Wall clock time and date at job start Tue Mar 31 2020 23:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47629 * 2 1 4 4 C 1.52998 * 109.47154 * 120.00234 * 2 1 3 5 5 N 1.46896 * 109.47502 * 296.74710 * 4 2 1 6 6 C 1.46901 * 111.00067 * 297.01881 * 5 4 2 7 7 C 1.46898 * 111.00442 * 173.06147 * 5 4 2 8 8 C 1.50699 * 109.47486 * 190.00251 * 7 5 4 9 9 O 1.21297 * 119.99673 * 359.97438 * 8 7 5 10 10 N 1.34768 * 120.00044 * 180.02562 * 8 7 5 11 11 C 1.37101 * 119.99823 * 179.97438 * 10 8 7 12 12 H 1.07993 * 120.00053 * 359.97438 * 11 10 8 13 13 C 1.38954 * 120.00234 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99649 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00307 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47461 * 89.99831 * 15 13 11 17 17 H 1.48495 * 109.47054 * 209.99886 * 15 13 11 18 18 H 1.48501 * 109.46990 * 329.99595 * 15 13 11 19 19 N 1.46501 * 109.47029 * 240.00177 * 2 1 3 20 20 C 1.34778 * 119.99800 * 81.01361 * 19 2 1 21 21 O 1.21734 * 120.00139 * 5.08199 * 20 19 2 22 22 C 1.46381 * 120.00067 * 185.08403 * 20 19 2 23 23 C 1.36715 * 126.82578 * 173.91238 * 22 20 19 24 24 N 1.33230 * 107.96147 * 179.87071 * 23 22 20 25 25 C 1.31534 * 109.76026 * 0.39741 * 24 23 22 26 26 O 1.35204 * 125.49404 * 179.77002 * 25 24 23 27 27 N 1.34948 * 109.01414 * 359.75203 * 25 24 23 28 28 C 1.46501 * 126.54184 * 179.97438 * 27 25 24 29 29 H 1.08995 * 109.47078 * 299.99801 * 1 2 3 30 30 H 1.09001 * 109.47064 * 59.99331 * 1 2 3 31 31 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47227 * 56.75002 * 4 2 1 33 33 H 1.09003 * 109.47468 * 176.74384 * 4 2 1 34 34 H 1.09000 * 109.47072 * 65.51888 * 6 5 4 35 35 H 1.08992 * 109.47310 * 185.52412 * 6 5 4 36 36 H 1.08999 * 109.46910 * 305.52431 * 6 5 4 37 37 H 1.09001 * 109.47117 * 310.00308 * 7 5 4 38 38 H 1.09000 * 109.47112 * 69.99635 * 7 5 4 39 39 H 0.97000 * 120.00647 * 359.97438 * 10 8 7 40 40 H 0.96999 * 120.00279 * 180.02562 * 14 13 11 41 41 H 0.96992 * 120.00171 * 261.00975 * 19 2 1 42 42 H 1.08002 * 126.01911 * 359.97438 * 23 22 20 43 43 H 0.96706 * 114.00300 * 269.98146 * 26 25 24 44 44 H 1.08997 * 109.46869 * 262.94269 * 28 27 25 45 45 H 1.09002 * 109.47313 * 22.94094 * 28 27 25 46 46 H 1.09000 * 109.47180 * 142.94006 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6156 0.0150 2.4474 6 6 2.2082 1.3588 2.4770 7 6 1.9444 -0.7324 3.6686 8 6 1.2838 -0.0752 4.8530 9 8 0.6060 0.9183 4.6953 10 7 1.4468 -0.5909 6.0874 11 6 0.8462 0.0073 7.1649 12 1 0.2428 0.8919 7.0246 13 6 1.0138 -0.5246 8.4377 14 7 1.7476 -1.6013 8.6084 15 14 0.1949 0.2900 9.9057 16 1 -1.1542 -0.2965 10.1085 17 1 1.0198 0.0658 11.1200 18 1 0.0683 1.7483 9.6557 19 7 2.0183 -0.6906 -1.1962 20 6 2.0710 -0.0401 -2.3755 21 8 1.8013 1.1457 -2.4291 22 6 2.4525 -0.7597 -3.5918 23 6 2.4400 -0.2734 -4.8695 24 7 2.8603 -1.2422 -5.6819 25 6 3.1308 -2.3229 -4.9825 26 8 3.5757 -3.4948 -5.4891 27 7 2.8931 -2.0732 -3.6778 28 6 3.0665 -3.0098 -2.5647 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6298 -1.7308 1.2788 33 1 3.1284 -0.7721 1.2205 34 1 1.8150 1.9476 1.6482 35 1 1.9578 1.8456 3.4194 36 1 3.2914 1.2803 2.3851 37 1 1.5856 -1.7574 3.5749 38 1 3.0249 -0.7373 3.8117 39 1 1.9890 -1.3852 6.2136 40 1 1.8644 -1.9729 9.4967 41 1 2.3037 -1.6158 -1.1395 42 1 2.1436 0.7214 -5.1676 43 1 2.8710 -4.1094 -5.7361 44 1 2.1077 -3.4683 -2.3230 45 1 3.7783 -3.7847 -2.8494 46 1 3.4427 -2.4733 -1.6937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483372961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:31 Heat of formation + Delta-G solvation = -53.261730 kcal Electronic energy + Delta-G solvation = -29113.949288 eV Core-core repulsion = 24847.022652 eV Total energy + Delta-G solvation = -4266.926636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.39078 -40.87703 -40.26557 -38.52358 -38.22837 -36.41372 -35.80748 -35.10916 -33.25142 -32.16212 -30.21465 -29.33144 -28.27219 -28.09617 -26.69069 -25.17270 -23.63046 -22.71894 -21.74389 -21.36344 -20.93324 -19.83510 -19.61993 -18.69882 -17.81282 -17.61514 -17.56708 -16.70704 -16.57070 -16.52639 -16.09647 -16.03192 -15.66862 -15.59964 -15.24000 -15.02220 -14.99866 -14.68419 -14.41191 -13.87266 -13.75601 -13.58519 -13.44334 -13.37485 -13.17925 -13.02806 -12.85662 -12.66590 -12.50967 -12.43019 -12.39121 -12.12048 -11.78483 -11.54953 -11.43322 -11.13747 -10.91565 -10.36944 -10.23790 -9.96618 -9.60712 -9.21460 -8.44606 -5.92242 0.03515 1.14596 1.38785 1.42815 1.50587 1.54723 1.84390 2.09850 2.16509 2.30884 2.76321 2.87776 3.22931 3.39354 3.45779 3.66666 3.68485 3.98680 4.04514 4.21939 4.26152 4.28777 4.34725 4.38990 4.50667 4.54989 4.55644 4.61976 4.72223 4.76291 4.77166 4.84002 4.99962 5.19862 5.27300 5.32584 5.42837 5.43794 5.52125 5.86828 6.05808 6.16396 6.29006 6.57164 6.64102 6.67744 6.99923 7.16537 7.60786 8.17175 8.72677 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001833 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.506125 B =15274.431259 C =15950.055735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.149 3.851 3 H 0.072 0.928 4 C 0.053 3.947 5 N -0.528 5.528 6 C 0.025 3.975 7 C 0.060 3.940 8 C 0.441 3.559 9 O -0.614 6.614 10 N -0.575 5.575 11 C -0.329 4.329 12 H 0.077 0.923 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.989 3.011 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.275 1.275 19 N -0.712 5.712 20 C 0.601 3.399 21 O -0.560 6.560 22 C -0.094 4.094 23 C 0.074 3.926 24 N -0.524 5.524 25 C 0.412 3.588 26 O -0.440 6.440 27 N -0.440 5.440 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.033 0.967 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.396 0.604 40 H 0.277 0.723 41 H 0.409 0.591 42 H 0.193 0.807 43 H 0.430 0.570 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -10.716 -23.784 26.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.090 0.910 4 C -0.075 4.075 5 N -0.252 5.252 6 C -0.123 4.123 7 C -0.071 4.071 8 C 0.228 3.772 9 O -0.500 6.500 10 N -0.213 5.213 11 C -0.459 4.459 12 H 0.095 0.905 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.814 3.186 16 H -0.197 1.197 17 H -0.197 1.197 18 H -0.200 1.200 19 N -0.369 5.369 20 C 0.388 3.612 21 O -0.439 6.439 22 C -0.209 4.209 23 C -0.080 4.080 24 N -0.253 5.253 25 C 0.111 3.889 26 O -0.245 6.245 27 N -0.136 5.136 28 C -0.100 4.100 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.136 0.864 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.251 0.749 42 H 0.210 0.790 43 H 0.293 0.707 44 H 0.132 0.868 45 H 0.143 0.857 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.591 -9.258 -24.386 26.486 hybrid contribution 0.357 -0.655 1.755 1.907 sum 4.948 -9.913 -22.631 25.198 Atomic orbital electron populations 1.21957 0.94394 1.02604 1.01510 1.20817 0.94925 0.96821 0.83021 0.90998 1.22360 0.98997 0.98386 0.87753 1.61382 1.60225 1.02829 1.00804 1.22441 0.96266 0.90652 1.02965 1.21736 0.98968 0.98539 0.87887 1.20826 0.85150 0.86516 0.84689 1.90489 1.44809 1.29133 1.85587 1.41922 1.45983 1.27835 1.05572 1.19620 1.28807 1.11108 0.86358 0.90457 1.25976 0.97622 0.96780 1.00909 1.69662 1.39586 1.21970 1.24912 0.84974 0.78189 0.78280 0.77191 1.19735 1.19667 1.19970 1.46227 1.66136 1.16813 1.07678 1.16775 0.76708 0.85679 0.82049 1.90880 1.51374 1.15665 1.85950 1.20812 1.16639 0.86579 0.96879 1.22713 0.98607 0.99406 0.87286 1.70380 1.20984 1.00484 1.33458 1.20321 0.99169 0.89592 0.79780 1.84783 1.36149 1.22791 1.80771 1.45974 1.47616 1.10916 1.09046 1.22779 1.06647 0.93208 0.87348 0.91751 0.93913 0.91238 0.87667 0.92648 0.91196 0.92513 0.94903 0.86397 0.91189 0.76973 0.91403 0.74928 0.79032 0.70745 0.86770 0.85677 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.30 71.98 0.67 -2.67 16 2 C 0.15 3.05 2.47 44.99 0.11 3.16 16 3 H 0.07 1.85 5.92 -2.39 -0.01 1.83 16 4 C 0.05 0.98 4.54 86.30 0.39 1.38 16 5 N -0.53 -15.03 3.90 -927.07 -3.62 -18.65 16 6 C 0.02 0.76 8.80 127.69 1.12 1.89 16 7 C 0.06 1.83 5.45 85.56 0.47 2.29 16 8 C 0.44 19.88 7.42 87.66 0.65 20.53 16 9 O -0.61 -32.73 13.96 -3.08 -0.04 -32.77 16 10 N -0.58 -28.34 5.29 -306.99 -1.62 -29.96 16 11 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 14 N -0.92 -48.48 13.05 21.67 0.28 -48.20 16 15 Si 0.99 42.41 29.55 68.60 2.03 44.43 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 19 N -0.71 -11.28 5.05 -446.78 -2.26 -13.53 16 20 C 0.60 12.93 7.68 86.36 0.66 13.59 16 21 O -0.56 -16.69 16.61 -4.46 -0.07 -16.76 16 22 C -0.09 -1.74 6.92 39.80 0.28 -1.46 16 23 C 0.07 1.52 11.65 84.12 0.98 2.50 16 24 N -0.52 -10.85 11.22 -313.65 -3.52 -14.37 16 25 C 0.41 6.08 9.00 179.99 1.62 7.70 16 26 O -0.44 -3.72 13.42 -84.85 -1.14 -4.86 16 27 N -0.44 -5.30 3.20 -652.00 -2.09 -7.39 16 28 C 0.04 0.10 9.69 127.77 1.24 1.34 16 29 H 0.06 1.79 7.70 -2.39 -0.02 1.78 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.43 7.99 -2.39 -0.02 1.41 16 33 H 0.06 0.86 8.12 -2.39 -0.02 0.85 16 34 H 0.07 2.05 6.60 -2.39 -0.02 2.03 16 35 H 0.06 2.23 5.78 -2.39 -0.01 2.21 16 36 H 0.03 0.87 8.11 -2.39 -0.02 0.85 16 37 H 0.12 2.95 7.97 -2.39 -0.02 2.93 16 38 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 39 H 0.40 18.37 7.90 -92.71 -0.73 17.63 16 40 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 41 H 0.41 3.59 4.37 -92.71 -0.41 3.18 16 42 H 0.19 3.59 8.06 -2.91 -0.02 3.57 16 43 H 0.43 -1.04 9.06 -74.05 -0.67 -1.71 16 44 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.12 -0.12 8.00 -2.39 -0.02 -0.14 16 46 H 0.10 0.17 6.03 -2.39 -0.01 0.15 16 Total: -1.00 -80.26 384.28 -3.33 -83.59 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.75 Total: 25.91 kcal Atomic # 6 Polarization: 23.08 SS G_CDS: 9.47 Total: 32.55 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -12.82 Total: -132.10 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -1.26 Total: -54.40 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -80.26 -3.33 -83.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483372961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.333 kcal (2) G-P(sol) polarization free energy of solvation -80.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds