Wall clock time and date at job start Tue Mar 31 2020 23:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47348 * 2 1 4 4 C 1.52997 * 109.47323 * 239.99580 * 2 1 3 5 5 N 1.46901 * 109.47326 * 184.36047 * 4 2 1 6 6 C 1.46899 * 111.00281 * 163.97292 * 5 4 2 7 7 C 1.46905 * 111.00147 * 287.92504 * 5 4 2 8 8 C 1.50694 * 109.47257 * 169.99680 * 7 5 4 9 9 O 1.21296 * 120.00142 * 0.02562 * 8 7 5 10 10 N 1.34770 * 120.00304 * 179.97438 * 8 7 5 11 11 C 1.37098 * 120.00704 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99618 * 0.02562 * 11 10 8 13 13 C 1.38945 * 120.00514 * 180.02562 * 11 10 8 14 14 N 1.31418 * 119.99785 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00115 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47390 * 119.99704 * 15 13 11 18 18 H 1.48502 * 109.47001 * 239.99397 * 15 13 11 19 19 N 1.46505 * 109.46884 * 120.00054 * 2 1 3 20 20 C 1.34783 * 119.99807 * 274.80845 * 19 2 1 21 21 O 1.21732 * 119.99885 * 4.84252 * 20 19 2 22 22 C 1.46376 * 119.99851 * 184.83941 * 20 19 2 23 23 C 1.36723 * 126.82879 * 5.04169 * 22 20 19 24 24 N 1.33218 * 107.96235 * 179.97438 * 23 22 20 25 25 C 1.31535 * 109.76280 * 0.02562 * 24 23 22 26 26 O 1.35215 * 125.49204 * 180.02562 * 25 24 23 27 27 N 1.34939 * 109.01445 * 359.76365 * 25 24 23 28 28 C 1.46506 * 126.54412 * 180.26964 * 27 25 24 29 29 H 1.08999 * 109.47348 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47119 * 299.99914 * 1 2 3 31 31 H 1.09000 * 109.47075 * 60.00116 * 1 2 3 32 32 H 1.09003 * 109.47509 * 304.36104 * 4 2 1 33 33 H 1.08998 * 109.46939 * 64.36381 * 4 2 1 34 34 H 1.09002 * 109.46818 * 54.89851 * 6 5 4 35 35 H 1.08999 * 109.47557 * 174.90124 * 6 5 4 36 36 H 1.09001 * 109.47361 * 294.90302 * 6 5 4 37 37 H 1.08997 * 109.46822 * 290.00118 * 7 5 4 38 38 H 1.09002 * 109.46477 * 49.99954 * 7 5 4 39 39 H 0.97003 * 119.99589 * 0.02562 * 10 8 7 40 40 H 0.96996 * 119.99482 * 180.02562 * 14 13 11 41 41 H 0.97000 * 120.00219 * 94.81069 * 19 2 1 42 42 H 1.08000 * 126.01536 * 359.94603 * 23 22 20 43 43 H 0.96696 * 113.99506 * 90.02433 * 26 25 24 44 44 H 1.08998 * 109.46761 * 271.87603 * 28 27 25 45 45 H 1.08996 * 109.47311 * 31.87160 * 28 27 25 46 46 H 1.08999 * 109.47109 * 151.88237 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5052 -0.8132 -1.1976 6 6 4.0044 -1.8078 -2.1565 7 6 4.1235 0.4989 -1.4304 8 6 5.5981 0.4198 -1.1299 9 8 6.0861 -0.6267 -0.7588 10 7 6.3748 1.5117 -1.2745 11 6 7.7164 1.4397 -1.0016 12 1 8.1510 0.5078 -0.6712 13 6 8.5171 2.5655 -1.1501 14 7 7.9884 3.6993 -1.5527 15 14 10.3452 2.4671 -0.7790 16 1 10.6890 1.0886 -0.3466 17 1 11.1174 2.8104 -2.0000 18 1 10.6824 3.4241 0.3053 19 7 2.0182 -0.6907 1.1962 20 6 2.1506 -0.0173 2.3563 21 8 1.7820 1.1403 2.4336 22 6 2.7374 -0.6781 3.5232 23 6 3.2821 -1.9313 3.5676 24 7 3.7030 -2.1525 4.8121 25 6 3.4514 -1.1003 5.5603 26 8 3.7468 -0.9827 6.8745 27 7 2.8560 -0.1549 4.8035 28 6 2.4169 1.1701 5.2485 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6143 -1.7240 -1.2891 33 1 1.7419 -0.1644 -2.1374 34 1 3.6317 -1.5708 -3.1530 35 1 5.0943 -1.7915 -2.1628 36 1 3.6576 -2.7993 -1.8653 37 1 3.9798 0.7887 -2.4713 38 1 3.6593 1.2398 -0.7795 39 1 5.9846 2.3486 -1.5716 40 1 8.5475 4.4851 -1.6567 41 1 2.2463 -1.6325 1.1534 42 1 3.3574 -2.6208 2.7397 43 1 4.6225 -0.6116 7.0489 44 1 1.3985 1.1055 5.6316 45 1 3.0797 1.5266 6.0369 46 1 2.4457 1.8636 4.4082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483372960.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:28 Heat of formation + Delta-G solvation = -63.941242 kcal Electronic energy + Delta-G solvation = -30263.196270 eV Core-core repulsion = 25995.806535 eV Total energy + Delta-G solvation = -4267.389735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.30876 -40.77926 -40.16824 -38.43360 -38.13672 -36.17797 -35.63682 -35.01953 -33.26004 -32.56614 -29.90601 -29.53543 -28.09448 -27.91972 -26.59010 -24.74993 -23.55409 -22.76848 -21.80385 -21.32863 -20.81366 -19.83377 -19.69680 -18.58572 -17.89834 -17.53299 -17.34072 -16.70663 -16.61419 -16.54506 -15.99358 -15.80412 -15.56385 -15.41195 -15.13285 -15.11927 -14.92887 -14.61126 -14.10400 -13.78251 -13.71937 -13.68660 -13.41748 -13.33285 -13.19895 -13.07205 -12.87234 -12.79621 -12.63186 -12.43253 -12.33844 -12.12833 -11.66742 -11.43103 -11.41595 -10.97627 -10.88373 -10.23765 -10.09792 -9.98063 -9.53491 -9.15839 -8.46101 -5.94264 0.11468 1.12326 1.35287 1.40122 1.54274 1.55852 2.07843 2.19508 2.28279 2.36396 2.79252 2.83292 3.21138 3.39960 3.63465 3.78590 3.85223 3.96462 4.16854 4.21731 4.25212 4.32213 4.37279 4.44033 4.55300 4.58344 4.62345 4.71400 4.77312 4.82657 4.88678 4.93301 5.10423 5.28128 5.32064 5.35339 5.41540 5.53072 5.54721 5.90259 6.09598 6.25746 6.47682 6.56617 6.61548 6.69755 7.14437 7.18972 7.58392 8.14194 8.71833 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008379 B = 0.003697 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.070609 B = 7572.118913 C = 9538.153476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.063 0.937 4 C 0.048 3.952 5 N -0.529 5.529 6 C 0.029 3.971 7 C 0.058 3.942 8 C 0.443 3.557 9 O -0.607 6.607 10 N -0.579 5.579 11 C -0.328 4.328 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.923 5.923 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.273 1.273 19 N -0.680 5.680 20 C 0.596 3.404 21 O -0.581 6.581 22 C -0.096 4.096 23 C 0.061 3.939 24 N -0.518 5.518 25 C 0.396 3.604 26 O -0.440 6.440 27 N -0.432 5.432 28 C 0.065 3.935 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.393 0.607 40 H 0.276 0.724 41 H 0.414 0.586 42 H 0.206 0.794 43 H 0.426 0.574 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.480 -6.487 6.334 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.081 0.919 4 C -0.079 4.079 5 N -0.254 5.254 6 C -0.119 4.119 7 C -0.074 4.074 8 C 0.231 3.769 9 O -0.493 6.493 10 N -0.217 5.217 11 C -0.457 4.457 12 H 0.097 0.903 13 C -0.214 4.214 14 N -0.564 5.564 15 Si 0.814 3.186 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.198 1.198 19 N -0.330 5.330 20 C 0.383 3.617 21 O -0.464 6.464 22 C -0.212 4.212 23 C -0.094 4.094 24 N -0.248 5.248 25 C 0.096 3.904 26 O -0.244 6.244 27 N -0.125 5.125 28 C -0.076 4.076 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.251 0.749 42 H 0.223 0.777 43 H 0.288 0.712 44 H 0.110 0.890 45 H 0.130 0.870 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.380 -7.095 7.600 19.401 hybrid contribution 1.027 1.614 -0.860 2.098 sum -15.352 -5.481 6.740 17.640 Atomic orbital electron populations 1.22062 0.92849 1.03449 1.02671 1.21092 0.94880 0.96324 0.83359 0.91927 1.22591 0.86241 1.03032 0.96079 1.61503 1.05745 1.05591 1.52519 1.22407 1.01066 0.95772 0.92633 1.21716 0.91276 0.93409 1.00980 1.20764 0.89486 0.83956 0.82711 1.90467 1.76135 1.30615 1.52058 1.41973 1.08086 1.11434 1.60179 1.19668 0.84545 0.97682 1.43837 0.90317 1.26009 1.04483 0.94194 0.96684 1.69689 1.38244 1.01320 1.47195 0.84909 0.77172 0.78246 0.78262 1.19732 1.19504 1.19847 1.45368 1.65384 1.14415 1.07842 1.16681 0.77539 0.85069 0.82459 1.90758 1.52591 1.18136 1.84870 1.20704 1.15775 0.98126 0.86555 1.22942 0.97432 0.94197 0.94797 1.70293 1.25001 1.25402 1.04068 1.20373 0.99237 0.85424 0.85386 1.84759 1.42230 1.85087 1.12351 1.45787 1.44179 1.14854 1.07715 1.22403 1.02448 0.79887 1.02847 0.90387 0.93665 0.89786 0.87019 0.91236 0.94874 0.93153 0.89540 0.91493 0.89039 0.77363 0.91441 0.74902 0.77727 0.71244 0.89038 0.87047 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.49 71.98 0.68 -1.69 16 2 C 0.15 3.06 2.49 44.99 0.11 3.17 16 3 H 0.06 1.66 6.27 -2.39 -0.01 1.64 16 4 C 0.05 0.87 4.52 86.30 0.39 1.26 16 5 N -0.53 -14.62 4.19 -927.05 -3.89 -18.50 16 6 C 0.03 0.78 9.19 127.69 1.17 1.96 16 7 C 0.06 1.94 5.30 85.55 0.45 2.39 16 8 C 0.44 20.89 7.42 87.66 0.65 21.54 16 9 O -0.61 -32.51 13.96 -3.08 -0.04 -32.55 16 10 N -0.58 -30.06 5.29 -307.00 -1.62 -31.68 16 11 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 14 N -0.92 -50.59 13.05 21.66 0.28 -50.30 16 15 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 N -0.68 -15.59 4.79 -446.77 -2.14 -17.73 16 20 C 0.60 17.19 7.73 86.36 0.67 17.86 16 21 O -0.58 -19.68 14.54 -4.45 -0.06 -19.74 16 22 C -0.10 -2.70 6.92 39.80 0.28 -2.42 16 23 C 0.06 1.64 11.35 84.13 0.95 2.59 16 24 N -0.52 -15.24 11.22 -313.65 -3.52 -18.76 16 25 C 0.40 10.24 9.01 179.99 1.62 11.86 16 26 O -0.44 -8.36 13.53 -84.96 -1.15 -9.51 16 27 N -0.43 -11.19 3.20 -651.99 -2.09 -13.28 16 28 C 0.07 1.31 10.73 127.77 1.37 2.68 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.42 8.00 -2.39 -0.02 1.40 16 33 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 34 H 0.03 0.76 8.13 -2.39 -0.02 0.74 16 35 H 0.05 1.85 5.79 -2.39 -0.01 1.84 16 36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 38 H 0.09 3.03 6.48 -2.39 -0.02 3.01 16 39 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 40 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 41 H 0.41 7.95 7.57 -92.71 -0.70 7.25 16 42 H 0.21 4.32 7.48 -2.91 -0.02 4.30 16 43 H 0.43 3.82 9.06 -74.06 -0.67 3.15 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.09 2.24 6.33 -2.39 -0.02 2.22 16 Total: -1.00 -79.28 387.45 -3.62 -82.90 By element: Atomic # 1 Polarization: 41.78 SS G_CDS: -1.05 Total: 40.73 kcal Atomic # 6 Polarization: 33.32 SS G_CDS: 9.63 Total: 42.95 kcal Atomic # 7 Polarization: -137.28 SS G_CDS: -12.98 Total: -150.25 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -1.26 Total: -61.81 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -79.28 -3.62 -82.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483372960.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.958 kcal (2) G-P(sol) polarization free energy of solvation -79.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds