Wall clock time and date at job start Tue Mar 31 2020 23:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47629 * 2 1 4 4 C 1.52998 * 109.47154 * 120.00234 * 2 1 3 5 5 N 1.46896 * 109.47502 * 296.74710 * 4 2 1 6 6 C 1.46901 * 111.00067 * 297.01881 * 5 4 2 7 7 C 1.46898 * 111.00442 * 173.06147 * 5 4 2 8 8 C 1.50699 * 109.47486 * 190.00251 * 7 5 4 9 9 O 1.21297 * 119.99673 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00044 * 180.02562 * 8 7 5 11 11 C 1.37101 * 119.99823 * 179.97438 * 10 8 7 12 12 H 1.07993 * 120.00053 * 359.97438 * 11 10 8 13 13 C 1.38954 * 120.00234 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99649 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00307 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47461 * 89.99831 * 15 13 11 17 17 H 1.48495 * 109.47054 * 209.99886 * 15 13 11 18 18 H 1.48501 * 109.46990 * 329.99595 * 15 13 11 19 19 N 1.46501 * 109.47029 * 240.00177 * 2 1 3 20 20 C 1.34778 * 119.99800 * 81.01361 * 19 2 1 21 21 O 1.21734 * 120.00139 * 5.08199 * 20 19 2 22 22 C 1.46381 * 120.00067 * 185.08403 * 20 19 2 23 23 C 1.36715 * 126.82578 * 173.91238 * 22 20 19 24 24 N 1.33230 * 107.96147 * 179.87071 * 23 22 20 25 25 C 1.31534 * 109.76026 * 0.39741 * 24 23 22 26 26 O 1.35204 * 125.49404 * 179.77002 * 25 24 23 27 27 N 1.34948 * 109.01414 * 359.75203 * 25 24 23 28 28 C 1.46501 * 126.54184 * 179.97438 * 27 25 24 29 29 H 1.08995 * 109.47078 * 299.99801 * 1 2 3 30 30 H 1.09001 * 109.47064 * 59.99331 * 1 2 3 31 31 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47227 * 56.75002 * 4 2 1 33 33 H 1.09003 * 109.47468 * 176.74384 * 4 2 1 34 34 H 1.09000 * 109.47072 * 65.51888 * 6 5 4 35 35 H 1.08992 * 109.47310 * 185.52412 * 6 5 4 36 36 H 1.08999 * 109.46910 * 305.52431 * 6 5 4 37 37 H 1.09001 * 109.47117 * 310.00308 * 7 5 4 38 38 H 1.09000 * 109.47112 * 69.99635 * 7 5 4 39 39 H 0.97000 * 120.00647 * 359.97438 * 10 8 7 40 40 H 0.96999 * 120.00279 * 180.02562 * 14 13 11 41 41 H 0.96992 * 120.00171 * 261.00975 * 19 2 1 42 42 H 1.08002 * 126.01911 * 359.97438 * 23 22 20 43 43 H 0.96706 * 114.00300 * 269.98146 * 26 25 24 44 44 H 1.08997 * 109.46869 * 262.94269 * 28 27 25 45 45 H 1.09002 * 109.47313 * 22.94094 * 28 27 25 46 46 H 1.09000 * 109.47180 * 142.94006 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6156 0.0150 2.4474 6 6 2.2082 1.3588 2.4770 7 6 1.9444 -0.7324 3.6686 8 6 1.2838 -0.0752 4.8530 9 8 0.6060 0.9183 4.6953 10 7 1.4468 -0.5909 6.0874 11 6 0.8462 0.0073 7.1649 12 1 0.2428 0.8919 7.0246 13 6 1.0138 -0.5246 8.4377 14 7 1.7476 -1.6013 8.6084 15 14 0.1949 0.2900 9.9057 16 1 -1.1542 -0.2965 10.1085 17 1 1.0198 0.0658 11.1200 18 1 0.0683 1.7483 9.6557 19 7 2.0183 -0.6906 -1.1962 20 6 2.0710 -0.0401 -2.3755 21 8 1.8013 1.1457 -2.4291 22 6 2.4525 -0.7597 -3.5918 23 6 2.4400 -0.2734 -4.8695 24 7 2.8603 -1.2422 -5.6819 25 6 3.1308 -2.3229 -4.9825 26 8 3.5757 -3.4948 -5.4891 27 7 2.8931 -2.0732 -3.6778 28 6 3.0665 -3.0098 -2.5647 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6298 -1.7308 1.2788 33 1 3.1284 -0.7721 1.2205 34 1 1.8150 1.9476 1.6482 35 1 1.9578 1.8456 3.4194 36 1 3.2914 1.2803 2.3851 37 1 1.5856 -1.7574 3.5749 38 1 3.0249 -0.7373 3.8117 39 1 1.9890 -1.3852 6.2136 40 1 1.8644 -1.9729 9.4967 41 1 2.3037 -1.6158 -1.1395 42 1 2.1436 0.7214 -5.1676 43 1 2.8710 -4.1094 -5.7361 44 1 2.1077 -3.4683 -2.3230 45 1 3.7783 -3.7847 -2.8494 46 1 3.4427 -2.4733 -1.6937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483372961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:32 Heat of formation + Delta-G solvation = -21.356882 kcal Electronic energy + Delta-G solvation = -29112.565790 eV Core-core repulsion = 24847.022652 eV Total energy + Delta-G solvation = -4265.543138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.75944 -39.95583 -38.71797 -37.88761 -37.10198 -35.46440 -34.48504 -33.82198 -31.36142 -31.16686 -29.48267 -27.94193 -27.78977 -27.09926 -24.99135 -24.12608 -22.56787 -22.11690 -20.92795 -20.45200 -19.21868 -19.12921 -17.97882 -17.89642 -17.10866 -16.64255 -16.16884 -15.92889 -15.51195 -15.24703 -15.06428 -14.73240 -14.67213 -14.43313 -14.23507 -14.00687 -13.63165 -13.57162 -13.34180 -13.14489 -13.04016 -12.65603 -12.47612 -12.18401 -11.91283 -11.56179 -11.49426 -11.42688 -11.33692 -10.98035 -10.82848 -10.74209 -10.42051 -10.35873 -10.32784 -10.24928 -9.51236 -9.47285 -8.93029 -8.51031 -8.03024 -7.94438 -6.45394 -3.86128 0.70719 1.68432 2.17495 2.67921 2.95839 3.15352 3.23812 3.24407 3.30132 3.85770 3.92105 3.96117 4.09021 4.22680 4.36053 4.51476 4.66037 4.77960 4.88621 4.99640 5.04886 5.17793 5.22107 5.29449 5.48712 5.52708 5.62555 5.67028 5.76465 5.86755 5.87741 5.92549 5.94183 5.98221 6.19235 6.23888 6.41353 6.51516 6.90539 7.04932 7.15440 7.25243 7.32947 7.52053 7.80150 8.02656 8.57718 9.14646 9.50362 10.01953 10.72298 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001833 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.506125 B =15274.431259 C =15950.055735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.142 3.858 3 H 0.094 0.906 4 C 0.048 3.952 5 N -0.510 5.510 6 C 0.017 3.983 7 C 0.046 3.954 8 C 0.443 3.557 9 O -0.575 6.575 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 N -0.730 5.730 20 C 0.598 3.402 21 O -0.518 6.518 22 C -0.083 4.083 23 C 0.086 3.914 24 N -0.489 5.489 25 C 0.402 3.598 26 O -0.440 6.440 27 N -0.449 5.449 28 C 0.053 3.947 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.015 0.985 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.392 0.608 42 H 0.192 0.808 43 H 0.406 0.594 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.133 -8.008 -23.383 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.082 4.082 5 N -0.234 5.234 6 C -0.130 4.130 7 C -0.085 4.085 8 C 0.229 3.771 9 O -0.459 6.459 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 N -0.386 5.386 20 C 0.384 3.616 21 O -0.393 6.393 22 C -0.197 4.197 23 C -0.068 4.068 24 N -0.217 5.217 25 C 0.103 3.897 26 O -0.242 6.242 27 N -0.146 5.146 28 C -0.090 4.090 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.034 0.966 37 H 0.106 0.894 38 H 0.066 0.934 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.230 0.770 42 H 0.209 0.791 43 H 0.264 0.736 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.694 -6.455 -23.985 25.112 hybrid contribution 0.614 -1.435 1.751 2.346 sum 4.308 -7.890 -22.234 23.983 Atomic orbital electron populations 1.22055 0.93731 1.02085 1.03265 1.21040 0.95559 0.97489 0.82072 0.88777 1.22324 0.97640 0.97952 0.90236 1.61488 1.59248 1.02822 0.99845 1.22622 0.95185 0.90146 1.05069 1.21862 0.98434 0.98025 0.90170 1.19681 0.86378 0.87342 0.83733 1.90504 1.43287 1.27364 1.84789 1.41861 1.45475 1.27462 1.05272 1.19699 1.27537 1.10919 0.84622 0.87869 1.25265 0.97330 0.96329 0.99052 1.69610 1.39220 1.21445 1.24093 0.85853 0.78780 0.79609 0.80035 1.20396 1.20960 1.19405 1.46466 1.66945 1.16222 1.08948 1.16630 0.77420 0.86162 0.81365 1.90899 1.49368 1.13742 1.85309 1.21125 1.15398 0.85363 0.97853 1.22573 0.98398 0.99082 0.86754 1.70426 1.19447 0.99517 1.32325 1.20281 1.00696 0.89285 0.79431 1.84813 1.34915 1.23437 1.80986 1.45885 1.48780 1.11490 1.08396 1.22386 1.04632 0.93462 0.88497 0.89356 0.92800 0.92963 0.90443 0.94686 0.91646 0.88449 0.96646 0.89399 0.93398 0.77535 0.91883 0.76966 0.79064 0.73579 0.89089 0.87675 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.30 37.16 0.35 -1.47 16 2 C 0.14 1.58 2.47 -67.93 -0.17 1.41 16 3 H 0.09 1.23 5.92 -51.93 -0.31 0.93 16 4 C 0.05 0.52 4.54 -3.83 -0.02 0.51 16 5 N -0.51 -7.72 3.90 -244.38 -0.95 -8.68 16 6 C 0.02 0.27 8.80 60.07 0.53 0.80 16 7 C 0.05 0.76 5.45 -4.98 -0.03 0.74 16 8 C 0.44 9.99 7.42 -10.99 -0.08 9.90 16 9 O -0.58 -14.90 13.96 5.54 0.08 -14.83 16 10 N -0.56 -13.79 5.29 -10.96 -0.06 -13.85 16 11 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 12 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 13 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 14 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 15 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 N -0.73 -6.63 5.05 -55.21 -0.28 -6.91 16 20 C 0.60 6.70 7.68 -12.98 -0.10 6.60 16 21 O -0.52 -7.58 16.61 5.16 0.09 -7.50 16 22 C -0.08 -0.81 6.92 -81.98 -0.57 -1.38 16 23 C 0.09 0.88 11.65 -17.50 -0.20 0.68 16 24 N -0.49 -5.22 11.22 -14.62 -0.16 -5.39 16 25 C 0.40 3.37 9.00 -89.59 -0.81 2.57 16 26 O -0.44 -2.48 13.42 -17.31 -0.23 -2.71 16 27 N -0.45 -3.25 3.20 -122.12 -0.39 -3.64 16 28 C 0.05 0.17 9.69 59.85 0.58 0.75 16 29 H 0.09 1.23 7.70 -51.93 -0.40 0.83 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.73 7.99 -51.93 -0.42 0.31 16 33 H 0.04 0.36 8.12 -51.93 -0.42 -0.07 16 34 H 0.06 0.94 6.60 -51.93 -0.34 0.60 16 35 H 0.10 1.86 5.78 -51.93 -0.30 1.56 16 36 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 37 H 0.09 1.27 7.97 -51.93 -0.41 0.86 16 38 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.39 2.44 4.37 -40.82 -0.18 2.26 16 42 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.41 0.15 9.06 45.56 0.41 0.56 16 44 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.10 0.18 8.00 -51.93 -0.42 -0.23 16 46 H 0.09 0.27 6.03 -51.93 -0.31 -0.04 16 LS Contribution 384.28 15.07 5.79 5.79 Total: -1.00 -35.59 384.28 -6.64 -42.24 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.46 Total: 9.77 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: -0.76 Total: 13.32 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.12 Total: -61.77 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.59 -6.64 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483372961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.878 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds