.02 1.02 5.24 -2.39 -0.01 1.00 16 45 H 0.36 16.65 4.75 -92.71 -0.44 16.21 16 46 H 0.26 16.48 8.31 -92.71 -0.77 15.71 16 Total: -1.00 -101.56 365.25 -3.20 -104.75 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.78 Total: 16.94 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: 7.61 Total: 25.29 kcal Atomic # 7 Polarization: -147.54 SS G_CDS: -9.47 Total: -157.02 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -2.46 Total: -38.50 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.91 Total: 48.53 kcal Total: -101.56 -3.20 -104.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482497276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.124 kcal (2) G-P(sol) polarization free energy of solvation -101.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds