Wall clock time and date at job start Tue Mar 31 2020 23:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47348 * 2 1 4 4 C 1.52997 * 109.47323 * 239.99580 * 2 1 3 5 5 N 1.46901 * 109.47326 * 184.36047 * 4 2 1 6 6 C 1.46899 * 111.00281 * 163.97292 * 5 4 2 7 7 C 1.46905 * 111.00147 * 287.92504 * 5 4 2 8 8 C 1.50694 * 109.47257 * 169.99680 * 7 5 4 9 9 O 1.21296 * 120.00142 * 0.02562 * 8 7 5 10 10 N 1.34770 * 120.00304 * 179.97438 * 8 7 5 11 11 C 1.37098 * 120.00704 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99618 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00514 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99785 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00115 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47390 * 119.99704 * 15 13 11 18 18 H 1.48502 * 109.47001 * 239.99397 * 15 13 11 19 19 N 1.46505 * 109.46884 * 120.00054 * 2 1 3 20 20 C 1.34783 * 119.99807 * 274.80845 * 19 2 1 21 21 O 1.21732 * 119.99885 * 4.84252 * 20 19 2 22 22 C 1.46376 * 119.99851 * 184.83941 * 20 19 2 23 23 C 1.36723 * 126.82879 * 5.04169 * 22 20 19 24 24 N 1.33218 * 107.96235 * 179.97438 * 23 22 20 25 25 C 1.31535 * 109.76280 * 0.02562 * 24 23 22 26 26 O 1.35215 * 125.49204 * 180.02562 * 25 24 23 27 27 N 1.34939 * 109.01445 * 359.76365 * 25 24 23 28 28 C 1.46506 * 126.54412 * 180.26964 * 27 25 24 29 29 H 1.08999 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47119 * 299.99914 * 1 2 3 31 31 H 1.09000 * 109.47075 * 60.00116 * 1 2 3 32 32 H 1.09003 * 109.47509 * 304.36104 * 4 2 1 33 33 H 1.08998 * 109.46939 * 64.36381 * 4 2 1 34 34 H 1.09002 * 109.46818 * 54.89851 * 6 5 4 35 35 H 1.08999 * 109.47557 * 174.90124 * 6 5 4 36 36 H 1.09001 * 109.47361 * 294.90302 * 6 5 4 37 37 H 1.08997 * 109.46822 * 290.00118 * 7 5 4 38 38 H 1.09002 * 109.46477 * 49.99954 * 7 5 4 39 39 H 0.97003 * 119.99589 * 0.02562 * 10 8 7 40 40 H 0.96996 * 119.99482 * 180.02562 * 14 13 11 41 41 H 0.97000 * 120.00219 * 94.81069 * 19 2 1 42 42 H 1.08000 * 126.01536 * 359.94603 * 23 22 20 43 43 H 0.96696 * 113.99506 * 90.02433 * 26 25 24 44 44 H 1.08998 * 109.46761 * 271.87603 * 28 27 25 45 45 H 1.08996 * 109.47311 * 31.87160 * 28 27 25 46 46 H 1.08999 * 109.47109 * 151.88237 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5052 -0.8132 -1.1976 6 6 4.0044 -1.8078 -2.1565 7 6 4.1235 0.4989 -1.4304 8 6 5.5981 0.4198 -1.1299 9 8 6.0861 -0.6267 -0.7588 10 7 6.3748 1.5117 -1.2745 11 6 7.7164 1.4397 -1.0016 12 1 8.1510 0.5078 -0.6712 13 6 8.5171 2.5655 -1.1501 14 7 7.9884 3.6993 -1.5527 15 14 10.3452 2.4671 -0.7790 16 1 10.6890 1.0886 -0.3466 17 1 11.1174 2.8104 -2.0000 18 1 10.6824 3.4241 0.3053 19 7 2.0182 -0.6907 1.1962 20 6 2.1506 -0.0173 2.3563 21 8 1.7820 1.1403 2.4336 22 6 2.7374 -0.6781 3.5232 23 6 3.2821 -1.9313 3.5676 24 7 3.7030 -2.1525 4.8121 25 6 3.4514 -1.1003 5.5603 26 8 3.7468 -0.9827 6.8745 27 7 2.8560 -0.1549 4.8035 28 6 2.4169 1.1701 5.2485 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6143 -1.7240 -1.2891 33 1 1.7419 -0.1644 -2.1374 34 1 3.6317 -1.5708 -3.1530 35 1 5.0943 -1.7915 -2.1628 36 1 3.6576 -2.7993 -1.8653 37 1 3.9798 0.7887 -2.4713 38 1 3.6593 1.2398 -0.7795 39 1 5.9846 2.3486 -1.5716 40 1 8.5475 4.4851 -1.6567 41 1 2.2463 -1.6325 1.1534 42 1 3.3574 -2.6208 2.7397 43 1 4.6225 -0.6116 7.0489 44 1 1.3985 1.1055 5.6316 45 1 3.0797 1.5266 6.0369 46 1 2.4457 1.8636 4.4082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483372960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:29 Heat of formation + Delta-G solvation = -32.026954 kcal Electronic energy + Delta-G solvation = -30261.812363 eV Core-core repulsion = 25995.806535 eV Total energy + Delta-G solvation = -4266.005827 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31267 -39.66397 -38.56907 -37.51498 -36.88140 -34.90209 -34.10366 -33.74420 -31.58876 -31.23586 -28.91434 -28.05811 -27.19993 -26.97540 -24.71128 -23.71977 -22.39435 -21.77312 -20.75600 -20.28242 -19.11328 -18.78051 -17.84443 -17.60247 -16.66580 -16.32648 -16.14426 -15.67662 -15.32173 -14.81432 -14.74774 -14.63184 -14.31240 -14.19305 -13.96596 -13.69406 -13.57907 -13.45646 -12.93437 -12.87106 -12.85394 -12.44130 -12.33953 -12.17179 -12.06077 -11.85111 -11.49663 -11.47325 -11.21720 -11.04955 -10.66098 -10.37876 -10.34373 -10.22160 -9.92052 -9.85009 -9.47858 -9.09237 -8.53445 -8.44718 -7.98641 -7.89627 -6.41310 -3.81917 1.12143 2.06040 2.56234 3.15898 3.20303 3.26502 3.33678 3.37630 3.66842 3.90349 3.96395 4.22594 4.56669 4.63372 4.70020 4.94560 5.03528 5.04319 5.11355 5.18803 5.24716 5.27356 5.39014 5.41390 5.52562 5.58075 5.66518 5.71113 5.83407 5.91487 5.96317 5.99624 6.08049 6.27244 6.28109 6.34122 6.46526 6.52675 7.20934 7.31266 7.32660 7.51129 7.55743 7.70022 8.07032 8.20813 8.62225 9.18822 9.55316 10.06919 10.76582 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.003697 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.070609 B = 7572.118913 C = 9538.153476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.089 0.911 4 C 0.042 3.958 5 N -0.515 5.515 6 C 0.024 3.976 7 C 0.043 3.957 8 C 0.445 3.555 9 O -0.576 6.576 10 N -0.565 5.565 11 C -0.297 4.297 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 N -0.690 5.690 20 C 0.601 3.399 21 O -0.552 6.552 22 C -0.074 4.074 23 C 0.062 3.938 24 N -0.487 5.487 25 C 0.392 3.608 26 O -0.442 6.442 27 N -0.428 5.428 28 C 0.067 3.933 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.014 0.986 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.391 0.609 40 H 0.270 0.730 41 H 0.406 0.594 42 H 0.187 0.813 43 H 0.404 0.596 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.446 -5.980 6.594 17.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.087 4.087 5 N -0.239 5.239 6 C -0.124 4.124 7 C -0.088 4.088 8 C 0.231 3.769 9 O -0.460 6.460 10 N -0.202 5.202 11 C -0.426 4.426 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.755 3.245 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 N -0.340 5.340 20 C 0.387 3.613 21 O -0.431 6.431 22 C -0.190 4.190 23 C -0.093 4.093 24 N -0.215 5.215 25 C 0.093 3.907 26 O -0.243 6.243 27 N -0.121 5.121 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.224 0.776 40 H 0.080 0.920 41 H 0.241 0.759 42 H 0.204 0.796 43 H 0.262 0.738 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.330 -6.587 7.875 18.451 hybrid contribution 0.747 1.510 -0.990 1.954 sum -14.583 -5.077 6.886 16.907 Atomic orbital electron populations 1.22153 0.94926 1.02220 1.02747 1.21004 0.93351 0.97695 0.83456 0.89274 1.22501 0.89235 1.00996 0.95943 1.61563 1.03279 1.07105 1.51967 1.22518 1.03867 0.94528 0.91475 1.21916 0.95628 0.91448 0.99846 1.19698 0.87205 0.85224 0.84817 1.90489 1.74713 1.29565 1.51242 1.41877 1.08468 1.10664 1.59162 1.19732 0.82893 0.98021 1.41992 0.87894 1.25250 1.00562 0.94817 0.97331 1.69625 1.36770 1.00900 1.47042 0.85825 0.82175 0.78549 0.77952 1.19211 1.20763 1.20800 1.45348 1.66258 1.14100 1.08250 1.16525 0.77659 0.85317 0.81786 1.90779 1.51086 1.16949 1.84320 1.20577 1.14766 0.97657 0.86016 1.22579 0.98162 0.94019 0.94527 1.70300 1.23643 1.24271 1.03332 1.20240 1.00065 0.85706 0.84724 1.84794 1.40462 1.84877 1.14135 1.45606 1.44391 1.14168 1.07944 1.22273 1.00981 0.81321 1.02935 0.92323 0.91748 0.91541 0.90055 0.93171 0.96795 0.88637 0.92025 0.93463 0.89588 0.77576 0.91966 0.75877 0.79593 0.73802 0.90260 0.89721 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.49 37.16 0.35 -1.11 16 2 C 0.15 1.68 2.49 -67.93 -0.17 1.51 16 3 H 0.09 1.21 6.27 -51.93 -0.33 0.88 16 4 C 0.04 0.45 4.52 -3.82 -0.02 0.43 16 5 N -0.52 -7.60 4.19 -244.37 -1.02 -8.62 16 6 C 0.02 0.35 9.19 60.06 0.55 0.90 16 7 C 0.04 0.74 5.30 -4.98 -0.03 0.72 16 8 C 0.45 10.30 7.42 -10.99 -0.08 10.22 16 9 O -0.58 -15.00 13.96 5.54 0.08 -14.92 16 10 N -0.57 -14.29 5.29 -10.97 -0.06 -14.34 16 11 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 15 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.69 -8.25 4.79 -55.21 -0.26 -8.51 16 20 C 0.60 8.63 7.73 -12.98 -0.10 8.53 16 21 O -0.55 -9.13 14.54 5.16 0.08 -9.06 16 22 C -0.07 -1.04 6.92 -81.98 -0.57 -1.61 16 23 C 0.06 0.84 11.35 -17.50 -0.20 0.64 16 24 N -0.49 -7.25 11.22 -14.62 -0.16 -7.41 16 25 C 0.39 5.20 9.01 -89.60 -0.81 4.39 16 26 O -0.44 -4.51 13.53 -17.34 -0.23 -4.74 16 27 N -0.43 -5.60 3.20 -122.12 -0.39 -5.99 16 28 C 0.07 0.69 10.73 59.85 0.64 1.33 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.71 8.00 -51.93 -0.42 0.30 16 33 H 0.05 0.49 8.05 -51.93 -0.42 0.08 16 34 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 35 H 0.10 1.76 5.79 -51.93 -0.30 1.46 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.09 1.44 6.48 -51.93 -0.34 1.11 16 39 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.41 4.21 7.57 -40.82 -0.31 3.91 16 42 H 0.19 2.02 7.48 -52.49 -0.39 1.63 16 43 H 0.40 2.15 9.06 45.56 0.41 2.56 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.11 1.32 6.33 -51.93 -0.33 1.00 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -35.57 387.45 -6.73 -42.30 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -5.63 Total: 15.24 kcal Atomic # 6 Polarization: 18.71 SS G_CDS: -0.66 Total: 18.04 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.18 Total: -68.79 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.08 Total: -28.72 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.57 -6.73 -42.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483372960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.271 kcal (2) G-P(sol) polarization free energy of solvation -35.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds